Ranking relations using analogies in biological and information networks

Analogical reasoning depends fundamentally on the ability to learn and generalize about relations between objects. We develop an approach to relational learning which, given a set of pairs of objects $\mathbf{S}=\{A^{(1)}:B^{(1)},A^{(2)}:B^{(2)},\ldots,A^{(N)}:B ^{(N)}\}$, measures how well other pairs A:B fit in with the set $\mathbf{S}$. Our work addresses the following question: is the relation between objects A and B analogous to those relations found in $\mathbf{S}$? Such questions are particularly relevant in information retrieval, where an investigator might want to search for analogous pairs of objects that match the query set of interest. There are many ways in which objects can be related, making the task of measuring analogies very challenging. Our approach combines a similarity measure on function spaces with Bayesian analysis to produce a ranking. It requires data containing features of the objects of interest and a link matrix specifying which relationships exist; no further attributes of such relationships are necessary. We illustrate the potential of our method on text analysis and information networks. An application on discovering functional interactions between pairs of proteins is discussed in detail, where we show that our approach can work in practice even if a small set of protein pairs is provided.Comment: Published in at http://dx.doi.org/10.1214/09-AOAS321 the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org

SLIC Based Digital Image Enlargement

Low resolution image enhancement is a classical computer vision problem. Selecting the best method to reconstruct an image to a higher resolution with the limited data available in the low-resolution image is quite a challenge. A major drawback from the existing enlargement techniques is the introduction of color bleeding while interpolating pixels over the edges that separate distinct colors in an image. The color bleeding causes to accentuate the edges with new colors as a result of blending multiple colors over adjacent regions. This paper proposes a novel approach to mitigate the color bleeding by segmenting the homogeneous color regions of the image using Simple Linear Iterative Clustering (SLIC) and applying a higher order interpolation technique separately on the isolated segments. The interpolation at the boundaries of each of the isolated segments is handled by using a morphological operation. The approach is evaluated by comparing against several frequently used image enlargement methods such as bilinear and bicubic interpolation by means of Peak Signal-to-Noise-Ratio (PSNR) value. The results obtained exhibit that the proposed method outperforms the baseline methods by means of PSNR and also mitigates the color bleeding at the edges which improves the overall appearance.Comment: 6 page

Meson decay in the Fock-Tani Formalism

The Fock-Tani formalism is a first principle method to obtain effective interactions from microscopic Hamiltonians. Usually this formalism was applied to scattering, here we introduced it to calculate partial decay widths for mesons.Comment: Presented at HADRON05 XI. "International Conference on Hadron Spectroscopy" Rio de Janeiro, Brazil, August 21 to 26, 200

Oxygen clamps in gold nanowires

We investigate how the insertion of an oxygen atom in an atomically thin gold nanowire can affect its rupture. We find, using ab initio total energy density functional theory calculations, that O atoms when inserted in gold nanowires form not only stable but also very strong bonds, in such a way that they can extract atoms from a stable tip, serving in this way as a clamp that could be used to pull a string of gold atoms.Comment: 4 pages; 4 figure

Glueball-glueball scattering in a constituent gluon model

In this work we use a mapping technique to derive in the context of a constituent gluon model an effective Hamiltonian that involves explicit gluon degrees of freedom. We study glueballs with two gluons using the Fock-Tani formalism. In the present work we consider two possibilities for $0^{++}$: (i) as a pure $s\bar{s}$ and calculate, in the context of a quark interchange picture, the cross-section; (ii) as a glueball where a new calculation for this cross-section is made, in the context of the constituent gluon model, with gluon interchange.Comment: Proceedings of the International Workshop IX Hadron Physics and VII Relativistic Aspects of Nuclear Physics (HADRON-RANP 2004