Generation of folk song melodies using Bayes transforms

The paper introduces the `Bayes transform', a mathematical procedure for putting data into a hierarchical representation. Applicable to any type of data, the procedure yields interesting results when applied to sequences. In this case, the representation obtained implicitly models the repetition hierarchy of the source. There are then natural applications to music. Derivation of Bayes transforms can be the means of determining the repetition hierarchy of note sequences (melodies) in an empirical and domain-general way. The paper investigates application of this approach to Folk Song, examining the results that can be obtained by treating such transforms as generative models

A mutated dph3 gene causes sensitivity of Schizosaccharomyces pombe cells to cytotoxic agents

Dph3 is involved in diphthamide modification of the eukaryotic translation elongation factor eEF2 and in Elongator-mediated modifications of tRNAs, where a 5-methoxycarbonyl-methyl moiety is added to wobble uridines. Lack of such modifications affects protein synthesis due to inaccurate translation of mRNAs at ribosomes. We have discovered that integration of markers at the msh3 locus of Schizosaccharomyces pombe impaired the function of the nearby located dph3 gene. Such integrations rendered cells sensitive to the cytotoxic drugs hydroxyurea and methyl methanesulfonate. We constructed dph3 and msh3 strains with mutated ATG start codons (ATGmut), which allowed investigating drug sensitivity without potential interference by marker insertions. The dph3- ATGmut and a dph3::loxP-ura4-loxM gene disruption strain, but not msh3-ATGmut, turned out to be sensitive to hydroxyurea and methyl methanesulfonate, likewise the strains with cassettes integrated at the msh3 locus. The fungicide sordarin, which inhibits diphthamide modified eEF2 of Saccharomyces cerevisiae, barely affected survival of wild type and msh3Δ S. pombe cells, while the dph3Δ mutant was sensitive. The msh3-ATG mutation, but not dph3Δ or the dph3-ATG mutation caused a defect in mating-type switching, indicating that the ura4 marker at the dph3 locus did not interfere with Msh3 function. We conclude that Dph3 is required for cellular resistance to the fungicide sordarin and to the cytotoxic drugs hydroxyurea and methyl methanesulfonate. This is likely mediated by efficient translation of proteins in response to DNA damage and replication stress

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Aspectos a observar na seleção de sistemas agroflorestais sucessionais para análise financeira.

Na construção de uma pesquisa em análise financeira de SAFs sucessionais é importante a atenção para determinados aspectos a serem observados para a seleção de SAFs sucessionais. Tal observação otimizará os esforços de pesquisa e gerará resultados mais consistentes. Buscaram-se áreas adequadas para a realização de análise financeira dos SAFs sucessionais e em cada SAF sucessional visitado foram averiguados quanto a adequação ou não para a realização da análise financeira, sendo os motivos das adequações e inadequações anotados a posteriormente analisados, agrupados e transformados em um roteiro de observações. Entre os aspectos, destacam-se verificar se o tamanho da área, a disposição do agricultor em colaborar, o acesso a informações básicas, a viabilidade logística para trabalhos de campo, a condução padronizada ao longo do tempo e a produção como objetivo principal do SAF sucessional

Seleção de sistemas agroflorestais multiestrata para análise financeira.

Este trabalho é focado nas características necessárias de um sistema agroflorestal (SAF) multiestrata para a realização de uma análise financeira, definidos a partir de um conjunto de planilhas eletrônicas usadas para SAFs. As características definidos foram:1 - Recomendações participativas, 2 - Área mínima, 3 - Disposição colaborativa, 4 - Acessibilidade a informações, 5 - Logística para análise, 6 - Fieza do agricultor no sistema, 7 - Objetivo produtivo, 8 - Planejamento prévio do SAF, 9 - Padrão temporal, 10 - Replicabilidade do sistema e 11 - Disponibilidade de parâmetros. Conclui-se que a presença destas características nas áreas selecionadas irá otimizar os esforços de pesquisa e gerar resultados mais consistentesEdição dos Resumos do 9º Congresso Brasileiro de Agroecologia, 2015, Belém

A human keratin 10 knockout causes recessive epidermolytic hyperkeratosis

Epidermolytic hyperkeratosis (EHK) is a blistering skin disease inherited as an autosomal-dominant trait. The disease is caused by genetic defects of the epidermal keratin K1 or K10, leading to an impaired tonofilament network of differentiating epidermal cells. Here, we describe for the first time a kindred with recessive inheritance of EHK. Sequence analysis revealed a homozygous nonsense mutation of the KRT10 gene in the affected family members, leading to a premature termination codon (p.Q434X), whereas the clinically unaffected consanguineous parents were both heterozygous carriers of the mutation. Semi-quantitative RT-PCR and western blot analysis demonstrated degradation of the KRT10 transcript, resulting in complete absence of keratin K10 protein in the epidermis and cultured keratinocytes of homozygous patients. This K10 null mutation leads to a severe phenotype, clinically resembling autosomal-dominant EHK, but differing in form and distribution of keratin aggregates on ultrastructural analysis. Strong induction of the wound-healing keratins K6, K16 and K17 was found in the suprabasal epidermis, which are not able to compensate for the lack of keratin 10. We demonstrate that a recessive mutation in KRT10 leading to a complete human K10 knockout can cause EHK. Identification of the heterogeneity of this disorder has a major impact for the accurate genetic counseling of patients and their families and also has implications for gene-therapy approaches

Expectation in Melody: The Influence of Context and Learning

The Implication-Realization (IR) theory (Narmour, 1990) posits two cognitive systems involved in the generation of melodic expectations: The first consists of a limited number of symbolic rules that are held to be innate and universal; the second reflects the top-down influences of acquired stylistic knowledge. Aspects of both systems have been implemented as quantitative models in research which has yielded empirical support for both components of the theory (Cuddy & Lunny, 1995; Krumhansl, 1995a, 1995b; Schellenberg, 1996, 1997). However, there is also evidence that the implemented bottom-up rules constitute too inflexible a model to account for the influence of the musical experience of the listener and the melodic context in which expectations are elicited. A theory is presented, according to which both bottom-up and top-down descriptions of observed patterns of melodic expectation may be accounted for in terms of the induction of statistical regularities in existing musical repertoires. A computational model that embodies this theory is developed and used to reanalyze existing experimental data on melodic expectancy. The results of three experiments with increasingly complex melodic stimuli demonstrate that this model is capable of accounting for listeners’ expectations as well as or better than the two-factor model of Schellenberg (1997)

Potential determinants of obesity among children and adolescents in Germany: results from the cross-sectional KiGGS study

<p>Abstract</p> <p>Background</p> <p>Obesity among children and adolescents is a growing public health problem. The aim of the present paper is to identify potential determinants of obesity and risk groups among 3- to 17-year old children and adolescents to provide a basis for effective prevention strategies.</p> <p>Methods</p> <p>Data were collected in the German Health Interview and Examination Survey for Children and Adolescents (KiGGS), a nationally representative and comprehensive data set on health behaviour and health status of German children and adolescents. Body height and weight were measured and body mass index (BMI) was classified according to IOTF cut-off points. Statistical analyses were conducted on 13,450 non-underweight children and adolescents aged 3 to 17 years. The association between overweight, obesity and several potential determinants was analysed for this group as well as for three socio-economic status (SES) groups. A multiple logistic regression model with obesity as the dependent variable was also calculated.</p> <p>Results</p> <p>The strongest association with obesity was observed for parental overweight and for low SES. Furthermore, a positive association with both overweight (including obesity) and obesity was seen for maternal smoking during pregnancy, high weight gain during pregnancy (only for mothers of normal weight), high birth weight, and high media consumption. In addition, high intakes of meat and sausages, total beverages, water and tea, total food and beverages, as well as energy-providing food and beverages were significantly associated with overweight as well as with obesity. Long sleep time was negatively associated with obesity among 3- to 10-year olds. Determinants of obesity occurred more often among children and adolescents with low SES.</p> <p>Conclusion</p> <p>Parental overweight and a low SES are major potential determinants of obesity. Families with these characteristics should be focused on in obesity prevention.</p

Purification and Characterization of a Novel Hypersensitive Response-Inducing Elicitor from Magnaporthe oryzae that Triggers Defense Response in Rice

<div><h3>Background</h3><p><em>Magnaporthe oryzae</em>, the rice blast fungus, might secrete certain proteins related to plant-fungal pathogen interactions.</p> <h3>Methodology/Principal Findings</h3><p>In this study, we report the purification, characterization, and gene cloning of a novel hypersensitive response-inducing protein elicitor (MoHrip1) secreted by <em>M. oryzae</em>. The protein fraction was purified and identified by de novo sequencing, and the sequence matched the genomic sequence of a putative protein from <em>M. oryzae</em> strain 70-15 (GenBank accession No. XP_366602.1). The elicitor-encoding gene <em>mohrip1</em> was isolated; it consisted of a 429 bp cDNA, which encodes a polypeptide of 142 amino acids with a molecular weight of 14.322 kDa and a pI of 4.53. The deduced protein, MoHrip1, was expressed in <em>E. coli</em>. And the expression protein collected from bacterium also forms necrotic lesions in tobacco. MoHrip1 could induce the early events of the defense response, including hydrogen peroxide production, callose deposition, and alkalization of the extracellular medium, in tobacco. Moreover, MoHrip1-treated rice seedlings possessed significantly enhanced systemic resistance to <em>M. oryzae</em> compared to the control seedlings. The real-time PCR results indicated that the expression of some pathogenesis-related genes and genes involved in signal transduction could also be induced by MoHrip1.</p> <h3>Conclusion/Significance</h3><p>The results demonstrate that MoHrip1 triggers defense responses in rice and could be used for controlling rice blast disease.</p> </div