A New Frontier for Fat: Dietary Palmitic Acid induces innate immune memory

Dietary saturated fats have recently been appreciated for their ability to modify innate immune cell function, including monocytes, macrophages, and neutrophils. Many dietary saturated fatty acids (SFAs) embark on a unique pathway through the lymphatics following digestion, and this makes them intriguing candidates for inflammatory regulation during homeostasis and disease. Specifically, palmitic acid (PA) and diets enriched in PA have recently been implicated in driving innate immune memory in mice. PA has been shown to induce long-lasting hyper-inflammatory capacity against secondary microbial stimuli in vitro and in vivo, and PA-enriched diets alter the developmental trajectory of stem cell progenitors in the bone marrow. Perhaps the most relevant finding is the ability of exogenous PA to enhance clearance of fungal and bacterial burdens in mice; however, the same PA treatment enhances endotoxemia severity and mortality. Westernized countries are becoming increasingly dependent on SFAenriched diets, and a deeper understanding of SFA regulation of innate immune memory is imperative in this pandemic era

A new European plant-specific emission inventory of biogenic volatile organic compounds for use in atmospheric transport models

We present a new European plant-specific emission inventory for isoprene, monoterpenes, sesquiterpenes and oxygenated VOC (OVOC), on a spatial resolution of 0.089×0.089 degrees, for implementation in atmospheric transport models. The inventory incorporates more accurate data on foliar biomass densities from several litterfall databases that became available in the last years for the main tree species in Europe. A bioclimatic correction factor was introduced to correct the foliar biomass densities of trees and crops for the different plant growth conditions that can be found in Pan-Europe. Long-term seasonal variability of agriculture and forest emissions was taken into account by implementing a new growing season concept. The 2004–2005 averaged annual total biogenic volatile organic compound (BVOC) emissions for the Pan-European domain are estimated to be about 12 Tg with a large contribution from the OVOC class of about 4.5 Tg and from monoterpenes of about 4 Tg. Annual isoprene emissions are found to be about 3.5 Tg, insensitive to the chosen emission algorithm. Emissions of OVOC were found to originate to a large extent from agriculture. Further experiments on crop emissions should be carried out to check the validity of the applied standard emission factors. The new inventory aims at a fully transparent and verifiable aggregation of detailed land use information and at the inclusion of plant-specific emission data. Though plant-specific land use data is available with relatively high accuracy, a lack of experimental biomass densities and emission data on terpenes, sesquiterpenes and oxygenated VOC, in particular for agricultural plants, currently limits the setup of a highly accurate plant-specific emission inventory

Impact of 40 years poplar cultivation on soil carbon stocks and greenhouse gas fluxes

International audienceWithin the JRC Kyoto Experiment in the Regional Park and UN-Biosphere Reserve "Parco Ticino" (North-Italy, near Pavia), the soil carbon stocks and fluxes of CO2, N2O, and CH4 were measured in a poplar plantation in comparison with a natural mesohygrophilous deciduous forest nearby, which represents the pristine land cover of the area. Soil fluxes were measured using the static and dynamic closed chamber techniques for CH4 N2O, and CO2, respectively. We made further a pedological study to relate the spatial variability found with soil parameters. Annual emission fluxes of N2O and CO2 and deposition fluxes of CH4 were calculated for the year 2003 for the poplar plantation and compared to those measured at the natural forest site. N2O emissions at the poplar plantation were 0.15$plusmn;0.1 g N2O m-2 y-1 and the difference to the emissions at the natural forest of 0.07±0.06 g N2O m-2 y-1 are partly due to a period of high emissions after the flooding of the site at the end of 2002. CH4 consumption at the natural forest was twice as large as at the poplar plantation. In comparison to the relict forest, carbon stocks in the soil under the poplar plantation were depleted by 61% of surface (10 cm) carbon and by 25% down the profile under tillage (45 cm). Soil respiration rates were not significant different at both sites with 1608±1053 and 2200±791 g CO2 m-2 y-1 at the poplar plantation and natural forest, respectively, indicating that soil organic carbon is much more stable in the natural forest. In terms of the greenhouse gas budget, the non-CO2 gases contributed minor to the overall soil balance with only 0.9% (N2O) and -0.3% (CH4 of CO2-eq emissions in the natural forest, and 2.7% (N2O) and -0.2% of CO2-eq. emissions in the poplar plantation. The very high spatial variability of soil fluxes within the two sites was related to the morphology of the floodplain area, which was formed by the historic course of the Ticino river and led to a small-scale (tenth of meters) variability in soil texture and to small-scale differences in elevation. Differences of site conditions are reflected by differences of inundation patterns, ecosystem productivity, CO2 and N2O emission rates, and soil contents of carbon and nitrogen. Additional variability was observed during a flooding event and after fertilisation at the poplar site. Despite of this variability, the two sites are comparable as both originate from alluvial deposits. The study shows that changes in soil carbon stocks and related fertility are the most visible phenomena after 40 years of land use change from a pristine forest to a fast growing poplar plantation. Therefore, the conservation and careful management of existing carbon stocks deserves highest priority in the context of the Kyoto Protocol

Computational Analysis of Plasma Lipidomics from Mice Fed Standard Chow and Ketogenic Diet

Dietary saturated fatty acids (SFAs) are upregulated in the blood circulation following digestion. A variety of circulating lipid species have been implicated in metabolic and inflammatory diseases; however, due to the extreme variability in serum or plasma lipid concentrations found in human studies, established reference ranges are still lacking, in addition to lipid specificity and diagnostic biomarkers. Mass spectrometry is widely used for identification of lipid species in the plasma, and there are many differences in sample extraction methods within the literature. We used ultra-high performance liquid chromatography (UPLC) coupled to a high-resolution hybrid triple quadrupole-time-of-flight (QToF) mass spectrometry (MS) to compare relative peak abundance of specific lipid species within the following lipid classes: free fatty acids (FFAs), triglycerides (TAGs), phosphatidylcholines (PCs), and sphingolipids (SGs), in the plasma of mice fed a standard chow (SC; low in SFAs) or ketogenic diet (KD; high in SFAs) for two weeks. In this protocol, we used Principal Component Analysis (PCA) and R to visualize how individual mice clustered together according to their diet, and we found that KD-fed mice displayed unique blood profiles for many lipid species identified within each lipid class compared to SC-fed mice. We conclude that two weeks of KD feeding is sufficient to significantly alter circulating lipids, with PCs being the most altered lipid class, followed by SGs, TAGs, and FFAs, including palmitic acid (PA) and PA-saturated lipids. This protocol is needed to advance knowledge on the impact that SFA-enriched diets have on concentrations of specific lipids in the blood that are known to be associated with metabolic and inflammatory diseases

Developmental Basis of Pronephric Defects in Xenopus Body Plan Phenotypes

AbstractWe have used monoclonal antibodies that recognize the pronephric tubules or pronephric duct to explore the induction of the embryonic kidney in developing Xenopus embryos. Morphogenesis of the pronephros was examined in UV-ventralized and lithium-dorsalized embryos. We find that the pronephric tubules are present in all but the strongest UV-induced phenotypes, but absent from relatively moderate lithium phenotypes. Interestingly the pronephric duct, which develops from the ventroposterior portion of the pronephric anlage, is missing from more of the mild UV phenotypes than are pronephric tubules. The loss of the capacity to form pronephroi in UV-ventralized embryos is caused by the loss of tissues capable of inducing the pronephric mesoderm, as marginal zone explants from ventralized embryos are still competent to respond to pronephric-inductive signals. Explant recombination experiments indicate that the tissue responsible for both the loss of pronephroi in UV-ventralized embryos and the induction of pronephroi during normal development is the anterior somites. The absence of pronephroi in relatively mild lithium phenotypes has a developmental basis different from that of the UV phenotype, as explants from lithium-treated embryos are effective inducers of pronephroi in recombinants with competent mesoderm, even though they themselves do not form pronephroi in isolation. Together these data indicate that dorsal tissues, especially the anterior somites, are responsible for the establishment of the intermediate mesoderm and the induction of the embryonic kidneys and that even mild dorsalization destroys the capacity to form cells competent to receive this signal

Urban agriculture: a global analysis of the space constraint to meet urban vegetable demand

Urban agriculture (UA) has been drawing a lot of attention recently for several reasons: the majority of the world population has shifted from living in rural to urban areas; the environmental impact of agriculture is a matter of rising concern; and food insecurity, especially the accessibility of food, remains a major challenge. UA has often been proposed as a solution to some of these issues, for example by producing food in places where population density is highest, reducing transportation costs, connecting people directly to food systems and using urban areas efficiently. However, to date no study has examined how much food could actually be produced in urban areas at the global scale. Here we use a simple approach, based on different global-scale datasets, to assess to what extent UA is constrained by the existing amount of urban space. Our results suggest that UA would require roughly one third of the total global urban area to meet the global vegetable consumption of urban dwellers. This estimate does not consider how much urban area may actually be suitable and available for UA, which likely varies substantially around the world and according to the type of UA performed. Further, this global average value masks variations of more than two orders of magnitude among individual countries. The variations in the space required across countries derive mostly from variations in urban population density, and much less from variations in yields or per capita consumption. Overall, the space required is regrettably the highest where UA is most needed, i.e., in more food insecure countries. We also show that smaller urban clusters (i.e., <100 km2 each) together represent about two thirds of the global urban extent; thus UA discourse and policies should not focus on large cities exclusively, but should also target smaller urban areas that offer the greatest potential in terms of physical space

Emergence of communities on a coevolutive model of wealth interchange

We present a model in which we investigate the structure and evolution of a random network that connects agents capable of exchanging wealth. Economic interactions between neighbors can occur only if the difference between their wealth is less than a threshold value that defines the width of the economic classes. If the interchange of wealth cannot be done, agents are reconnected with another randomly selected agent, allowing the network to evolve in time. On each interaction there is a probability of favoring the poorer agent, simulating the action of the government. We measure the Gini index, having real world values attached to reality. Besides the network structure showed a very close connection with the economic dynamic of the system.Comment: 5 pages, 7 figure