2,459 research outputs found
Estimating integrated cloud liquid water from extended time observations of solar irradiance
An analysis technique used to estimate the integrated liquid water content (LWC) from the measured solar irradiance is described. The cloud transmittance is computed by dividing the irradiance measured at some time by a clear sky value obtained at the same time on a cloudless day. From the transmittance and the zenith angle, the cloud LWC is computed using the radiative transfer parameterizations of Stephens et al., (1984). The results are compared with 17 days of mm-wave (20.6 and 31.65 GHz) radiometer measurements made during the First ISCCP Regional Experiment (FIRE) Intensive Field Observation (IFO) in July of 1987
A realistic two-lane traffic model for highway traffic
A two-lane extension of a recently proposed cellular automaton model for
traffic flow is discussed. The analysis focuses on the reproduction of the lane
usage inversion and the density dependence of the number of lane changes. It is
shown that the single-lane dynamics can be extended to the two-lane case
without changing the basic properties of the model which are known to be in
good agreement with empirical single-vehicle data. Therefore it is possible to
reproduce various empirically observed two-lane phenomena, like the
synchronization of the lanes, without fine-tuning of the model parameters
On the Microscopic Origin of Cholesteric Pitch
We present a microscopic analysis of the instability of the nematic phase to
chirality when molecular chirality is introduced perturbatively. We show that
previously neglected short-range biaxial correlations play a crucial role in
determining the cholesteric pitch. We propose an order parameter which
quantifies the chirality of a molecule.Comment: RevTeX 3.0, 4 pages, one included eps figure. Published versio
Recently integrated Alu elements and human genomic diversity
A comprehensive analysis of two Alu Y lineage subfamilies was undertaken to assess Alu-associated genomic diversity and identify new Alu insertion polymorphisms for the study of human population genetics. Recently integrated Alu elements (283) from the Yg6 and Yi6 subfamilies were analyzed by polymerase chain reaction (PCR), and 25 of the loci analyzed were polymorphic for insertion presence/absence within the genomes of a diverse array of human populations. These newly identified Alu insertion polymorphisms will be useful tools for the study of human genomic diversity. Our screening of the Alu insertion loci also resulted in the recovery of several young Alu elements that resided at orthologous positions in nonhuman primate genomes. Sequence analysis demonstrated these young Alu insertions were the products of gene conversion events of older, preexisting Alu elements or independent parallel forward insertions of older Alu elements in the same short genomic region. The level of gene conversion between Alu elements suggests that it may have an influence on the single nucleotide polymorphism within Alu elements in the genome. We have also identified two genomic deletions associated with the retroposition and insertion of Alu Y lineage elements into the human genome. This type of Alu retroposition-mediated genomic deletion is a novel source of lineage-specific evolution within primate genomes
The CMB and the measure of the multiverse
In the context of eternal inflation, cosmological predictions depend on the
choice of measure to regulate the diverging spacetime volume. The spectrum of
inflationary perturbations is no exception, as we demonstrate by comparing the
predictions of the fat geodesic and causal patch measures. To highlight the
effect of the measure---as opposed to any effects related to a possible
landscape of vacua---we take the cosmological model, including the model of
inflation, to be fixed. We also condition on the average CMB temperature
accompanying the measurement. Both measures predict a 1-point expectation value
for the gauge-invariant Newtonian potential, which takes the form of a
(scale-dependent) monopole, in addition to a related contribution to the
3-point correlation function, with the detailed form of these quantities
differing between the measures. However, for both measures both effects are
well within cosmic variance. Our results make clear the theoretical relevance
of the measure, and at the same time validate the standard inflationary
predictions in the context of eternal inflation.Comment: 28 pages; v2: reference added, some clarification
Scattering and absorption of ultracold atoms by nanotubes
We investigate theoretically how cold atoms, including Bose-Einstein
condensates, are scattered from, or absorbed by nanotubes with a view to
analysing recent experiments. In particular we consider the role of potential
strength, quantum reflection, atomic interactions and tube vibrations on atom
loss rates. Lifshitz theory calculations deliver a significantly stronger
scattering potential than that found in experiment and we discuss possible
reasons for this. We find that the scattering potential for dielectric tubes
can be calculated to a good approximation using a modified pairwise summation
approach, which is efficient and easily extendable to arbitrary geometries.
Quantum reflection of atoms from a nanotube may become a significant factor at
low temperatures, especially for non-metallic tubes. Interatomic interactions
are shown to increase the rate at which atoms are lost to the nanotube and lead
to non-trivial dynamics. Thermal nanotube vibrations do not significantly
increase loss rates or reduce condensate fractions, but lower frequency
oscillations can dramatically heat the cloud.Comment: 7 pages, 4 figure
Transient Expression of Tetrameric Recombinant Human Butyrylcholinesterase in Nicotiana benthamiana.
To optimize the expression, extraction and purification of plant-derived tetrameric recombinant human butyrylcholinesterase (prBChE), we describe the development and use of plant viral amplicon-based gene expression system; Tobacco Mosaic Virus (TMV) RNA-based overexpression vector (TRBO) to express enzymatically active FLAG-tagged plant made recombinant butyrylcholinesterase (rBChE) in Nicotiana benthamiana leaves using transient agroinfiltration. Two gene expression cassettes were designed to express the recombinant protein in either the ER or to the apoplastic compartment. Leaf homogenization was used to isolate ER-retained recombinant butyrylcholinesterase (prBChE-ER) while apoplast-targeted rBChE was isolated by either leaf homogenization (prBChE) or vacuum-extraction of apoplastic wash fluid (prBChE-AWF). rBChE from apoplast wash fluid had a higher specific activity but lower enzyme yield than leaf homogenate. To optimize the isolation and purification of total recombinant protein from leaf homogenates, an acidic extraction buffer was used. The acidic extraction buffer yielded >95% enzymatically active tetrameric rBChE as verified by Coomassie stained and native gel electrophoresis. Furthermore, when compared to human butyrylcholinesterase, the prBChE was found to be similar in terms of tetramerization and enzyme kinetics. The N-linked glycan profile of purified prBChE-ER was found to be mostly high mannose structures while the N-linked glycans on prBChE-AWF were primarily complex. The glycan profile of the prBChE leaf homogenates showed a mixture of high mannose, complex and paucimannose type N-glycans. These findings demonstrate the ability of plants to produce rBChE that is enzymatically active and whose oligomeric state is comparable to mammalian butyrylcholinesterase. The process of plant made rBChE tetramerization and strategies for improving its pharmacokinetics properties are also discussed
Structures of Ruthenium-modified Pseudomonas aeruginosa Azurin and [Ru(2,2’-bipyridine)_2(imidazole)_2)]SO_4•10H_2O
The crystal structure of Ru(2,2'-bipyridine)_2(imidazole)(His83)azurin (RuAz) has been determined to 2.3 Å ¬resolution by X-ray crystallography. The spectroscopic and thermodynamic properties of both the native protein and [Ru(2,2'-bipyridine)_2(imidazole)_2]^(2+) are maintained in the modified protein. Dark-green RuAz crystals grown from PEG 4000, LiNO_3, CuCl_2 and Tris buffer are monoclinic, belong to the space group C2 and have cell parameters a = 100.6, b = 35.4, c = 74.7 Å and β = 106.5°. In addition, [Ru(2,2'-bipyridine)_2(imidazole)_2]SO_4•10H_2O was synthesized, crystallized and structurally characterized by X-ray crystallography. Red-brown crystals of this complex are monoclinic, space group P2_1/n, unit-cell parameters a = 13.230 (2), b = 18.197 (4), c = 16.126 (4) Å, β = 108.65 (2)°. Stereochemical parameters for the refinement of Ru(2,2'-bipyridine)_2(imidazole)(His83) were taken from the atomic coordinates of [Ru(2,2'-bipyridine)_2(imidazole)_2]^(2+). The structure of RuAz confirms that His83 is the only site of chemical modification and that the native azurin structure is not perturbed significantly by the ruthenium label
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