Rho-GTPases in Embryonic Stem Cells

Michael S. Samuel and Michael F. Olso

Hall of Mirrors Scattering from an Impurity in a Quantum Wire

This paper develops a scattering theory to examine how point impurities affect transport through quantum wires. While some of our new results apply specifically to hard-walled wires, others--for example, an effective optical theorem for two-dimensional waveguides--are more general. We apply the method of images to the hard-walled guide, explicitly showing how scattering from an impurity affects the wire's conductance. We express the effective cross section of a confined scatterer entirely in terms of the empty waveguide's Green's function, suggesting a way in which to use semiclassical methods to understand transport properties of smooth wires. In addition to predicting some new phenomena, our approach provides a simple physical picture for previously observed effects such as conductance dips and confinement-induced resonances.Comment: 19 pages, 8 figures. Accepted for publication in Physical Review B. Minor additions to text, added reference

Tissue-selective expression of a conditionally-active ROCK2-estrogen receptor fusion protein

The serine/threonine kinases ROCK1 and ROCK2 are central mediators of actomyosin contractile force generation that act downstream of the RhoA small GTP-binding protein. As a result, they have key roles in regulating cell morphology and proliferation, and have been implicated in numerous pathological conditions and diseases including hypertension and cancer. Here we describe the generation of a gene-targeted mouse line that enables CRE-inducible expression of a conditionally-active fusion between the ROCK2 kinase domain and the hormone-binding domain of a mutated estrogen receptor (ROCK2:ER). This two-stage system of regulation allows for tissue-selective expression of the ROCK2:ER fusion protein, which then requires administration of estrogen analogues such as tamoxifen or 4-hydroxytamoxifen to elicit kinase activity. This conditional gain-of-function system was validated in multiple tissues by crossing with mice expressing CRE recombinase under the transcriptional control of cytokeratin14 (K14), murine mammary tumor virus (MMTV) or cytochrome P450 Cyp1A1 (Ah) promoters, driving appropriate expression in the epidermis, mammary or intestinal epithelia respectively. Given the interest in ROCK signaling in normal physiology and disease, this mouse line will facilitate research into the consequences of ROCK activation that could be used to complement conditional knockout models

WILLINGNESS-TO-PAY FOR VALUE ADDED BRED HEIFER CHARACTERISTICS

Livestock Production/Industries,

A System for Accessible Artificial Intelligence

While artificial intelligence (AI) has become widespread, many commercial AI systems are not yet accessible to individual researchers nor the general public due to the deep knowledge of the systems required to use them. We believe that AI has matured to the point where it should be an accessible technology for everyone. We present an ongoing project whose ultimate goal is to deliver an open source, user-friendly AI system that is specialized for machine learning analysis of complex data in the biomedical and health care domains. We discuss how genetic programming can aid in this endeavor, and highlight specific examples where genetic programming has automated machine learning analyses in previous projects.Comment: 14 pages, 5 figures, submitted to Genetic Programming Theory and Practice 2017 worksho

Domain Walls Motion and Resistivity in a Fully-Frustrated Josephson Array

It is identified numerically that the resistivity of a fully-frustrated Josephson-junction array is due to motion of domain walls in vortex lattice rather than to motion of single vortices

Moving Wigner Glasses and Smectics: Dynamics of Disordered Wigner Crystals

We examine the dynamics of driven classical Wigner solids interacting with quenched disorder from charged impurities. For strong disorder, the initial motion is plastic -- in the form of crossing winding channels. For increasing drive, the disordered Wigner glass can reorder to a moving Wigner smectic -- with the electrons moving in non-crossing 1D channels. These different dynamic phases can be related to the conduction noise and I(V) curves. For strong disorder, we show criticality in the voltage onset just above depinning. We also obtain the dynamic phase diagram for driven Wigner solids and prove that there is a finite threshold for transverse sliding, recently found experimentally.Comment: 4 pages, 4 postscript figure

Numerical methods for non-LTE line radiative transfer: Performance and convergence characteristics

Comparison is made between a number of independent computer programs for radiative transfer in molecular rotational lines. The test models are spherically symmetric circumstellar envelopes with a given density and temperature profile. The first two test models have a simple power law density distribution, constant temperature and a fictive 2-level molecule, while the other two test models consist of an inside-out collapsing envelope observed in rotational transitions of HCO+. For the 2-level molecule test problems all codes agree well to within 0.2%, comparable to the accuracy of the individual codes, for low optical depth and up to 2% for high optical depths (tau=4800). The problem of the collapsing cloud in HCO+ has a larger spread in results, ranging up to 12% for the J=4 population. The spread is largest at the radius where the transition from collisional to radiative excitation occurs. The resulting line profiles for the HCO+ J=4-3 transition agree to within 10%, i.e., within the calibration accuracy of most current telescopes. The comparison project and the results described in this paper provide a benchmark for future code development, and give an indication of the typical accuracy of present day calculations of molecular line transfer.Comment: Accepted for publication in A&

Superconducting Fluxon Pumps and Lenses

We study stochastic transport of fluxons in superconductors by alternating current (AC) rectification. Our simulated system provides a fluxon pump, "lens", or fluxon "rectifier" because the applied electrical AC is transformed into a net DC motion of fluxons. Thermal fluctuations and the asymmetry of the ratchet channel walls induce this "diode" effect, which can have important applications in devices, like SQUID magnetometers, and for fluxon optics, including convex and concave fluxon lenses. Certain features are unique to this novel two-dimensional (2D) geometric pump, and different from the previously studied 1D ratchets.Comment: Phys. Rev. Lett. 83, in press (1999); 4 pages, 5 .gif figures; figures also available at http://www-personal.engin.umich.edu/~nori/ratche