A Preliminary Study of Image Analysis for Parasite Detection on Honey Bees

International Conference Image Analysis and Recognition (ICIAR 2018, Póvoa de Varzim, Portugal

Evidence for the evolutionary steps leading to mecA-mediated ß-lactam resistance in staphylococci

The epidemiologically most important mechanism of antibiotic resistance in Staphylococcus aureus is associated with mecA–an acquired gene encoding an extra penicillin-binding protein (PBP2a) with low affinity to virtually all β-lactams. The introduction of mecA into the S. aureus chromosome has led to the emergence of methicillin-resistant S. aureus (MRSA) pandemics, responsible for high rates of mortality worldwide. Nonetheless, little is known regarding the origin and evolution of mecA. Different mecA homologues have been identified in species belonging to the Staphylococcus sciuri group representing the most primitive staphylococci. In this study we aimed to identify evolutionary steps linking these mecA precursors to the β-lactam resistance gene mecA and the resistance phenotype. We sequenced genomes of 106 S. sciuri, S. vitulinus and S. fleurettii strains and determined their oxacillin susceptibility profiles. Single-nucleotide polymorphism (SNP) analysis of the core genome was performed to assess the genetic relatedness of the isolates. Phylogenetic analysis of the mecA gene homologues and promoters was achieved through nucleotide/amino acid sequence alignments and mutation rates were estimated using a Bayesian analysis. Furthermore, the predicted structure of mecA homologue-encoded PBPs of oxacillin-susceptible and -resistant strains were compared. We showed for the first time that oxacillin resistance in the S. sciuri group has emerged multiple times and by a variety of different mechanisms. Development of resistance occurred through several steps including structural diversification of the non-binding domain of native PBPs; changes in the promoters of mecA homologues; acquisition of SCCmec and adaptation of the bacterial genetic background. Moreover, our results suggest that it was exposure to β-lactams in human-created environments that has driven evolution of native PBPs towards a resistance determinant. The evolution of β-lactam resistance in staphylococci highlights the numerous resources available to bacteria to adapt to the selective pressure of antibiotics

Clinical Outcomes and Genetic Expression Profile in Human Liver Graft Dysfunction During Ischemia/Reperfusion Injury

Introduction. This study aims to compare the molecular gene expression during ischemia reperfusion injury. Several surgical times were considered: in the beginning of the harvesting (T0), at the end of the cold ischemia period (T1), and after reperfusion (T2) and compared with graft dysfunction after liver transplant (OLT). Methods. We studied 54 patients undergoing OLT. Clinical, laboratory data, and histologic data (Suzuki classification) as well as the Survival Outcomes Following Liver Transplantation (SOFT) score were used and compared with the molecular gene expression of the following genes: Interleukin (IL)-1b, IL-6, tumor necrosis factor-a, perforin, E-selectin (SELE), Fas-ligand, granzyme B, heme oxygenase-1, and nitric oxide synthetase. Results. Fifteen patients presented with graft dysfunction according to SOFT criteria. No relevant data were obtained by comparing the variables graft dysfunction and histologic variables. We observed a statistically significant relation between SELE at T0 (P ¼ .013) and IL-1b at T0 (P ¼ .028) and early graft dysfunction. Conclusions. We conclude that several genetically determined proinflammatory expressions may play a critical role in the development of graft dysfunction after OLT

Low-temperature properties of classical, geometrically frustrated antiferromagnets

We study the ground-state and low-energy properties of classical vector spin models with nearest-neighbour antiferromagnetic interactions on a class of geometrically frustrated lattices which includes the kagome and pyrochlore lattices. We explore the behaviour of these magnets that results from their large ground-state degeneracies, emphasising universal features and systematic differences between individual models. We investigate the circumstances under which thermal fluctuations select a particular subset of the ground states, and find that this happens only for the models with the smallest ground-state degeneracies. For the pyrochlore magnets, we give an explicit construction of all ground states, and show that they are not separated by internal energy barriers. We study the precessional spin dynamics of the Heisenberg pyrochlore antiferromagnet. There is no freezing transition or selection of preferred states. Instead, the relaxation time at low temperature, T, is of order hbar/(k_B T). We argue that this behaviour can also be expected in some other systems, including the Heisenberg model for the compound SrCr_8Ga_4O_{19}.Comment: to appear in Phys. Rev.

Emission lines from rotating proto-stellar jets with variable velocity profiles. I. Three-dimensional numerical simulation of the non-magnetic case

Using the Yguazu-a three-dimensional hydrodynamic code, we have computed a set of numerical simulations of heavy, supersonic, radiatively cooling jets including variabilities in both the ejection direction (precession) and the jet velocity (intermittence). In order to investigate the effects of jet rotation on the shape of the line profiles, we also introduce an initial toroidal rotation velocity profile, in agreement with some recent observational evidence found in jets from T Tauri stars which seems to support the presence of a rotation velocity pattern inside the jet beam, near the jet production region. Since the Yguazu-a code includes an atomic/ionic network, we are able to compute the emission coefficients for several emission lines, and we generate line profiles for the H, [O I]6300, [S II]6716 and [N II]6548 lines. Using initial parameters that are suitable for the DG Tau microjet, we show that the computed radial velocity shift for the medium-velocity component of the line profile as a function of distance from the jet axis is strikingly similar for rotating and non-rotating jet models. These findings lead us to put forward some caveats on the interpretation of the observed radial velocity distribution from a few outflows from young stellar objects, and we claim that these data should not be directly used as a doubtless confirmation of the magnetocentrifugal wind acceleration models.Comment: 15 pages, 8 figures. Accepted to publication in Astronomy and Astrophysic

Análise sensorial e microbiológica da carne ovina submetida a diferentes formas de conservação no pós-abate.

Foram utilizados seis cordeiros machos da raça Santa Inês, castrados, com idade média de quatro meses, que foram abatidos com peso entre 30-35 kg com o objetivo de avaliar o e feito de três tipos de acondicionamento da carne ovina (natural, resfriada e congelada) na qualidade sensorial e microbiológica da carne. Para a análise sensorial foi separado e preparado o músculo Longissimus dorsi para um painel de provadores que avaliaram a carne quanto ao aroma, sabor, maciez, suculência, mastigabilidade e aparência geral. O mesmo músculo foi utilizado para a análise microbiológica onde se determinaram coliformes totais e fecais, bolores e leveduras. A carne in natura foi mais macia e de melhor mastigabilidade (p<0,05) em relação à resfriada e congelada. Observou-se também nas carcaças não resfriadas maior incidência de bolores e leveduras e presença de coliformes fecais. Apesar da carne in natura ter apresentado maior maciez, o crescimento microbiano foi maior neste tipo de conservação pós abate, o que pode comprometer a saúde humana

Simultaneous Observation of Ionospheric Plasma Bubbles and Mesospheric Gravity Waves During the SpreadFEx Campaign

During the Spread F Experiment campaign, under NASA Living with a Star (LWS) program, carried out in the South American Magnetic Equator region from 22 September to 8 November 2005, two airglow CCD imagers, located at Cariri (7.4° S, 36.5° W, geomag. 11° S) and near Brasilia (14.8° S, 47.6° W, geomag. 10° S) were operated simultaneously and measured the equatorial ionospheric bubbles and their time evolution by monitoring the airglow OI 6300 intensity depletions. Simultaneous observation of the mesospheric OH wave structures made it possible to investigate the relationship between the bubble formation in the ionosphere and the gravity wave activity at around 90 km. On the evening of 30 September 2005, comb-like OI 6300 depletions with a distance of ~130 km between the adjacent ones were observed. During the same period, a mesospheric gravity wave with a horizontal wavelength of ~130 km was observed. From the 17 nights of observation during the campaign period, there was a good correlation between the OI 6300 depletion distances and the gravity wave horizontal wavelengths in the mesosphere with a statistically significant level, suggesting a direct contribution of the mesospheric gravity wave to plasma bubble seeding in the equatorial ionosphere

Overview and Summary of the Spread F Experiment (SpreadFex)

We provide here an overview of, and a summary of results arising from, an extensive experimental campaign (the Spread F Experiment, or SpreadFEx) performed from September to November 2005, with primary measurements in Brazil. The motivation was to define the potential role of neutral atmosphere dynamics, specifically gravity wave motions propagating upward from the lower atmosphere, in seeding Rayleigh-Taylor instability (RTI) and plasma bubbles extending to higher altitudes. Campaign measurements focused on the Brazilian sector and included ground-based optical, radar, digisonde, and GPS measurements at a number of fixed and temporary sites. Related data on convection and plasma bubble structures were also collected by GOES 12, and the GUVI instrument aboard the TIMED satellite

The spread-F Experiment (SpreadFEx): Program overview and first results

We performed an extensive experimental campaign (the spread F Experiment, or SpreadFEx) from September to November 2005 to attempt to define the role of neutral atmosphere dynamics, specifically wave motions propagating upward from the lower atmosphere, in seeding equatorial spread F and plasma bubbles extending to higher altitudes. Campaign measurements focused on the Brazilian sector and included ground-based optical, radar, digisonde, and GPS measurements at a number of fixed and temporary sites. Related data on convection and plasma bubble structures were also collected by GOES 12 and the GUVI instrument aboard the TIMED satellite. Initial results of our analyses of SpreadFEx and related data indicate 1) extensive gravity wave (GW) activity apparently linked to deep convection predominantly to the west of our measurement sites, 2) the presence of small-scale GWactivity confined to lower altitudes, 3) larger-scaleGWactivity apparently penetrating to much higher altitudes suggested by electron density and TEC fluctuations in the E and F regions, 4) substantial GW amplitudes implied by digisonde electron densities, and 5) apparent direct links of these perturbations in the lower F region to spread F and plasma bubbles extending to much higher altitudes. Related efforts with correlative data are defining 6) the occurrence and locations of deep convection, 7) the spatial and temporal evolutions of plasma bubbles, the 8) 2D (height-resolved) structures of plasma bubbles, and 9) the expected propagation of GWs and tides from the lower atmosphere into the thermosphere and ionosphere