Data Mining the SDSS SkyServer Database

An earlier paper (Szalay et. al. "Designing and Mining MultiTerabyte Astronomy Archives: The Sloan Digital Sky Survey," ACM SIGMOD 2000) described the Sloan Digital Sky Survey's (SDSS) data management needs by defining twenty database queries and twelve data visualization tasks that a good data management system should support. We built a database and interfaces to support both the query load and also a website for ad-hoc access. This paper reports on the database design, describes the data loading pipeline, and reports on the query implementation and performance. The queries typically translated to a single SQL statement. Most queries run in less than 20 seconds, allowing scientists to interactively explore the database. This paper is an in-depth tour of those queries. Readers should first have studied the companion overview paper Szalay et. al. "The SDSS SkyServer, Public Access to the Sloan Digital Sky Server Data" ACM SIGMOND 2002.Comment: 40 pages, Original source is at http://research.microsoft.com/~gray/Papers/MSR_TR_O2_01_20_queries.do

Longitudinal patterns in an Arkansas River Valley stream: an Application of the River Continuum Concept

The River Continuum Concept (RCC) provides the framework for studying how lotic ecosystems vary from headwater streams to large rivers. The RCC was developed in streams in eastern deciduous forests of North America, but watershed characteristics and land uses differ across ecoregions, presenting unique opportunities to study how predictions of the RCC may differ across regions. Additionally, RCC predictions may vary due to the influence of fishes, but few studies have used fish taxa as a metric for evaluating predictions of the RCC. Our goal was to determine if RCC predictions for stream orders 1 through 5 were supported by primary producer, macroinvertebrate, and fish communities in Cadron Creek of the Arkansas River Valley. We sampled chlorophyll a, macroinvertebrates, and fishes at five stream reaches across a gradient of watershed size. Contrary to RCC predictions, chlorophyll a did not increase in concentration with catchment size. As the RCC predicts, fish and macroinvertebrate diversity increased with catchment size. Shredding and collecting macroinvertebrate taxa supported RCC predictions, respectively decreasing and increasing in composition as catchment area increased. Herbivorous and predaceous fish did not follow RCC predictions; however, surface-water column feeding fish were abundant at all sites as predicted. We hypothesize some predictions of the RCC were not supported in headwater reaches of this system due to regional differences in watershed characteristics and altered resource availability due to land use surrounding sampling sites

Algorithm To Architecture Mapping Model (ATAMM) multicomputer operating system functional specification

A functional description of the ATAMM Multicomputer Operating System is presented. ATAMM (Algorithm to Architecture Mapping Model) is a marked graph model which describes the implementation of large grained, decomposed algorithms on data flow architectures. AMOS, the ATAMM Multicomputer Operating System, is an operating system which implements the ATAMM rules. A first generation version of AMOS which was developed for the Advanced Development Module (ADM) is described. A second generation version of AMOS being developed for the Generic VHSIC Spaceborne Computer (GVSC) is also presented

Online Scientific Data Curation, Publication, and Archiving

Science projects are data publishers. The scale and complexity of current and future science data changes the nature of the publication process. Publication is becoming a major project component. At a minimum, a project must preserve the ephemeral data it gathers. Derived data can be reconstructed from metadata, but metadata is ephemeral. Longer term, a project should expect some archive to preserve the data. We observe that pub-lished scientific data needs to be available forever ? this gives rise to the data pyramid of versions and to data inflation where the derived data volumes explode. As an example, this article describes the Sloan Digital Sky Survey (SDSS) strategies for data publication, data access, curation, and preservation.Comment: original at http://research.microsoft.com/scripts/pubs/view.asp?TR_ID=MSR-TR-2002-7

Automatic camera tracking for remote manipulators

The problem of automatic camera tracking of mobile objects is addressed with specific reference to remote manipulators and using either fixed or mobile cameras. The technique uses a kinematic approach employing 4 x 4 coordinate transformation matrices to solve for the needed camera PAN and TILT angles. No vision feedback systems are used, as the required input data are obtained entirely from position sensors from the manipulator and the camera-positioning system. All hardware requirements are generally satisfied by currently available remote manipulator systems with a supervisory computer. The system discussed here implements linear plus on/off (bang-bang) closed-loop control with a +-2-deg deadband. The deadband area is desirable to avoid operator seasickness caused by continuous camera movement. Programming considerations for camera control, including operator interface options, are discussed. The example problem presented is based on an actual implementation using a PDP 11/34 computer, a TeleOperator Systems SM-229 manipulator, and an Oak Ridge National Laboratory (ORNL) camera-positioning system. 3 references, 6 figures, 2 tables

Gene Expressio Array Exploration Using K-Formal Concept Analysis

Proceeding of: 9th International Conference, ICFCA 2011, Nicosia, Cyprus, May 2-6, 2011.DNA micro-arrays are a mechanism for eliciting gene expression values, the concentration of the transcription products of a set of genes, under different chemical conditions. The phenomena of interest—up-regulation, down-regulation and co-regulation—are hypothesized to stem from the functional relationships among transcription products. In [1,2,3] a generalisation of Formal Concept Analysis was developed with data mining applications in mind, K-Formal Concept Analysis, where incidences take values in certain kinds of semirings, instead of the usual Boolean carrier set. In this paper, we use (Rmin+)- and (Rmax+) to analyse gene expression data for Arabidopsis thaliana. We introduce the mechanism to render the data in the appropriate algebra and profit by the wealth of different Galois Connections available in Generalized Formal Concept Analysis to carry different analysis for up- and down-regulated genes.Spanish Government-Comision Interministerial de Ciencia y Tecnología projects 2008-06382/TEC and 2008-02473/TEC and the regional projects S-505/TIC/0223 (DGUI-CM) and CCG08-UC3M/TIC- 4457 (Comunidad Aut onoma de Madrid - UC3M)

A variable geometry truss manipulator for positioning large payloads

A major thrust within the Department of Energy`s (DOE) Decontamination and Dismantling (D&D) Robotics program is the development of a Selective Equipment Removal System (SERS). SERS will consist of a mobile vehicle, a Dual-Arm Work Module (DAWM), and a deployment manipulator capable of extending the DAWM up to 6.096m (20) from the vehicle. The DAWM, built by RedZone Robotics, includes two Schilling Titan II manipulators, a unique five degree-of-freedom (DOF) module for positioning/orienting the two Schilling arms, and a massive steel backplane to maintain structural rigidity. Together with its payload, the DAWM weighs about 975 kg (2150 pounds). In order to accurately position the DAWM, the Pacific Northwest Laboratory (PNL) together with the National Aeronautics and Space Administration`s Langley Research Center (NASA LARC) are developing a deployment manipulator, which includes two double-octahedral Variable Geometry Truss (VGT) modules connected with a static truss section. The entire SERS system (Figure 1) will include the mobile vehicle, a 2-DOF base actuation system (waist rotate and pitch) with an output link approximately 2.134m (7) in length, the VGT system and the DAWM. The VGT system (Figure 2) consists of a 1.067m (42) diameter ({approximately}1.346m (53) long) base VGT, which mounts to the end of the output link of the base actuation system, a 1.524m (60) long static truss section which tapers from 1.067m (42) diameter at its base to 0.8128m (32) diameter at the end, and a 0.8128m (32) diameter ({approximately}1.0922m (43) long) tip VGT to which the DAWM is mounted. The stiffness of the VGT system is such that with the base VGT mounted to a rigid base and the VGT system oriented horizontally (worst case), the static deflection of the DAWM together with full payload will be less than 0.0254m

Identification of A-colored Stars and Structure in the Halo of the Milky Way from SDSS Commissioning Data

A sample of 4208 objects with magnitude 15 < g* < 22 and colors of main sequence A stars has been selected from 370 square degrees of Sloan Digital Sky Survey (SDSS) commissioning observations. The data is from two long, narrow stripes, each with an opening angle of greater than 60 deg, at Galactic latitudes 36 < abs(b) < 63 on the celestial equator. An examination of the sample's distribution shows that these stars trace considerable substructure in the halo. Large overdensities of A-colored stars in the North at (l,b,R) = (350, 50, 46 kpc) and in the South at (157, -58, 33 kpc) and extending over tens of degrees are present in the halo of the Milky Way. Using photometry to separate the stars by surface gravity, both structures are shown to contain a sequence of low surface gravity stars consistent with identification as a blue horizontal branch (BHB). Both structures also contain a population of high surface gravity stars two magnitudes fainter than the BHB stars, consistent with their identification as blue stragglers (BSs). From the numbers of detected BHB stars, lower limits to the implied mass of the structures are 6x10^6 M_sun and 2x10^6 M_sun. The fact that two such large clumps have been detected in a survey of only 1% of the sky indicates that such structures are not uncommon in the halo. Simple spheroidal parameters are fit to a complete sample of the remaining unclumped BHB stars and yield (at r < 40 kpc) a fit to a halo distribution with flattening (c/a = 0.65+/-0.2) and a density falloff exponent of alpha = -3.2+/-0.3.Comment: AASTeX v5_0, 26 pages, 1 table, 20 figures, ApJ accepte

New Pulsating DB White Dwarf Stars from the Sloan Digital Sky Survey

We are searching for new He atmosphere white dwarf pulsators (DBVs) based on the newly found white dwarf stars from the spectra obtained by the Sloan Digital Sky Survey. DBVs pulsate at hotter temperature ranges than their better known cousins, the H atmosphere white dwarf pulsators (DAVs or ZZ Ceti stars). Since the evolution of white dwarf stars is characterized by cooling, asteroseismological studies of DBVs give us opportunities to study white dwarf structure at a different evolutionary stage than the DAVs. The hottest DBVs are thought to have neutrino luminosities exceeding their photon luminosities (Winget et al. 2004), a quantity measurable through asteroseismology. Therefore, they can also be used to study neutrino physics in the stellar interior. So far we have discovered nine new DBVs, doubling the number of previously known DBVs. Here we report the new pulsators' lightcurves and power spectra.Comment: 15 pages, 2 figures, 3 tables, ApJ accepte