10,597 research outputs found
Conversion of nitric oxide in an engine exhaust by selective catalytic reduction with a urea spray under steady-state and transient engine-load conditions
Line-Focus Acoustic Mcroscopy Measurements of Thin-Film Elastic Constants
Thin film materials are widely used as hard, protective coatings for softer surfaces. It is known that fracture strength and hardness are related to the elastic and plastic properties [1]. The elastic constants of the film deposited on a substrate are, however, difficult to measure. By a technique which was recently discussed [2] the elastic constants of amorphous (isotropic) films and single-crystal (anisotropic) films can be obtained by measuring the velocities of surface acoustic waves (SAWs) propagating over a thin-film/ substrate specimen by the use of a line-focus acoustic microscope
Finite Temperature Aging Holography
We construct the gravity background which describes the dual field theory
with aging invariance. We choose the decay modes of the bulk scalar field in
the internal spectator direction to obtain the dissipative behavior of the
boundary correlation functions of the dual scalar fields. In particular, the
two-time correlation function at zero temperature has the characteristic
features of the aging system: power law decay, broken time translation and
dynamical scaling. We also construct the black hole backgrounds with asymptotic
aging invariance. We extensively study characteristic behavior of the finite
temperature two-point correlation function via analytic and numerical methods.Comment: 38 pages and 5 figures, expanded discussions on correlator, one
mistake is fixed, modified discussion on shear viscosity, to appear in JHE
Aging Logarithmic Conformal Field Theory : a holographic view
We consider logarithmic extensions of the correlation and response functions
of scalar operators for the systems with aging as well as Schr\"odinger
symmetry. Aging is known to be the simplest nonequilibrium phenomena, and its
physical significances can be understood by the two-time correlation and
response functions. Their logarithmic part is completely fixed by the bulk
geometry in terms of the conformal weight of the dual operator and the dual
particle number.
Motivated by recent experimental realizations of Kardar-Parisi-Zhang
universality class in growth phenomena and its subsequent theoretical extension
to aging, we investigate our two-time correlation functions out of equilibrium,
which show several qualitatively different behaviors depending on the
parameters in our theory. They exhibit either growing or aging, i.e. power-law
decaying, behaviors for the entire range of our scaling time. Surprisingly, for
some parameter ranges, they exhibit growing at early times as well as aging at
later times.Comment: 1+26 pages, 15 figure
Chromosome segregation errors generate a diverse spectrum of simple and complex genomic rearrangements
Cancer genomes are frequently characterized by numerical and structural chromosomal abnormalities. Here we integrated a centromere-specific inactivation approach with selection for a conditionally essential gene, a strategy termed CEN-SELECT, to systematically interrogate the structural landscape of mis-segregated chromosomes. We show that single-chromosome mis-segregation into a micronucleus can directly trigger a broad spectrum of genomic rearrangement types. Cytogenetic profiling revealed that mis-segregated chromosomes exhibit 120-fold-higher susceptibility to developing seven major categories of structural aberrations, including translocations, insertions, deletions, and complex reassembly through chromothripsis coupled to classical non-homologous end joining. Whole-genome sequencing of clonally propagated rearrangements identified random patterns of clustered breakpoints with copy-number alterations resulting in interspersed gene deletions and extrachromosomal DNA amplification events. We conclude that individual chromosome segregation errors during mitotic cell division are sufficient to drive extensive structural variations that recapitulate genomic features commonly associated with human disease
Centralized Modularity of N-Linked Glycosylation Pathways in Mammalian Cells
Glycosylation is a highly complex process to produce a diverse repertoire of
cellular glycans that are attached to proteins and lipids. Glycans are involved
in fundamental biological processes, including protein folding and clearance,
cell proliferation and apoptosis, development, immune responses, and
pathogenesis. One of the major types of glycans, N-linked glycans, is formed by
sequential attachments of monosaccharides to proteins by a limited number of
enzymes. Many of these enzymes can accept multiple N-linked glycans as
substrates, thereby generating a large number of glycan intermediates and their
intermingled pathways. Motivated by the quantitative methods developed in
complex network research, we investigated the large-scale organization of such
N-linked glycosylation pathways in mammalian cells. The N-linked glycosylation
pathways are extremely modular, and are composed of cohesive topological
modules that directly branch from a common upstream pathway of glycan
synthesis. This unique structural property allows the glycan production between
modules to be controlled by the upstream region. Although the enzymes act on
multiple glycan substrates, indicating cross-talk between modules, the impact
of the cross-talk on the module-specific enhancement of glycan synthesis may be
confined within a moderate range by transcription-level control. The findings
of the present study provide experimentally-testable predictions for
glycosylation processes, and may be applicable to therapeutic glycoprotein
engineering
Conditioned stochastic particle systems and integrable quantum spin systems
We consider from a microscopic perspective large deviation properties of
several stochastic interacting particle systems, using their mapping to
integrable quantum spin systems. A brief review of recent work is given and
several new results are presented: (i) For the general disordered symmectric
exclusion process (SEP) on some finite lattice conditioned on no jumps into
some absorbing sublattice and with initial Bernoulli product measure with
density we prove that the probability of no absorption event
up to microscopic time can be expressed in terms of the generating function
for the particle number of a SEP with particle injection and empty initial
lattice. Specifically, for the symmetric simple exclusion process on conditioned on no jumps into the origin we obtain the explicit first and
second order expansion in of and also to first order in
the optimal microscopic density profile under this conditioning. For the
disordered ASEP on the finite torus conditioned on a very large current we show
that the effective dynamics that optimally realizes this rare event does not
depend on the disorder, except for the time scale. For annihilating and
coalescing random walkers we obtain the generating function of the number of
annihilated particles up to time , which turns out to exhibit some universal
features.Comment: 25 page
Towards Alignment Independent Quantitative Assessment of Homology Detection
Identification of homologous proteins provides a basis for protein annotation. Sequence alignment tools reliably identify homologs sharing high sequence similarity. However, identification of homologs that share low sequence similarity remains a challenge. Lowering the cutoff value could enable the identification of diverged homologs, but also introduces numerous false hits. Methods are being continuously developed to minimize this problem. Estimation of the fraction of homologs in a set of protein alignments can help in the assessment and development of such methods, and provides the users with intuitive quantitative assessment of protein alignment results. Herein, we present a computational approach that estimates the amount of homologs in a set of protein pairs. The method requires a prevalent and detectable protein feature that is conserved between homologs. By analyzing the feature prevalence in a set of pairwise protein alignments, the method can estimate the number of homolog pairs in the set independently of the alignments' quality. Using the HomoloGene database as a standard of truth, we implemented this approach in a proteome-wide analysis. The results revealed that this approach, which is independent of the alignments themselves, works well for estimating the number of homologous proteins in a wide range of homology values. In summary, the presented method can accompany homology searches and method development, provides validation to search results, and allows tuning of tools and methods
Associations of sitting accumulation patterns with cardio-metabolic risk biomarkers in Australian adults
Backgroun
Positive and negative well-being and objectively measured sedentary behaviour in older adults: evidence from three cohorts
Background:
Sedentary behaviour is related to poorer health independently of time spent in moderate to vigorous physical activity. The aim of this study was to investigate whether wellbeing or symptoms of anxiety or depression predict sedentary behaviour in older adults.
Method:
Participants were drawn from the Lothian Birth Cohort 1936 (LBC1936) (n = 271), and the West of Scotland Twenty-07 1950s (n = 309) and 1930s (n = 118) cohorts. Sedentary outcomes, sedentary time, and number of sit-to-stand transitions, were measured with a three-dimensional accelerometer (activPAL activity monitor) worn for 7 days. In the Twenty-07 cohorts, symptoms of anxiety and depression were assessed in 2008 and sedentary outcomes were assessed ~ 8 years later in 2015 and 2016. In the LBC1936 cohort, wellbeing and symptoms of anxiety and depression were assessed concurrently with sedentary behaviour in 2015 and 2016. We tested for an association between wellbeing, anxiety or depression and the sedentary outcomes using multivariate regression analysis.
Results:
We observed no association between wellbeing or symptoms of anxiety and the sedentary outcomes. Symptoms of depression were positively associated with sedentary time in the LBC1936 and Twenty-07 1950s cohort, and negatively associated with number of sit-to-stand transitions in the LBC1936. Meta-analytic estimates of the association between depressive symptoms and sedentary time or number of sit-to-stand transitions, adjusted for age, sex, BMI, long-standing illness, and education, were β = 0.11 (95% CI = 0.03, 0.18) and β = − 0.11 (95% CI = − 0.19, −0.03) respectively.
Conclusion:
Our findings indicate that depressive symptoms are positively associated with sedentary behavior. Future studies should investigate the causal direction of this association
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