Implications of warming temperatures for population outbreaks of a nonindigenous species (Membranipora membranacea, Bryozoa) in rocky subtidal ecosystems

To quantify and explore the role of temperature on population outbreaks of a nonindigenous bryozoan (Membranipora membranacea) in kelp beds in the western North Atlantic (Nova Scotia, Canada), we constructed an individual-based model using field-derived estimates for temperature-dependent colony settlement and growth. Using temperature as the single input variable, the model successfully simulated the timing of onset of settlement, colony abundance, colony size, and coverage on kelps. We used the model to examine the relative effect on the population of varying temperature by -2°C to +2°C each day. The timing of onset of settlement varied by 18 d °C with changes in temperature from January to August. Variations in temperature had nonlinear effects on the population, with an increase in daily temperature of 1°C and 2°C causing the cover of colonies on kelps to increase by factors of 9 and 62, respectively. Changes in winter and spring temperature had the most pronounced effects on the timing and abundance of colonies, while changes in summer temperature had the most pronounced effect on colony size and coverage on kelp blades. Outbreaks of this species will increase in frequency and intensity if temperatures warm as a result of climate change, causing defoliation of kelp beds and, thus, facilitating the invasion of other nonindigenous benthic species

Legal frameworks for unique ecosystems – how can the EPBC Act offsets policy address the impact of development on seagrass?

Environmental or biodiversity offset policies allow for impacts occurring at one site to be offset through activities at another site. The federal government has recently released a policy for offsetting the impacts of activities approved under the Environment Protection and Biodiversity Conservation Act 1999 (Cth) (EPBC Act). The EPBC Act policy can be used to offset impacts on terrestrial and marine ecosystems, and one of the first applications of the policy has been to offset impacts on seagrass meadows at risk due to the Abbot Point coal terminal expansion. The significant ecological differences between terrestrial and marine ecosystems, such as seagrass meadows, require different management approaches to ensure that impacts are offset. This article analyses the EPBC Act policy to determine whether it adequately caters for offsetting impacts on marine ecosystems, with seagrass used as an example. It concludes with recommendations for policy change directed at ensuring that the unique characteristics of seagrass ecosystems are considered in offset policies

Interactions between global and local stressors of ecosystems determine management effectiveness in cumulative impact mapping

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Using threat maps for cost-effective prioritization of actions to conserve coastal habitats

Marine coastal habitats provide valuable ecosystem services, including food provision, carbon sequestration, and coastal protection, but they are highly threatened by human activities. The multitude of human stressors affecting coastal habitats renders their conservation a difficult task for environmental agencies with limited budgets. This study, using seagrass meadows - one of the world's most threatened coastal habitats - proposes a transparent framework for the conservation of coastal habitats that links information from habitat and threat maps to conservation actions, and their costs. The proposed framework and the use of a predictive model of seagrass loss allowed the selection of the most cost-effective actions to abate stoppable threats (trawling and anchoring), while avoiding areas affected by threats that are more difficult to manage, such as coastal development. The relative improvement in cost achieved by using the proposed approach was examined by comparing with other common prioritization criteria that do not consider cost, including choosing sites based on threat level or habitat cover alone. The establishment of anti-trawling reefs was found to be the most cost-effective action to achieve the European Union conservation target for the protection of seagrass Posidonia oceanica meadows. The number of anti-trawling reefs and their establishment location was sensitive to fine-scale information on the distribution of fishing activities. The proposed approach always conserved the same habitat for lower cost than prioritization schemes that focus actions in areas of highest seagrass coverage or highest threat level. The study results suggest that conservation actions should not be prioritized on the basis of habitat maps and/or threat maps alone. Impact assessment and habitat vulnerability at a local scale would greatly benefit from detailed knowledge of the spatial distribution of stressors. At the same time, methods of scaling up the quantitative impact of stressors are urgently needed to understand their relationship with seascape-wide habitat coverage and to inform conservation of coastal habitats. (C) 2015 Elsevier Ltd. All rights reserved

Spatial and temporal variability of seagrass at Lizard Island, Great Barrier Reef

Increasing threats to natural ecosystems from local and global stressors are reinforcing the need for baseline data on the distribution and abundance of organisms. We quantified spatial and/or temporal patterns of seagrass distribution, shoot density, leaf area index, biomass, productivity, and sediment carbon content in shallow water (0-5 m) at Lizard Island, Great Barrier Reef, Australia, in field surveys conducted in December 2011 and October 2012. Seagrass meadows were mapped using satellite imagery and field validation. A total of 18.3 ha of seagrass, composed primarily of Thalassia hemprichii and Halodule uninervis, was mapped in shallow water. This was 46% less than the area of seagrass in the same region reported in 1995, although variations in mapping methods may have influenced the magnitude of change detected. There was inter-annual variability in shoot density and length, with values for both higher in 2011 than in 2012. Seagrass properties and sediment carbon content were representative of shallow-water seagrass meadows on a mid-shelf Great Barrier Reef island. The data can be used to evaluate change, to parameterize models of the impact of anthropogenic or environmental variability on seagrass distribution and abundance, and to assess the success of management actions

Drivers of global mangrove loss and gain in social-ecological systems

Mangrove forests store high amounts of carbon, protect communities from storms, and support fisheries. Mangroves exist in complex social-ecological systems, hence identifying socioeconomic conditions associated with decreasing losses and increasing gains remains challenging albeit important. The impact of national governance and conservation policies on mangrove conservation at the landscape-scale has not been assessed to date, nor have the interactions with local economic pressures and biophysical drivers. Here, we assess the relationship between socioeconomic and biophysical variables and mangrove change across coastal geomorphic units worldwide from 1996 to 2016. Globally, we find that drivers of loss can also be drivers of gain, and that drivers have changed over 20 years. The association with economic growth appears to have reversed, shifting from negatively impacting mangroves in the first decade to enabling mangrove expansion in the second decade. Importantly, we find that community forestry is promoting mangrove expansion, whereas conversion to agriculture and aquaculture, often occurring in protected areas, results in high loss. Sustainable development, community forestry, and co-management of protected areas are promising strategies to reverse mangrove losses, increasing the capacity of mangroves to support human-livelihoods and combat climate change

Characterization of the Poly-T Variant in the TOMM40 Gene in Diverse Populations

We previously discovered that a polymorphic, deoxythymidine-homopolymer (poly-T, rs10524523) in intron 6 of the TOMM40 gene is associated with age-of-onset of Alzheimer's disease and with cognitive performance in elderly. Three allele groups were defined for rs10524523, hereafter ‘523’, based on the number of ‘T’-residues: ‘Short’ (S, T≤19), ‘Long’ (L, 20≤T≤29) and ‘Very Long’ (VL, T≥30). Homopolymers, particularly long homopolymers like ‘523’, are difficult to genotype because ‘slippage’ occurs during PCR-amplification. We initially genotyped this locus by PCR-amplification followed by Sanger-sequencing. However, we recognized the need to develop a higher-throughput genotyping method that is also accurate and reliable. Here we describe a new ‘523’ genotyping assay that is simple and inexpensive to perform in a standard molecular genetics laboratory. The assay is based on the detection of differences in PCR-fragment length using capillary electrophoresis. We discuss technical problems, solutions, and the steps taken for validation. We employed the novel assay to investigate the ‘523’ allele frequencies in different ethnicities. Whites and Hispanics have similar frequencies of S/L/VL alleles (0.45/0.11/0.44 and 0.43/0.09/0.48, respectively). In African-Americans, the frequency of the L-allele (0.10) is similar to Whites and Hispanics; however, the S-allele is more prevalent (0.65) and the VL-allele is concomitantly less frequent (0.25). The allele frequencies determined using the new methodology are compared to previous reports for Ghanaian, Japanese, Korean and Han Chinese cohorts. Finally, we studied the linkage pattern between TOMM40-‘523’ and APOE alleles. In Whites and Hispanics, consistent with previous reports, the L is primarily linked to ε4, while the majority of the VL and S are linked to ε3. Interestingly, in African-Americans, Ghanaians and Japanese, there is an increased frequency of the ‘523’S-APOEε4 haplotype. These data may be used as references for ‘523’ allele and ‘523’-APOE haplotype frequencies in diverse populations for the design of research studies and clinical trials

Simple rules can guide whether land or ocean based conservation will best benefit marine ecosystems

Coastal marine ecosystems can be managed by actions undertaken both on the land and in the ocean. Quantifying and comparing the costs and benefits of actions in both realms is therefore necessary for efficient management. Here, we quantify the link between terrestrial sediment run-off and a downstream coastal marine ecosystem, and contrast the cost-effectiveness of marine and land-based conservation actions. We use a dynamic land- and sea-scape model to determine whether limited funds should be directed to one of four alternative conservation actions – protection on land, protection in the ocean, restoration on land, or restoration in the ocean – to maximise the extent of light-dependent marine benthic habitats, across decadal time-scales. We apply the model to a case study seagrass meadow in Australia. We find that marine restoration is the most cost-effective action over decadal time-scales in this system, based on a conservative estimate of the rate at which seagrass can expand into new habitat. The optimal decision will vary in different social-ecological contexts, but some basic information can guide optimal investments to counteract land and ocean based stressors: (1) marine restoration should be prioritised if the rates of marine ecosystem decline and expansion are similar and low; (2) marine protection should take precedence if the rate of marine ecosystem decline is high, or if the adjacent catchment is relatively intact and has a low rate of vegetation decline; (3) land-based actions are optimal when the ratio of marine ecosystem expansion to decline is >1.4, with terrestrial restoration typically the most cost effective; and (4) land protection should be prioritised if the catchment is relatively intact, but the rate of vegetation decline is high. These rules-of-thumb illustrate how cost-effective conservation outcomes for connected land-ocean systems can proceed without complex modelling

Fussy Feeders: Phyllosoma Larvae of the Western Rocklobster (Panulirus cygnus) Demonstrate Prey Preference

The Western Rocklobster (Panulirus cygnus) is the most valuable single species fishery in Australia and the largest single country spiny lobster fishery in the world. In recent years a well-known relationship between oceanographic conditions and lobster recruitment has become uncoupled, with significantly lower recruitment than expected, generating interest in the factors influencing survival and development of the planktonic larval stages. The nutritional requirements and wild prey of the planktotrophic larval stage (phyllosoma) of P. cygnus were previously unknown, hampering both management and aquaculture efforts for this species. Ship-board feeding trials of wild-caught mid-late stage P. cygnus phyllosoma in the eastern Indian Ocean, off the coast of Western Australia, were conducted in July 2010 and August-September 2011. In a series of experiments, phyllosoma were fed single and mixed species diets of relatively abundant potential prey items (chaetognaths, salps, and krill). Chaetognaths were consumed in 2–8 times higher numbers than the other prey, and the rate of consumption of chaetognaths increased with increasing concentration of prey. The highly variable lipid content of the phyllosoma, and the fatty acid profiles of the phyllosoma and chaetognaths, indicated they were from an oligotrophic oceanic food chain where food resources for macrozooplankton were likely to be constrained. Phyllosoma fed chaetognaths over 6 days showed significant changes in some fatty acids and tended to accumulate lipid, indicating an improvement in overall nutritional condition. The discovery of a preferred prey for P. cygnus will provide a basis for future oceanographic, management and aquaculture research for this economically and ecologically valuable species

Phasevarions Mediate Random Switching of Gene Expression in Pathogenic Neisseria

Many host-adapted bacterial pathogens contain DNA methyltransferases (mod genes) that are subject to phase-variable expression (high-frequency reversible ON/OFF switching of gene expression). In Haemophilus influenzae, the random switching of the modA gene controls expression of a phase-variable regulon of genes (a “phasevarion”), via differential methylation of the genome in the modA ON and OFF states. Phase-variable mod genes are also present in Neisseria meningitidis and Neisseria gonorrhoeae, suggesting that phasevarions may occur in these important human pathogens. Phylogenetic studies on phase-variable mod genes associated with type III restriction modification (R-M) systems revealed that these organisms have two distinct mod genes—modA and modB. There are also distinct alleles of modA (abundant: modA11, 12, 13; minor: modA4, 15, 18) and modB (modB1, 2). These alleles differ only in their DNA recognition domain. ModA11 was only found in N. meningitidis and modA13 only in N. gonorrhoeae. The recognition site for the modA13 methyltransferase in N. gonorrhoeae strain FA1090 was identified as 5′-AGAAA-3′. Mutant strains lacking the modA11, 12 or 13 genes were made in N. meningitidis and N. gonorrhoeae and their phenotype analyzed in comparison to a corresponding mod ON wild-type strain. Microarray analysis revealed that in all three modA alleles multiple genes were either upregulated or downregulated, some of which were virulence-associated. For example, in N. meningitidis MC58 (modA11), differentially expressed genes included those encoding the candidate vaccine antigens lactoferrin binding proteins A and B. Functional studies using N. gonorrhoeae FA1090 and the clinical isolate O1G1370 confirmed that modA13 ON and OFF strains have distinct phenotypes in antimicrobial resistance, in a primary human cervical epithelial cell model of infection, and in biofilm formation. This study, in conjunction with our previous work in H. influenzae, indicates that phasevarions may be a common strategy used by host-adapted bacterial pathogens to randomly switch between “differentiated” cell types