Improving the diversity of resistance mechanisms available in wheat to combat Fusarium ear blight disease

Fusarium ear blight (FEB) is a disease of wheat and small grain cereals, caused by the fungi Fusarium culmorum and Fusarium graminearum. The disease causes premature bleaching of spikelets and shrivelling of the grain can result in a direct yield loss. Mycotoxins such as deoxynivalenol produced by the fungus can reduce grain quality. Breeding for resistant wheat cultivars is considered one of the best control options. Previously identified resistance has been reported in the Chinese genotype Sumai 3. The principal aim of this project was to identify novel sources of resistance to FEB. Twenty four wheat genotypes were evaluated for resistance to FEB in this project. Molecular markers linked to previously identified QTL from Sumai 3 conferring resistance were used to confirm their absence in the genotypes under investigation, and revealed that none of the genotypes under investigation contained all of the QTL for resistance. Field trials conducted over two years screening for resistance demonstrated that, although not statistically similar to Sumai 3, levels of disease were below 10% in some of the Chinese genotypes. Follow up experiments using reporter strains of Fusarium graminearum explored the accumulation of fungal biomass and the expression of the gene Tri5, which is essential for DON biosynthesis. Fungal biomass levels were not significantly different between genotypes; however expression of the Tri5 gene was significantly lower in the genotype Alsen. A previously developed wheat leaf seedling bioassay was also explored. Scanning electron microscopy revealed the presence of fungal hyphae in advance of the visible lesion during the infection course of F. culmorum. Inoculation with a Tri5 mutant strain of F. graminearum demonstrated that a lack of mycotoxin production altered the lesion type. This project has successfully identified potential novel resistance mechanisms and the future prospects for the control of this disease are discussed.EThOS - Electronic Theses Online ServiceGBUnited Kingdo

Is there a place for love in early childhood education and care in England? Early years educators’ beliefs

The importance of love for young children is well documented. Increasing numbers of young children are spending time in early years settings. The recent Government policy announcement of free childcare for children from nine months is likely to increase the number of babies attending early years settings, so the concept of love within early years education and childcare has never been more important. However, the qualifications that enable someone to work within an early years setting in England do not mention love. Similarly, love does not feature within the Statutory Framework for the Early Years Foundation Stage, which those working with our youngest children must follow. This research identified polarised opinions regarding the place of love within early childhood education and care, with some practitioners clearly uncomfortable with the idea of loving children who are not their own, whilst others believing that loving the children you work with is vital

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Improving the diversity of resistance mechanisms available in wheat to combat Fusarium Ear Blight disease

Fusarium ear blight (FEB) is a disease of wheat and small grain cereals, caused by the fungi Fusarium culmorum and Fusarium graminearum. The disease causes premature bleaching of spikelets and shrivelling of the grain can result in a direct yield loss. Mycotoxins such as deoxynivalenol produced by the fungus can reduce grain quality. Breeding for resistant wheat cultivars is considered one of the best control options. Previously identified resistance has been reported in the Chinese genotype Sumai 3. The principal aim of this project was to identify novel sources of resistance to FEB. Twenty four wheat genotypes were evaluated for resistance to FEB in this project. Molecular markers linked to previously identified QTL from Sumai 3 conferring resistance were used to confirm their absence in the genotypes under investigation, and revealed that none of the genotypes under investigation contained all of the QTL for resistance. Field trials conducted over two years screening for resistance demonstrated that, although not statistically similar to Sumai 3, levels of disease were below 10% in some of the Chinese genotypes. Follow up experiments using reporter strains of Fusarium graminearum explored the accumulation of fungal biomass and the expression of the gene Tri5, which is essential for DON biosynthesis. Fungal biomass levels were not significantly different between genotypes; however expression of the Tri5 gene was significantly lower in the genotype Alsen. A previously developed wheat leaf seedling bioassay was also explored. Scanning electron microscopy revealed the presence of fungal hyphae in advance of the visible lesion during the infection course of F. culmorum. Inoculation with a Tri5 mutant strain of F. graminearum demonstrated that a lack of mycotoxin production altered the lesion type. This project has successfully identified potential novel resistance mechanisms and the future prospects for the control of this disease are discussed

Impacts of changing climate and agronomic factors on fusarium ear blight of wheat in the UK

Climate change will have direct impacts on fusarium ear blight (FEB) in wheat crops, since weather factors greatly affect epidemics, the relative proportions of species of ear blight pathogens responsible and the production of deoxynivalenol (DON) toxin by two Fusarium species, F. graminearum and F. culmorum. Many established weather-based prediction models do not accurately predict FEB severity in the UK. One weather-based model developed with UK data suggests a slight increase in FEB severity as a direct effect of climate change. However, severity of the disease is likely to increase further due to indirect effects of climate change, such as increased cropping of grain maize, since maize debris is a potent source of inoculum of F. graminearum. To guide strategies for adaptation to climate change, further research on forecasting, management options to reduce mycotoxin production, and breeding for resistant varieties is a high priority for the UK. Adaptation strategies must also consider factors such as tillage regime, wheat cultivar (flowering time and disease resistance) and fungicide use, which also influence the severity of FEB and related toxin production.Peer reviewedFinal Accepted Versio

The evolving battle between yellow rust and wheat: implications for global food security.

Wheat (Triticum aestivum L.) is a global commodity, and its production is a key component underpinning worldwide food security. Yellow rust, also known as stripe rust, is a wheat disease caused by the fungus Puccinia striiformis Westend f. sp. tritici (Pst), and results in yield losses in most wheat growing areas. Recently, the rapid global spread of genetically diverse sexually derived Pst races, which have now largely replaced the previous clonally propagated slowly evolving endemic populations, has resulted in further challenges for the protection of global wheat yields. However, advances in the application of genomics approaches, in both the host and pathogen, combined with classical genetic approaches, pathogen and disease monitoring, provide resources to help increase the rate of genetic gain for yellow rust resistance via wheat breeding while reducing the carbon footprint of the crop. Here we review key elements in the evolving battle between the pathogen and host, with a focus on solutions to help protect future wheat production from this globally important disease

Wheat genetic loci conferring resistance to stripe rust in the face of genetically diverse races of the fungus Puccinia striiformis f. sp. tritici.

Funder: Roger Harrison TrustAnalysis of a wheat multi-founder population identified 14 yellow rust resistance QTL. For three of the four most significant QTL, haplotype analysis indicated resistance alleles were rare in European wheat. Stripe rust, or yellow rust (YR), is a major fungal disease of wheat (Triticum aestivum) caused by Puccinia striiformis Westend f. sp. tritici (Pst). Since 2011, the historically clonal European Pst races have been superseded by the rapid incursion of genetically diverse lineages, reducing the resistance of varieties previously showing durable resistance. Identification of sources of genetic resistance to such races is a high priority for wheat breeding. Here we use a wheat eight-founder multi-parent population genotyped with a 90,000 feature single nucleotide polymorphism array to genetically map YR resistance to such new Pst races. Genetic analysis of five field trials at three UK sites identified 14 quantitative trait loci (QTL) conferring resistance. Of these, four highly significant loci were consistently identified across all test environments, located on chromosomes 1A (QYr.niab-1A.1), 2A (QYr.niab-2A.1), 2B (QYr.niab-2B.1) and 2D (QYr.niab-2D.1), together explaining ~ 50% of the phenotypic variation. Analysis of these four QTL in two-way and three-way combinations showed combinations conferred greater resistance than single QTL, and genetic markers were developed that distinguished resistant and susceptible alleles. Haplotype analysis in a collection of wheat varieties found that the haplotypes associated with YR resistance at three of these four major loci were rare (≤ 7%) in European wheat, highlighting their potential utility for future targeted improvement of disease resistance. Notably, the physical interval for QTL QYr.niab-2B.1 contained five nucleotide-binding leucine-rich repeat candidate genes with integrated BED domains, of which two corresponded to the cloned resistance genes Yr7 and Yr5/YrSp

Hidden in plain sight: a molecular field survey of three wheat leaf blotch fungal diseases in North-Western Europe shows co-infection is widespread.

Wheat (Triticum aestivum L.) yields are commonly affected by foliar infection by fungal pathogens. Of these, three wheat leaf blotch fungal diseases, septoria nodorum blotch (SNB), tan spot (TS) and septoria tritici blotch (STB), caused by Parastagonospora nodorum (Pn), Pyrenophora tritici-repentis (Ptr) and Zymoseptoria tritici (Zt), respectively, induce major yield losses. Infection results in necrotic areas on the leaf, and it is often difficult to determine the underlying causative pathogen from visible symptoms alone, especially in mixed infections. Here, a regional survey of 330 wheat samples collected across three seasons (years 2015–2017) from four north-west European countries was undertaken. Using quantitative polymerase chain reaction (qPCR) assays specific for each pathogen, as well as disease assessment of leaf materials, distinct regional differences were identified. Two-thirds (65%) of all samples harbored at least two of the three pathogens. Norway had high SNB abundance, but also showed mixed infections of SNB, TS and STB. In Germany, TS was prevalent, with STB also common. Danish samples commonly possessed all three pathogens, with STB prevalent, followed by TS and SNB. The UK had a major prevalence of STB with minimal occurrence of TS and SNB. Across all samples, qPCR identified Zt, Pn and Ptr in 90%, 54% and 57% of samples, respectively. For each pathogen, average disease levels via visual assessment showed modest positive correlation with fungal DNA concentrations (R2 = 0.13–0.32). Overall, our study highlights that the occurrence of mixed infection is common and widespread, with important implications for wheat disease management and breeding strategies