2,741 research outputs found
Shocks in the asymmetric exclusion process with internal degree of freedom
We determine all families of Markovian three-states lattice gases with pair
interaction and a single local conservation law. One such family of models is
an asymmetric exclusion process where particles exist in two different
nonconserved states. We derive conditions on the transition rates between the
two states such that the shock has a particularly simple structure with minimal
intrinsic shock width and random walk dynamics. We calculate the drift velocity
and diffusion coefficient of the shock.Comment: 26 pages, 1 figur
Hydrodynamics of the zero-range process in the condensation regime
We argue that the coarse-grained dynamics of the zero-range process in the
condensation regime can be described by an extension of the standard
hydrodynamic equation obtained from Eulerian scaling even though the system is
not locally stationary. Our result is supported by Monte Carlo simulations.Comment: 14 pages, 3 figures. v2: Minor alteration
Why spontaneous symmetry breaking disappears in a bridge system with PDE-friendly boundaries
We consider a driven diffusive system with two types of particles, A and B,
coupled at the ends to reservoirs with fixed particle densities. To define
stochastic dynamics that correspond to boundary reservoirs we introduce
projection measures. The stationary state is shown to be approached dynamically
through an infinite reflection of shocks from the boundaries. We argue that
spontaneous symmetry breaking observed in similar systems is due to placing
effective impurities at the boundaries and therefore does not occur in our
system. Monte-Carlo simulations confirm our results.Comment: 24 pages, 7 figure
Increased diversity of egg-associated bacteria on brown trout (Salmo trutta) at elevated temperatures.
The taxonomic composition of egg-associated microbial communities can play a crucial role in the development of fish embryos. In response, hosts increasingly influence the composition of their associated microbial communities during embryogenesis, as concluded from recent field studies and laboratory experiments. However, little is known about the taxonomic composition and the diversity of egg-associated microbial communities within ecosystems; e.g., river networks. We sampled late embryonic stages of naturally spawned brown trout at nine locations within two different river networks and applied 16S rRNA pyrosequencing to describe their bacterial communities. We found no evidence for a significant isolation-by-distance effect on the composition of bacterial communities, and no association between neutral genetic divergence of fish host (based on 11 microsatellites) and phylogenetic distances of the composition of their associated bacterial communities. We characterized core bacterial communities on brown trout eggs and compared them to corresponding water samples with regard to bacterial composition and its presumptive function. Bacterial diversity was positively correlated with water temperature at the spawning locations. We discuss this finding in the context of the increased water temperatures that have been recorded during the last 25 years in the study area
On the solvable multi-species reaction-diffusion processes
A family of one-dimensional multi-species reaction-diffusion processes on a
lattice is introduced. It is shown that these processes are exactly solvable,
provided a nonspectral matrix equation is satisfied. Some general remarks on
the solutions to this equation, and some special solutions are given. The
large-time behavior of the conditional probabilities of such systems are also
investigated.Comment: 13 pages, LaTeX2
Exact time-dependent correlation functions for the symmetric exclusion process with open boundary
As a simple model for single-file diffusion of hard core particles we
investigate the one-dimensional symmetric exclusion process. We consider an
open semi-infinite system where one end is coupled to an external reservoir of
constant density and which initially is in an non-equilibrium state
with bulk density . We calculate the exact time-dependent two-point
density correlation function and the mean and variance of the integrated average net flux
of particles that have entered (or left) the system up to time .
We find that the boundary region of the semi-infinite relaxing system is in a
state similar to the bulk state of a finite stationary system driven by a
boundary gradient. The symmetric exclusion model provides a rare example where
such behavior can be proved rigorously on the level of equal-time two-point
correlation functions. Some implications for the relaxational dynamics of
entangled polymers and for single-file diffusion in colloidal systems are
discussed.Comment: 11 pages, uses REVTEX, 2 figures. Minor typos corrected and reference
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Bethe Ansatz Solution of the Asymmetric Exclusion Process with Open Boundaries
We derive the Bethe ansatz equations describing the complete spectrum of the
transition matrix of the partially asymmetric exclusion process with the most
general open boundary conditions. For totally asymmetric diffusion we calculate
the spectral gap, which characterizes the approach to stationarity at large
times. We observe boundary induced crossovers in and between massive, diffusive
and KPZ scaling regimes.Comment: 4 pages, 2 figures, published versio
Exact solution of a one-parameter family of asymmetric exclusion processes
We define a family of asymmetric processes for particles on a one-dimensional
lattice, depending on a continuous parameter ,
interpolating between the completely asymmetric processes [1] (for ) and the n=1 drop-push models [2] (for ). For arbitrary \la,
the model describes an exclusion process, in which a particle pushes its right
neighbouring particles to the right, with rates depending on the number of
these particles. Using the Bethe ansatz, we obtain the exact solution of the
master equation .Comment: 14 pages, LaTe
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Vimentin intermediate filament rings deform the nucleus during the first steps of adhesion
During cell spreading, cells undergo many changes to their architecture and their mechanical properties. Vimentin, as an integral part of the cell architecture, and its mechanical stability must adapt to the new state of the cell. This study focuses on the structures formed by vimentin during the first steps of cell adhesion. Very early, ball-like structures, or “knots,” are seen and often vimentin filaments emerge in the shape of rings around the nucleus. Although intermediate filaments are not known to be associated to motor proteins to form contractile systems, these rings can nonetheless strongly deform the cell nucleus. In the first 6 to 12 h of adhesion, these vimentin knots and rings disappear, and the intermediate filament network returns to the state seen before detachment of the cells. As these vimentin structures are very transient in the early steps of cell spreading, they have rarely been described in the literature. However, they can also be seen during mitosis, which is an event that involves partial detachment and re-spreading of the cells. Interestingly, the turnover dynamics of vimentin are reduced in both the knots and rings, compared to vimentin in the lamellipodia. It remains to define how the force is transmitted from the ball-like structures to the rings, and to measure the impact of such strong nuclear deformation on gene expression during cell re-spreading and the rearrangement of the vimentin network. Copyright © 2019 Terriac, Schütz and Lautenschläger. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms
Equivalence of a one-dimensional driven-diffusive system and an equilibrium two-dimensional walk model
It is known that a single product shock measure in some of one-dimensional
driven-diffusive systems with nearest-neighbor interactions might evolve in
time quite similar to a random walker moving on a one-dimensional lattice with
reflecting boundaries. The non-equilibrium steady-state of the system in this
case can be written in terms of a linear superposition of such uncorrelated
shocks. Equivalently, one can write the steady-state of this system using a
matrix-product approach with two-dimensional matrices. In this paper we
introduce an equilibrium two-dimensional one-transit walk model and find its
partition function using a transfer matrix method. We will show that there is a
direct connection between the partition functions of these two systems. We will
explicitly show that in the steady-state the transfer matrix of the one-transit
walk model is related to the matrix representation of the algebra of the
driven-diffusive model through a similarity transformation. The physical
quantities are also related through the same transformation.Comment: 5 pages, 2 figures, Revte
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