Robust Bayesian Inference for Measurement Error Models

Measurement error occurs when a set of covariates influencing a response variable are corrupted by noise. This can lead to misleading inference outcomes, particularly in problems where accurately estimating the relationship between covariates and response variables is crucial, such as causal effect estimation. Existing methods for dealing with measurement error often rely on strong assumptions such as knowledge of the error distribution or its variance and availability of replicated measurements of the covariates. We propose a Bayesian Nonparametric Learning framework which is robust to mismeasured covariates, does not require the preceding assumptions, and is able to incorporate prior beliefs about the true error distribution. Our approach gives rise to two methods that are robust to measurement error via different loss functions: one based on the Total Least Squares objective and the other based on Maximum Mean Discrepancy (MMD). The latter allows for generalisation to non-Gaussian distributed errors and non-linear covariate-response relationships. We provide bounds on the generalisation error using the MMD-loss and showcase the effectiveness of the proposed framework versus prior art in real-world mental health and dietary datasets that contain significant measurement errors.Comment: 43 pages, 4 figure

Marketing and Entrepreneurship

This project evaluated The Venture Forum\u27s (TVF) current operations and organization and provided recommendations for TVF to improve through a multi-tiered internal and external marketing mix. A survey with questions regarding TVF\u27s services offered, location, pricing, etc. was administered to TVF\u27s past and present customers. In addition, interviews and observations were conducted to gather more in-depth information on the internal and external factors affecting TVF. The team was able to recommend changes focusing on TVF\u27s internal organization and approach to external customers. These recommendations should revamp both the focus and motivation of the volunteer work force and provide said volunteers with an appropriate agenda that reflects the vision of TVF, moving forward

Stock Market Analysis IQP

Our team conducted a 15-week regression analysis in which we observed whether or not Google Search Volume (GSV) can serve as an explanatory variable for stock market returns, in particular, for the New York Stock Exchange (NYSE). The study attempts to provide quantitative evidence that the Efficient Market Hypothesis, which states that stock market returns cannot be explained with factual evidence, is false. The group researched the fundamentals behind stock market swings, as well as the cause for various movements in Google Trends. Through running Microsoft Excel regressions on these two sets of data, we can conclude that there is a positive correlation between search terms on GSV and the NYSE. That is, one has the potential to predict various stock index results based on GSV trends

The mitochondrial genome of the hexactinellid sponge Aphrocallistes vastus: Evidence for programmed translational frameshifting

<p>Abstract</p> <p>Background</p> <p>Mitochondrial genomes (mtDNA) of numerous sponges have been sequenced as part of an ongoing effort to resolve the class-level phylogeny of the Porifera, as well as to place the various lower metazoan groups on the animal-kingdom tree. Most recently, the partial mtDNA of two glass sponges, class Hexactinellida, were reported. While previous phylogenetic estimations based on these data remain uncertain due to insufficient taxon sampling and accelerated rates of evolution, the mtDNA molecules themselves reveal interesting traits that may be unique to hexactinellids. Here we determined the first complete mitochondrial genome of a hexactinellid sponge, <it>Aphrocallistes vastus</it>, and compared it to published poriferan mtDNAs to further describe characteristics specific to hexactinellid and other sponge mitochondrial genomes.</p> <p>Results</p> <p>The <it>A. vastus </it>mtDNA consisted of a 17,427 base pair circular molecule containing thirteen protein-coding genes, divergent large and small subunit ribosomal RNAs, and a reduced set of 18 tRNAs. The <it>A. vastus </it>mtDNA showed a typical hexactinellid nucleotide composition and shared a large synteny with the other sequenced glass sponge mtDNAs. It also contained an unidentified open reading frame and large intergenic space region. Two frameshifts, in the <it>cox3 </it>and <it>nad6 </it>genes, were not corrected by RNA editing, but rather possessed identical shift sites marked by the extremely rare tryptophan codon (UGG) followed by the common glycine codon (GGA) in the +1 frame.</p> <p>Conclusion</p> <p>Hexactinellid mtDNAs have shown similar trends in gene content, nucleotide composition, and codon usage, and have retained a large gene syntenty. Analysis of the mtDNA of <it>A. vastus </it>has provided evidence diagnostic for +1 programmed translational frameshifting, a phenomenon disparately reported throughout the animal kingdom, but present in the hexactinellid mtDNAs that have been sequenced to date.</p

Pollen Sterility—A Promising Approach to Gene Confinement and Breeding for Genetically Modified Bioenergy Crops

Advanced genetic and biotechnology tools will be required to realize the full potential of food and bioenergy crops. Given current regulatory concerns, many transgenic traits might never be deregulated for commercial release without a robust gene confinement strategy in place. The potential for transgene flow from genetically modified (GM) crops is widely known. Pollen-mediated transfer is a major component of gene flow in flowering plants and therefore a potential avenue for the escape of transgenes from GM crops. One approach for preventing and/or mitigating transgene flow is the production of trait linked pollen sterility. To evaluate the feasibility of generating pollen sterility lines for gene confinement and breeding purposes we tested the utility of a promoter (Zm13Pro) from a maize pollen-specific gene (Zm13) for driving expression of the reporter gene GUS and the cytotoxic gene barnase in transgenic rice (Oryza sativa ssp. Japonica cv. Nipponbare) as a monocot proxy for bioenergy grasses. This study demonstrates that the Zm13 promoter can drive pollen-specific expression in stably transformed rice and may be useful for gametophytic transgene confinement and breeding strategies by pollen sterility in food and bioenergy crops

The closely related homomeric and heterodimeric mannose-binding lectins from garlic are encoded by one-domain and two-domain lectin genes, respectively

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/65412/1/j.1432-1033.1992.tb16941.x.pd

\u3cem\u3eIn situ\u3c/em\u3e embryo rescue for generation of wide intra- and interspecific hybrids of \u3cem\u3ePanicum virgatum\u3c/em\u3e L.

Wide crosses have been used for decades as a method for transferring novel genetic material and traits in plant breeding. Historically, many products of wide crosses require tedious and inefficient surgical embryo rescue prior to embryo abortion to recover single plantlets. We have utilized transgenic switchgrass (Panicum virgatum L. cv Alamo) as a pollen donor in conjunction with antibiotic or herbicide selection for recovery of intra-and interspecific F1 crosses by using developing ovules from the female parent and selecting for embryogenic cultures derived from the in situ immature embryo. Using this approach, several intravarietial crosses were generated between transgenic Alamo and the switchgrass varieties Kanlow, Blackwell and Cave-in-Rock as well as an interspecific cross with Atlantic coastal panicgrass. This procedure selected F1 embryogenic callus produced from the developing embryo contained within isolated immature ovules. Several clonal plants were successfully regenerated from each cross. Southern blot, PCR, phenotypic analyses and genomic analysis confirmed F1 hybrids. Using genotyping-bysequencing shows the hybridization of the recovered plants by determining the ratio of transgressive markers to total compared markers between parents and their potential offspring. The ratio of transgressive markers to total compared markers was significantly lower between parents and their predicted offspring than between parents and offspring unrelated to them. This approach provides the possibility to move useful transgenes into varieties that are recalcitrant to direct transformation which can be optionally segregated thus useful to create new hybrids, as well as recovery of wide crosses that are either difficult or impossible using traditional techniques