Maskless etching of silicon using patterned microdischarges

Microdischarges in flexible copper-polyimide structures with hole diameters of 200 µm have been used as stencil masks to pattern bare silicon in CF4/Ar chemistry. The discharges were operated at 20 Torr using the substrate as the cathode, achieving etch rates greater than 7 µm/min. Optical emission spectroscopy provides evidence of excited fluorine atoms. The etch profiles show a peculiar shape attributed to plasma expansion into the etched void. Forming discharges in multiple hole and line shapes permits direct pattern transfer in silicon and could be an alternative to ultrasonic milling and laser drilling

Soil respiration in a tropical montane grassland ecosystem is largely heterotroph-driven and increases under simulated warming

Soil respiration, a major source of atmospheric carbon (C), can feed into climate warming, which in turn can amplify soil CO2 efflux by affecting respiration by plant roots, arbuscular mycorrhizal fungi (AMF) and other heterotrophic organisms. Although tropical ecosystems contribute >60% of the global soil CO2 efflux, there is currently a dearth of data on tropical soil respiration responses to increasing temperature. Here we report a simulated warming and soil respiration partitioning experiment in tropical montane grasslands in the Western Ghats in southern India. The study aimed to (a) evaluate soil respiration responses to warming, (b) assess the relative contributions of autotrophic and heterotrophic components to soil respiration, and (c) assess the roles of soil temperature and soil moisture in influencing soil respiration in this system. Soil respiration was tightly coupled with instantaneous soil moisture availability in both the warmed and control plots, with CO2 efflux levels peaking during the wet season. Soil warming by ˜1.4 °C nearly doubled soil respiration from 0.62 g CO2 m−2 hr−1 under ambient conditions to 1.16 g CO2 m−2 hr−1 under warmed conditions. Warming effects on soil CO2 efflux were dependent on water availability, with greater relative increases in soil respiration observed under conditions of low (with a minimum of 2.6%), compared to high (with a maximum of 64.3%), soil moisture. Heterotrophs contributed to the majority of soil CO2 efflux, with respiration remaining unchanged when roots and/or AMF hyphae were excluded as the partitioning treatments were statistically indistinguishable. Overall, our results indicate that future warming is likely to substantially increase the largely heterotroph-driven soil C fluxes in this tropical montane grassland ecosystem

The effect of cis- and trans-clomiphene citrate on sialic acid in the uterus, cervix and vagina of rats during delayed implantation

The comparative effects of cis- and trans-clomiphene and oestradiol-17β on the sialic acid concentration in the uterus, cervix and vagina were studied in rats during experimentally induced delayed implantation. The cis- or trans-isomer of clomiphene caused a progressive dose-dependent increase in sialic acid in the uterus and cervix whereas vaginal sialic acid decreased with increase in the dose of the respective compounds. Cis- and trans-clomiphene and oestradiol-17β all caused a sharp increase in the sialic acid content of the uterus, cervix and vagina 6 hr after the administration of the respective compounds. There was a decrease in sialic acid in all the three tissues at subsequent time intervals in cis-clomiphene or oestradiol-treated rats. The oestrogenic effects of trans-clomiphene lasted even up to 48 hr in all three reproductive tract tissues, indicating that trans-clomiphene is more oestrogenic than the cis-isomer. Differences in the response of the uterus, cervix and vagina to administration of the compounds are discussed in relation to their embryological origin

‘Foresting’ the grassland: Historical management legacies in forest-grassland mosaics in southern India, and lessons for the conservation of tropical grassy biomes

Colonial encounters with tropical ecosystems were primarily driven by profit-oriented management practices; witness the extensive network of timber and forestry practices that were set up across colonial India. In contrast, the colonial engagement with the montane forest-grassland mosaics of the higher reaches of the Western Ghats in southern India was marked by intensive investment in vegetation management by colonial foresters that yielded no profits. In this archival study, we trace the history of extensive vegetation transformation in this landscape from the early nineteenth to the early twentieth century. We show how the misperception that the grasslands within this mosaic must have resulted from tree felling, fire-setting and buffalo grazing by indigenous communities led colonial foresters into a century-long effort at ‘foresting’ the grasslands, primarily through large-scale planting of exotic tree species. These efforts persisted despite economic losses and ecological evidence that native tree seedlings planted in the grasslands repeatedly failed to establish. These policies continued unabated into the late twentieth century in newly independent India. Today, the once picturesque landscapes of these ancient forest-grassland mosaics are diminished by large-scale plantations of exotic species. Some of these species have become invasive and pose significant threats to the remnant natural grasslands. While this historical narrative is set in the forest-grassland mosaics of southern India, it finds striking parallels in the current day, with grasslands and savannas globally threatened by the misperception that they are ‘degraded ecosystems’ that can be ‘forested’ or converted to other ‘productive’ land uses. We suggest that this case history portends the potential fates of many of earth's threatened tropical grasslands and savannas

Sequence fingerprints distinguish erroneous from correct predictions of Intrinsically Disordered Protein Regions

More than sixty prediction methods for intrinsically disordered proteins (IDPs) have been developed over the years, many of which are accessible on the world-wide web. Nearly, all of these predictors give balanced accuracies in the ~65% to ~80% range. Since predictors are not perfect, further studies are required to uncover the role of amino acid residues in native IDP as compared to predicted IDP regions. In the present work, we make use of sequences of 100% predicted IDP regions, false positive disorder predictions, and experimentally determined IDP regions to distinguish the characteristics of native versus predicted IDP regions. A higher occurrence of asparagine is observed in sequences of native IDP regions but not in sequences of false positive predictions of IDP regions. The occurrences of certain combinations of amino acids at the pentapeptide level provide a distinguishing feature in the IDPs with respect to globular proteins. The distinguishing features presented in this paper provide insights into the sequence fingerprints of amino acid residues in experimentally-determined as compared to predicted IDP regions. These observations and additional work along these lines should enable the development of improvements in the accuracy of disorder prediction algorithm