Genetic characterization of Tunisian lime genotypes using pomological traits

Citrus genus includes a wide number of species that have been long cultivated and well adapted in Tunisia. It is represented by small number of plantations and considered as underutilized in Tunisia. Our goal was to genetically characterize Tunisian lime genotypes to obtain data useful for gene conservation and breeding purposes. The survey of genotypes was conducted in the Cap Bon region, where citrus cultivation is the most spread. Sixteen quantitative and 19 qualitative parameters were evaluated. The observed accessions belonged to three different species: Citrus limetta, Citrus latifolia (limes Byrsa), and Citrus limettioides (limes of Palestine) according to Tanaka classification. Principal component analysis confirmed these classifications. Four-cell analysis (FCA) was used to determine the most threatened genotypes. Quantitative traits were evaluated and allowed the discrimination between genotypes. Many quantitative traits of fruit and juice were highly positively and significantly correlated. Phenotypic diversity was determined using Shannon–Wiener diversity index (H’). The highest value of diversity index was observed for both vesicle thickness and thickness of segment walls (H’ = 0.98). Intermediate values were observed for both fruit axis (H’= 0.49) and pulp firmness (H’ = 0.43). However, fruit shape (H’ = 0.24), shape of fruit apex (H’ = 0.24), and vesicle length (H’ = 0.33) presented the lowest values of diversity index. Current findings will be useful to conserve threatened genotypes ex situ and on farm and also will guide strategic conservation on Citrus genetic resources for future breeding programs

Genetic Characterization of Tunisian Lime Genotypes Using Pomological Traits

Citrus genus includes a wide number of species that have been long cultivated and well adapted in Tunisia. It is represented by small number of plantations and considered as underutilized in Tunisia. Our goal was to genetically characterize Tunisian lime genotypes to obtain data useful for gene conservation and breeding purposes. The survey of genotypes was conducted in the Cap Bon region, where citrus cultivation is the most spread. Sixteen quantitative and 19 qualitative parameters were evaluated. The observed accessions belonged to three different species: Citrus limetta, Citrus latifolia (limes Byrsa), and Citrus limettioides (limes of Palestine) according to Tanaka classification. Principal component analysis confirmed these classifications. Four-cell analysis (FCA) was used to determine the most threatened genotypes. Quantitative traits were evaluated and allowed the discrimination between genotypes. Many quantitative traits of fruit and juice were highly positively and significantly correlated. Phenotypic diversity was determined using Shannon–Wiener diversity index (H’). The highest value of diversity index was observed for both vesicle thickness and thickness of segment walls (H’ = 0.98). Intermediate values were observed for both fruit axis (H’= 0.49) and pulp firmness (H’ = 0.43). However, fruit shape (H’ = 0.24), shape of fruit apex (H’ = 0.24), and vesicle length (H’ = 0.33) presented the lowest values of diversity index. Current findings will be useful to conserve threatened genotypes ex situ and on farm and also will guide strategic conservation on Citrus genetic resources for future breeding programs

Using morfological characters and simple sequence repeat (SSR) markers to characterize Tunisian fig (Ficus caricaL.) cultivars

We used simple sequence repeat markers and 25 morphological characters to characterize 18 Tunisian fig (Ficus carica L.) cultivars. Morphological traits suggested a high level of variation in the germplasm. Principal component analysis (PCA) differentiated the studied cultivars. In the derived dendrogram the cultivars clustered independently of their geographical origin and sex of trees. Simple sequence repeat (SSR) markers were used to compare genetic polymorphism with the observed phenotypic variation. Using six microsatellite primers, 39 alleles and 59 genotypes were identified. The high values of polymorphism information content (PIC), ranging from 0.67 to 0.85, confirmed the effectiveness of microsatellite analysis for determining molecular polymorphism and characterizing the studied cultivars. Multilocus genotyping unambiguously distinguished all the cultivars. The ability of each type of feature to differentiate cultivars of this crop is discussed

Genetic Characterization of Apulian Olive Germplasm as Potential Source in New Breeding Programs

The olive is a fruit tree species with a century-old history of cultivation in the Mediterranean basin. In Apulia (Southern Italy), the olive is of main social, cultural and economic importance, and represents a hallmark of the rural landscape. However, olive cultivation in this region is threatened by the recent spread of the olive quick decline syndrome (OQDS) disease, thus there is an urgent need to explore biodiversity and search for genetic sources of resistance. Herein, a genetic variation in Apulian olive germplasm was explored, as a first step to identify genotypes with enhanced bio-agronomic traits, including resistance to OQDS. A preselected set of nuclear microsatellite markers allowed the acquisition of genotypic profiles, and to define genetic relationships between Apulian germplasm and widespread cultivars. The analysis highlighted the broad genetic variation in Apulian accessions and the presence of different unique genetic profiles. The results of this study lay a foundation for the organization of new breeding programs for olive genetic improvement

Development of an SSR-based identification key for Tunisian local almonds

19 Pags., 4 Figs., 2 Tabls.Ten simple sequence repeat (SSR) loci were used to study polymorphism in 54 almond genotypes. All genotypes used in this study originated from almond-growing areas in Tunisia with different climatic conditions ranging from the sub-humid to the arid and are preserved in the national collection at Sidi Bouzid. Using ten SSR, 130 alleles and 250 genotypes were revealed. In order to develop an identification key for each accession, the data were analysed separately for each microsatellite marker. The most polymorphic microsatellite (CPDCT042) was used as a first marker. Two microsatellite loci (CPDCT042 and CPDCT025) were sufficient to discriminate among all accessions studied. Neighbour-joining clustering and principal coordinate analysis were performed to arrange the genotypes according to their genetic relationships and origin. The results are discussed in the context of almond collection management, conformity checks, identification of homonyms, and screening of the local almond germplasm. Furthermore, this microsatellite-based key is a first step toward a marker-assisted identification almond database.Financial support was provided in part by the Tunisian Ministry of Higher Education, Scientific Research and Technology, the Spanish Ministry of Science and Innovation (AGL2008-00283/AGR co-financed by FEDER), the Aragon Government (Group A44), and the Agencia Española de Cooperación Internacional (A/5339/06 and A/8334/07).Peer reviewe