Malaria vaccine coverage estimation using age-eligible populations and service user denominators in Kenya

Background The World Health Organization approved the RTS,S/AS01 malaria vaccine for wider rollout, and Kenya participated in a phased pilot implementation from 2019 to understand its impact under routine conditions. Vaccine delivery requires coverage measures at national and sub-national levels to evaluate progress over time. This study aimed to estimate the coverage of the RTS,S/AS01 vaccine during the first 36 months of the Kenyan pilot implementation. Methods Monthly dose-specific immunization data for 23 sub-counties were obtained from routine health information systems at the facility level for 2019–2022. Coverage of each RTS,S/AS01 dose was determined using reported doses as a numerator and service-based (Penta 1 and Measles) or population (projected infant populations from WorldPop) as denominators. Descriptive statistics of vaccine delivery, dropout rates and coverage estimates were computed across the 36-month implementation period. Results Over 36 months, 818,648 RTSS/AS01 doses were administered. Facilities managed by the Ministry of Health and faith-based organizations accounted for over 88% of all vaccines delivered. Overall, service-based malaria vaccine coverage was 96%, 87%, 78%, and 39% for doses 1–4 respectively. Using a population-derived denominator for age-eligible children, vaccine coverage was 78%, 68%, 57%, and 24% for doses 1–4, respectively. Of the children that received measles dose 1 vaccines delivered at 9 months (coverage: 95%), 82% received RTSS/AS01 dose 3, only 66% of children who received measles dose 2 at 18 months (coverage: 59%) also received dose 4. Conclusion The implementation programme successfully maintained high levels of coverage for the first three doses of RTSS/AS01 among children defined as EPI service users up to 9 months of age but had much lower coverage within the community with up to 1 in 5 children not receiving the vaccine. Consistent with vaccines delivered over the age of 1 year, coverage of the fourth malaria dose was low. Vaccine uptake, service access and dropout rates for malaria vaccines require constant monitoring and intervention to ensure maximum protection is conferred

Depositional and diagenetic constraints on the abundance and spatial variability of carbonate-associated sulfate

Acknowledgment is made to the donors of the American Chemical Society Petroleum Research Fund (#57548-ND2) for partial support of this research.Marine carbonate rocks are composed, in varying abundance, of cement, micrite, abiotic grains and fossils, which can provide information about the physical and chemical environments in which they formed. Geochemical analyses of these carbonates are not always interpreted alongside the wealth of geologic (including petrographic) information available, resulting in potentially faulty reconstructions of biogeochemical and environmental conditions. These concerns have prompted closer scrutiny of the effect of depositional lithofacies and diagenesis on carbonate proxies. Here, we have combined X-ray Absorption Near Edge Structure (XANES) spectroscopy and μ-X-ray Fluorescence (μ-XRF) imaging to map the speciation and abundance of sulfur in carbonate petrographic thin sections in Upper Ordovician carbonates from Anticosti Island, Canada and early Silurian carbonates from Gotland, Sweden, across multiple depositional facies. Lithofacies and fossil communities between Anticosti Island and Gotland are similar, which allows for comparison of changes in the dominant S species and their abundance in separate basins, associated with variations in (glacio)eustatic sea level. Sulfide abundance is greatest in mudstone, wackestone and packstone facies, where interstitial micrite hosts abundant pyrite. Sulfate abundance, as carbonate-associated sulfate (CAS), varies within individual fossil fragments, as well as within the same fossil phylum and is particularly high in unaltered brachiopods. In contrast, sulfate abundance is generally very low in micrite (near the detection limit) and generally arises in situ from sulfide that has been oxidized as opposed to true CAS. In different cement fabrics, sulfate abundance is greatest in drusy, pore-filling cements. Organic sulfur compounds are also detected and, although low in abundance, are mostly found within micrite. The detection and characterization of both inorganic sulfur and organic sulfur compounds provides a platform to understand early processes of biomineralization. This approach will broaden our understanding of the source of inorganically bound sulfate in ancient carbonates, as well as the effect of depositional setting and diagenesis on CAS incorporation, (re)mobilization, and ultimate abundance in sedimentary carbonates. Additionally, this work has implications for the CAS isotopic value of individual carbonate components that may affect interpretations of stratigraphic variability of numerous CAS sections throughout Earth history.PostprintPeer reviewe

Nicaragua Block Press

Friends In Action International (FIA), our project partner, is assisting the Rama people of Nicaragua in relocating from an overpopulated island to the mainland. Our team has developed a manual press for the Rama people to produce compressed earth blocks from local materials for construction of their homes. After testing an initial prototype of the press in Nicaragua it was determined that the press needed more durability. After testing two presses with welded chambers manufactured by E&E Metal Fab Inc., further modifications were required such as welding chamber skirts, adding a lid handle, and applying rust prevention coating. Once both presses reached a workable state, the team made blocks using different mixtures to determine the composition for the highest strength. Blocks were tested for water absorption and for strength in compression, and met published standards for compressed earth blocks (CEB). The team also developed a user manual complete with manufacturing instructions, operating procedures, maintenance suggestions, and exploded subassembly views. Lastly, our team has drafted a one-page user guide for quick reference on-site and will deliver everything to FIA at the end of the semester.https://mosaic.messiah.edu/engr2020/1002/thumbnail.jp

Multivariate and spatial assessment of water quality of the Lower Pra basin, Ghana

In this paper, multivariate statistical approaches based on principal component analysis (PCA) coupled with spatial assessment were employed to assess physicochemical parameters (turbidity, pH, electrical conductivity, total dissolved solids, total suspended solids, nitrates, nitrite, phosphate, ammonium, total hardness, total alkalinity, dissolved oxygen, BOD, Na, Cl, Ca, HCO3, SO4 and F) and heavy metals (Cu, Cd, Fe, Mn, Pb, Hg and Zn) of more than fifty five (55) water samples from 20 mining and non-communities within the lower Pra basin. The correlation matrix, however, shows significant inter-metal relationships (p<0.05 and p<0.01). The Fe–Mn correlation is recognized as the weakest with a correlation coefficient r=0.422. Also, significant strong correlations (r>0.5) were found between Zn – Cd, Pb–Zn, Pb – Cd, Pb – Cu, Cu – Zn, Cu – Cd, Hg – Zn, Hg – Cd, Hg - Cu and two more toxic metals, Hg and Pb. From the results of the principal component analysis on surface water in the study, component model 1 is interpreted to be contaminated water with mercury. This is because Hg has the highest correlation value (0.985). Within the study area, illegal artisanal small scale miners (popularly referred to as galamsey) use mercury extensively in their activities. The mercury is a steady source of contamination of the surface water in the Lower Pra Basin area. The use of mercury in gold mining by the Artisanal Small Scale Miners constitutes a point source of contamination. Keywords: Multivariate statistical techniques, Principal component analysis, Lower Pra Basin, Heavy Metal

Insights into past ocean proxies from micron-scale mapping of sulfur species in carbonates

Laboratory work and analyses were supported by a Steve Fossett Fellowship awarded to Rose; a U.S. Department of Energy (DOE) Biological and Environmental Research grant (DE-SC0014613), U.S. National Science Foundation (NSF) grants (EAR-0951509, 1229370), an Agouron Institute (California, USA) grant, a Packard (The David and Lucile Packard Foundation, California, USA) Fellowship, and a Hanse-Wissenschaftskolleg (Germany) Fellowship awarded to Fike; and an NSF Career Grant (EAR-1056480) awarded to Catalano. Use of the Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory (California, USA), is supported by the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences under contract DE-AC02-76SF00515. GeoSoilEnviroCARS is supported by the NSF–Earth Sciences (EAR-1634415) and DOE–GeoSciences (DE-FG02-94ER14466).Geological reconstructions of global ocean chemistry and atmospheric oxygen concentrations over Earth history commonly rely on the abundance and stable isotopic composition (δ34S) of sulfur-bearing compounds. Carbonate-associated sulfate (CAS), sulfate bound within a calcium carbonate mineral matrix, is among the most commonly interrogated sulfur mineral phases. However, recent work has revealed variability in δ34SCAS values that cannot be explained by evolution of the marine sulfate reservoir, challenging the common interpretation that CAS is inherently a high-fidelity record of seawater sulfate. To investigate the source of this inconsistency, we used X-ray spectromicroscopy to map the micron-scale distribution of S-bearing sedimentary phases in Ordovician-aged (ca. 444 Ma) shallow marine carbonates from Anticosti Island, Québec, Canada. Clear differences in the abundance of CAS are observed between cements and fossils, suggesting that variance in bulk-rock data could be a consequence of component mixing and that coupled synchrotron-petrographic screening can identify the carbonate components that are most likely to retain primary CAS. Furthermore, we observe multiple, distinct forms of sulfate (both inorganic and organic). Differences in these forms among fossil clades could provide new insights into biomineralization mechanisms in extinct organisms.PostprintPeer reviewe

Laser Chemosensor with Rapid Responsivity and Inherent Memory Based on a Polymer of Intrinsic Microporosity

This work explores the use of a polymer of intrinsic microporosity (PIM-1) as the active layer within a laser sensor to detect nitroaromatic-based explosive vapors. We show successful detection of dinitrobenzene (DNB) by monitoring the real-time photoluminescence. We also show that PIM-1 has an inherent memory, so that it accumulates the analyte during exposure. In addition, the optical gain and refractive index of the polymer were studied by amplified spontaneous emission and variable-angle ellipsometry, respectively. A second-order distributed feedback PIM-1 laser sensor was fabricated and found to show an increase in laser threshold of 2.5 times and a reduction of the laser slope efficiency by 4.4 times after a 5-min exposure to the DNB vapor. For pumping at 2 times threshold, the lasing action was stopped within 30 s indicating that PIM-1 has a very fast responsivity and as such has a potential sensing ability for ultra-low-concentration explosives

UK science press officers, professional vision and the generation of expectations

Science press officers can play an integral role in helping promote expectations and hype about biomedical research. Using this as a starting point, this article draws on interviews with 10 UK-based science press officers, which explored how they view their role as science reporters and as generators of expectations. Using Goodwin’s notion of ‘professional vision’, we argue that science press officers have a specific professional vision that shapes how they produce biomedical press releases, engage in promotion of biomedical research and make sense of hype. We discuss how these insights can contribute to the sociology of expectations, as well as inform responsible science communication.This project was funded by the Wellcome Trust (Wellcome Trust Biomedical Strategic Award 086034)

Mapping the cellular landscape of Atlantic salmon head kidney by single cell and single nucleus transcriptomics

Single-cell transcriptomics is the current gold standard for global gene expression profiling, not only in mammals and model species, but also in non-model fish species. This is a rapidly expanding field, creating a deeper understanding of tissue heterogeneity and the distinct functions of individual cells, making it possible to explore the complexities of immunology and gene expression on a highly resolved level. In this study, we compared two single cell transcriptomic approaches to investigate cellular heterogeneity within the head kidney of healthy farmed Atlantic salmon (Salmo salar). We compared 14,149 cell transcriptomes assayed by single cell RNA-seq (scRNA-seq) with 18,067 nuclei transcriptomes captured by single nucleus RNA-Seq (snRNA-seq). Both approaches detected eight major cell populations in common: granulocytes, heamatopoietic stem cells, erythrocytes, mononuclear phagocytes, thrombocytes, B cells, NK-like cells, and T cells. Four additional cell types, endothelial, epithelial, interrenal, and mesenchymal cells, were detected in the snRNA-seq dataset, but appeared to be lost during preparation of the single cell suspension submitted for scRNA-seq library generation. We identified additional heterogeneity and subpopulations within the B cells, T cells, and endothelial cells, and revealed developmental trajectories of heamatopoietic stem cells into differentiated granulocyte and mononuclear phagocyte populations. Gene expression profiles of B cell subtypes revealed distinct IgM and IgT-skewed resting B cell lineages and provided insights into the regulation of B cell lymphopoiesis. The analysis revealed eleven T cell sub-populations, displaying a level of T cell heterogeneity in salmon head kidney comparable to that observed in mammals, including distinct subsets of cd4/cd8-negative T cells, such as tcrγ positive, progenitor-like, and cytotoxic cells. Although snRNA-seq and scRNA-seq were both useful to resolve cell type-specific expression in the Atlantic salmon head kidney, the snRNA-seq pipeline was overall more robust in identifying several cell types and subpopulations. While scRNA-seq displayed higher levels of ribosomal and mitochondrial genes, snRNA-seq captured more transcription factor genes. However, only scRNA-seq-generated data was useful for cell trajectory inference within the myeloid lineage. In conclusion, this study systematically outlines the relative merits of scRNA-seq and snRNA-seq in Atlantic salmon, enhances understanding of teleost immune cell lineages, and provides a comprehensive list of markers for identifying major cell populations in the head kidney with significant immune relevance.</p

Mapping the cellular landscape of Atlantic salmon head kidney by single cell and single nucleus transcriptomics

The study was funded by grants from the Research Council Norway (ID:302191), the University of Edinburgh's Data Driven Innovation Initiative (Scottish Funding Council Beacon ‘Building Back Better’ Call), and the Biotechnology and Biological Sciences Research Council, including the institutional strategic programme grants BBS/E/D/10002071, BBS/E/RL/230001C, BBS/E/D/20002174, BBS/E/RL/230002B, and the responsive mode grants BB/W005859/1 and BB/W008564/1. NH is supported by a Wellcome Trust Senior Research Fellowship in Clinical Science (ref. 219542/Z/19/Z). UG is supported by the Research Council of Norway (ID:274635).Peer reviewe