Linearized gravity as a gauge theory

We discuss linearized gravity from the point of view of a gauge theory. In (3+1)-dimensions our analysis allows to consider linearized gravity in the context of the MacDowell-Mansouri formalism. Our observations may be of particular interest in the strong-weak coupling duality for linearized gravity, in Randall-Sundrum brane world scenario and in Ashtekar formalism.Comment: Latex, 13 page

Translational groups as generators of gauge transformations

We examine the gauge generating nature of the translational subgroup of Wigner's little group for the case of massless tensor gauge theories and show that the gauge transformations generated by the translational group is only a subset of the complete set of gauge transformations. We also show that, just like the case of topologically massive gauge theories, translational groups act as generators of gauge transformations in gauge theories obtained by extending massive gauge noninvariant theories by a Stuckelberg mechanism. The representations of the translational groups that generate gauge transformations in such Stuckelberg extended theories can be obtained by the method of dimensional descent. We illustrate these with the examples of Stuckelberg extended first class versions of Proca, Einstein-Pauli-Fierz and massive Kalb-Ramond theories in 3+1 dimensions. A detailed analysis of the partial gauge generation in massive and massless 2nd rank symmetric gauge theories is provided. The gauge transformations generated by translational group in 2-form gauge theories are shown to explicitly manifest the reducibility of gauge transformations in these theories.Comment: Latex, 20 pages, no figures, Version to appear in Physical Review

Rotations associated with Lorentz boosts

It is possible to associate two angles with two successive non-collinear Lorentz boosts. If one boost is applied after the initial boost, the result is the final boost preceded by a rotation called the Wigner rotation. The other rotation is associated with Wigner's O(3)-like little group. These two angles are shown to be different. However, it is shown that the sum of these two rotation angles is equal to the angle between the initial and final boosts. This relation is studied for both low-speed and high-speed limits. Furthermore, it is noted that the two-by-two matrices which are under the responsibility of other branches of physics can be interpreted in terms of the transformations of the Lorentz group, or vice versa. Classical ray optics is mentioned as a case in point.Comment: LaTeX, 16 Pages, 4 epsfigure

Sestrin2 is a leucine sensor for the mTORC1 pathway

Leucine is a proteogenic amino acid that also regulates many aspects of mammalian physiology, in large part by activating the mTOR complex 1 (mTORC1) protein kinase, a master growth controller. Amino acids signal to mTORC1 through the Rag guanosine triphosphatases (GTPases). Several factors regulate the Rags, including GATOR1, aGTPase-activating protein; GATOR2, a positive regulator of unknown function; and Sestrin2, a GATOR2-interacting protein that inhibits mTORC1 signaling. We find that leucine, but not arginine, disrupts the Sestrin2-GATOR2 interaction by binding to Sestrin2 with a dissociation constant of 20 micromolar, which is the leucine concentration that half-maximally activates mTORC1. The leucine-binding capacity of Sestrin2 is required for leucine to activate mTORC1 in cells. These results indicate that Sestrin2 is a leucine sensor for the mTORC1 pathway.United States. National Institutes of Health (R01CA103866)United States. National Institutes of Health (AI47389)United States. Department of Defense (W81XWH-07-0448)United States. National Institutes of Health (T32 GM007753)United States. National Institutes of Health (F30 CA189333)United States. National Institutes of Health (F31 CA180271

The CASTOR Proteins Are Arginine Sensors for the mTORC1 Pathway

Amino acids signal to the mTOR complex I (mTORC1) growth pathway through the Rag GTPases. Multiple distinct complexes regulate the Rags, including GATOR1, a GTPase activating protein (GAP), and GATOR2, a positive regulator of unknown molecular function. Arginine stimulation of cells activates mTORC1, but how it is sensed is not well understood. Recently, SLC38A9 was identified as a putative lysosomal arginine sensor required for arginine to activate mTORC1 but how arginine deprivation represses mTORC1 is unknown. Here, we show that CASTOR1, a previously uncharacterized protein, interacts with GATOR2 and is required for arginine deprivation to inhibit mTORC1. CASTOR1 homodimerizes and can also heterodimerize with the related protein, CASTOR2. Arginine disrupts the CASTOR1-GATOR2 complex by binding to CASTOR1 with a dissociation constant of ∼30 μM, and its arginine-binding capacity is required for arginine to activate mTORC1 in cells. Collectively, these results establish CASTOR1 as an arginine sensor for the mTORC1 pathway.United States. National Institutes of Health (R01CA103866)United States. National Institutes of Health (AI47389)United States. Department of Energy (W81XWH-07-0448)United States. National Institutes of Health (F31 CA180271)United States. National Institutes of Health (F31 CA189437

Immunogenicity and protective efficacy of the Mycobacterium avium subsp. paratuberculosis attenuated mutants against challenge in a mouse model

Johne’s disease (JD), caused by Mycobacterium avium subsp. paratuberculosis (MAP), results in serious economic losses worldwide especially in cattle, sheep and goats. To control the impact of JD on the animal industry, an effective vaccine with minimal adverse effects is urgently required. In order to develop an effective vaccine, we used allelic exchange to construct three mutant MAP strains, leuD, mpt64 and secA2. The mutants were attenuated in a murine model and induced cytokine responses in J774A.1 cell. The leuD mutant was the most obviously attenuated of the three constructed mutant strains. Our preliminary vaccine trial in mice demonstrated different levels of protection were induced by these mutants based on the acid-fast bacilli burden in livers and spleens at 8 and 12 weeks post challenge. In addition, vaccination with leuD mutant induced a high level of IFN- production and significant protective efficacy in both the reduction of inflammation and clearance of acid-fast bacilli, as compared with the mock vaccinated group

Barcoding of Asian seabass across its geographic range provides evidence for its bifurcation into two distinct species

Asian seabass or barramundi (Lates calcarifer) is an important food fish with commercial value and a wide geographic distribution. Though some reports based on molecular and/or morphological data exist, a comprehensive effort to establish species identity across its range is lacking. In order to address this issue and especially to ascertain whether the wide-spread distribution has resulted in bifurcation of the species, we collected Asian seabass samples from various locations representing the Western and Eastern Coastline of India, Andaman and Nicobar Islands, Bangladesh and Australia. Samples from Malaysia, Indonesia, Thailand and Singapore were collected as part of a previous study. DNA sequence variations, including cytochrome c oxidase subunit 1 (COI), 16S rDNA and the highly variable D-loop (or control region), were examined to establish species delineation. Data from all the sequences analyzed concordantly point to the existence of at least two distinct species—one representing the Indian subcontinent plus Myanmar, and a second, representing Southeast Asia (Singapore, Malaysia, Thailand and Indonesia) plus Northern Australia. These data are useful for conservation ecology, aquaculture management, for establishing the extent of genetic diversity in the Asian seabass and implementing selective breeding programs for members of this species complex

Knowledge and attitudes about health research amongst a group of Pakistani medical students

Background Health research training is an important part of medical education. This study was conducted to assess the level of knowledge and attitudes regarding health research in a group of Pakistani medical students at Aga Khan University, Karachi. Methods It was a cross-sectional pilot study conducted among a group of Pakistani medical students. Through stratified random sampling, a pre-tested, structured and validated questionnaire was administered to 220 medical students. Knowledge and attitudes were recorded on a scale (graduated in percentages). Results Mean scores of students were 49.0% on knowledge scale and 53.7% on attitude scale. Both knowledge and attitudes improved significantly with increasing years of study in medical college [Regression coefficient 4.10 (p-value; 0.019) and 6.67 (p-value; \u3c 0.001) for knowledge and attitudes, respectively]. Conclusion Medical students demonstrate moderate level of knowledge and attitude towards health research. Intensive training in this regard is associated with significant improvement in knowledge and attitudes of students towards health research

The microbial nitrogen cycling, bacterial community composition, and functional potential in a natural grassland are stable from breaking dormancy to being dormant again

DATA AVAILABILITY STATEMENT : The raw data is available on NCBI’s Sequence Read Archive (SRA) database under BioProject: PRJNA803487.SUPPLEMENTARY MATERIALS : FIGURE S1: Soil textures of the sampling sites; FIGURE S2: Distribution of plant groups across the six study sites; FIGURE S3: Plant species distribution across the study sites. The legume species are represented by asterisk (*) on the legend. The abbreviations represent: BRIN, Bromus inermis; POPR, Poa pratensis; PHAR, Phalaris arundinacea; CA, Carex sp.; NA, Nassella sp.; ANGE, Andropogon gerardii; SCSC, Schizachyrium scoparium; BOCU, Bouteloua curtipendula; DIOL, Dichanthelium oligosanthes; CIFL, Cirsium flodmanii; ASSP, Asclepias speciose; SOMI, Solidago missouriensis; HEMA, Helianthus maximiliani; ANCA, Anemone canadensis; SOCA, Solidago canadensis; GLLE, Glycyrrhiza lepidota; PH, Physalis sp.; AMCA*, Amorpha canescens; DAPU*, Dalea purpurea; PE*, Pediomelum sp.; RO, Rosa sp.; FIGURE S4: Soil chemical properties across sampling sites within the sampling time points with Kruskal–Wallis test results; FIGURE S5: Alpha-diversity of the bacterial communities across 6 months. (a) Shannon diversity and (b) Pielou Evenness.; FIGURE S6: Taxa differences across at least one time point across the seasons (p < 0.01). The names of the phyla shown here are based on the taxonomic profile downloaded from the Greengenes database, however, some of the phylum names have recently been changed [38]; TABLE S1. G-Block solutions; TABLE S2. Primers used for nitrogen cycle genes. SUPPLEMENTARY DATA S3. R 2 values of the qPCR assays. SUPPLEMENTARY DATA S4. OTU table.The quantity of grass-root exudates varies by season, suggesting temporal shifts in soil microbial community composition and activity across a growing season. We hypothesized that bacterial community and nitrogen cycle-associated prokaryotic gene expressions shift across three phases of the growing season. To test this hypothesis, we quantified gene and transcript copy number of nitrogen fixation (nifH), ammonia oxidation (amoA, hao, nxrB), denitrification (narG, napA, nirK, nirS, norB, nosZ), dissimilatory nitrate reduction to ammonia (nrfA), and anaerobic ammonium oxidation (hzs, hdh) using the pre-optimized Nitrogen Cycle Evaluation (NiCE) chip. Bacterial community composition was characterized using V3-V4 of the 16S rRNA gene, and PICRUSt2 was used to draw out functional inferences. Surprisingly, the nitrogen cycle genes and transcript quantities were largely stable and unresponsive to seasonal changes. We found that genes and transcripts related to ammonia oxidation and denitrification were different for only one or two time points across the seasons (p < 0.05). However, overall, the nitrogen cycling genes did not show drastic variations. Similarly, the bacterial community also did not vary across the seasons. In contrast, the predicted functional potential was slightly low for May and remained constant for other months. Moreover, soil chemical properties showed a seasonal pattern only for nitrate and ammonium concentrations, while ammonia oxidation and denitrification transcripts were strongly correlated with each other. Hence, the results refuted our assumptions, showing stability in N cycling and bacterial community across growing seasons in a natural grassland.The South Dakota Agricultural Experiment Station.https://www.mdpi.com/journal/microorganismsam2023BiochemistryGeneticsMicrobiology and Plant Patholog

Tissue underlying the intestinal epithelium elicits proliferation of intestinal stem cells following cytotoxic damage

The goals of this study were to document the proliferative response of intestinal stem cells (ISCs) during regeneration after damage from doxorubicin (DXR) and to characterize the signals responsible for ISC activation. To this end, jejuni from DXR-treated mice were harvested for histology, assessment of ISC numbers and proliferation by flow cytometry, crypt culture, and RNA analyses. Histology showed that crypt depth and width were increased 4 days after DXR. At this time point, flow cytometry on tissue collected 1 hour after EdU administration revealed increased numbers of CD24loUEA− ISCs and increased percentage of ISCs cycling. In culture, crypts harvested from DXR-treated mice were equally proliferative as those of control mice. Addition of subepithelial intestinal tissue (SET) collected 4 days after DXR elicited increased budding (1.4 ± 0.3 vs. 5.1 ± 1.0 buds per enteroid). Microarray analysis of SET collected 4 days after DXR revealed 1,030 differentially expressed transcripts. Cross comparison of Gene Ontology terms considered relevant to ISC activation pointed to 10 candidate genes. Of these the epidermal growth factor (EGF) family member amphiregulin and the BMP antagonist chordin-like 2 were chosen for further study. In crypt culture, amphiregulin alone did not elicit significant budding, but amphiregulin in combination with BMP antagonism showed marked synergism (yielding 6.3 ± 0.5 buds per enteroid). These data suggest a critical role for underlying tissue in regulating ISC behavior after damage, and point to synergism between amphiregulin and chordin-like 2 as factors which may account for activation of ISCs in the regenerative phase