Contra Epstein, Good Explanations Predict

Epstein has argued that an explanation\'s capacity to make predictions should play a minor role in its evaluation . This view contradicts centuries of scientific practice and, at least, decades of philosophy of science. We argue that the view is not only unfounded but seems to arise from a mistaken fear that ABM models are in need of defense against the criticism that they don\'t necessarily forecast events in the natural or social world.ABM, Agent Based Model, Modeling, Prediction, Explanation, Philosophy of Science

Trained laser-patterned carbon as high-performance mechanical sensors

We describe the mechanical properties of turbostratically graphitized carbon films obtained by carbon laser-patterning (CLaP) and their application as bending or mechanical pressure sensors. Stable conductive carbonized films were imprinted on a flexible polyethylene terephthalate (PET) substrate by laser-induced carbonization. After initial gentle bending, i.e. training, these sponge-like porous films show a quantitative and reversible change in resistance upon bending or application of pressure in normal loading direction. Maximum response values of ΔR/R0 = 388% upon positive bending (tensile stress) and −22.9% upon negative bending (compression) are implicit for their high sensitivity towards mechanical deformation. Normal mechanical loading in a range between 0 and 500 kPa causes a response between ΔR/R0 = 0 and −15%. The reversible increase or decrease in resistance is attributed to compression or tension of the turbostratically graphitized domains, respectively. This mechanism is supported by a detailed microstructural and chemical high-resolution transmission electron microscopic analysis of the cross-section of the laser-patterned carbon

Loss of Arabidopsis matrix metalloproteinase-5 affects root development and root bacterial communities during drought stress

Matrix metalloproteinases (MMPs) are zinc-dependent endo-peptidases that in mammals are known to be involved in remodeling the extracellular matrix (ECM) in developmental and pathological processes. In this study, we report At5-MMP of Arabidopsis thaliana to be important for root development and root bacterial communities. At5-MMP is mainly localized in the root vasculature and lateral root, an At5-MMP T-DNA insertion mutant (mmp5 KO) showed reduced root growth and a lower number of root apexes, causing reduced water uptake from the soil. Subsequently, mmp5 KO is sensitive to drought stress. Inhibited auxin transport was accompanied with resistance to indole-3-acetic acid (IAA), 2, 4-dichlorophenoxyacetic acid (2, 4-D), and 1-naphthaleneacetic acid (NAA). The content of endogenous abscisic acid (ABA) was lower in roots of mmp5 KO than in wild type. Genes responsive to ABA as well as genes encoding enzymes of the proline biosynthesis were expressed to a lower extent in mmp5 KO than in wild type. Moreover, drought stress modulated root-associated bacterial communities of mmp5 KO: the number of Actinobacteria increased. Therefore, At5-MMP modulates auxin/ABA signaling rendering the plant sensitive to drought stress and recruiting differential root bacterial communities

A DNA Origami Platform for Quantifying Protein Copy Number in Super-Resolution

Single-molecule-based super-resolution microscopy offers researchers a unique opportunity to quantify protein copy number with nanoscale resolution. However, while fluorescent proteins have been characterized for quantitative imaging using calibration standards, similar calibration tools for immunofluorescence with small organic fluorophores are lacking. Here we show that DNA origami, in combination with GFP antibodies, is a versatile platform for calibrating fluorophore and antibody labeling efficiency to quantify protein copy number in cellular contexts using super-resolution microscopy

Dynein Achieves Processive Motion Using both Stochastic and Coordinated Stepping

Processivity, the ability of single molecules to move continuously along a track, is a fundamental requirement of cargo-transporting molecular motors. Here, we investigate how cytoplasmic dynein, a homodimeric, microtubule-based motor, achieves processive motion. To do this, we developed a versatile method for assembling Saccharomyces cerevisiae dynein heterodimers, using complementary DNA oligonucleotides covalently linked to dynein monomers labeled with different organic fluorophores. Using two-color, single-molecule microscopy and high-precision, two-dimensional tracking, we find that dynein has a highly variable stepping pattern that is distinct from all other processive cytoskeletal motors, which use \u27hand-over-hand\u27 mechanisms. Uniquely, dynein stepping is stochastic when its two motor domains are close together. However, coordination emerges as the distance between motor domains increases, implying that a tension-based mechanism governs these steps. This plasticity may allow tuning of dynein for its diverse cellular functions

Field Reentrance of the Hidden Order State of URu2Si2 under Pressure

Combination of neutron scattering and thermal expansion measurements under pressure shows that the so-called hidden order phase of URu2Si2 reenters in magnetic field when antiferromagnetism (AF) collapses at H_AF (T). Macroscopic pressure studies of the HO-AF boundaries were realized at different pressures via thermal expansion measurements under magnetic field using a strain gauge. Microscopic proof at a given pressure is the reappearance of the resonance at Q_0=(1,0,0) under field which is correlated with the collapse of the AF Bragg reflections at Q_0.Comment: 5 pages, 6 figures, accepted for publication in J. Phys. Soc. Jp

Valence and magnetic ordering in intermediate valence compounds : TmSe versus SmB6

The intermediate valent systems TmSe and SmB6 have been investigated up to 16 and 18 GPa by ac microcalorimetry with a pressure (p) tuning realized in situ at low temperature. For TmSe, the transition from an antiferromagnetic insulator for p<3 GPa to an antiferromagnetic metal at higher pressure has been confirmed. A drastic change in the p variation of the Neel temperature (Tn) is observed at 3 GPa. In the metallic phase (p>3 GPa), Tn is found to increase linearly with p. A similar linear p increase of Tn is observed for the quasitrivalent compound TmS which is at ambiant pressure equivalent to TmSe at p=7 GPa. In the case of SmB6 long range magnetism has been detected above p=8 GPa, i.e. at a pressure slightly higher than the pressure of the insulator to metal transition. However a homogeneous magnetic phase occurs only above 10 GPa. The magnetic and electronic properties are related to the renormalization of the 4f wavefunction either to the divalent or the trivalent configurations. As observed in SmS, long range magnetism in SmB6 occurs already far below the pressure where a trivalent Sm3+ state will be reached. It seems possible, to describe roughly the physical properties of the intermediate valence equilibrium by assuming formulas for the Kondo lattice temperature depending on the valence configuration. Comparison is also made with the appearance of long range magnetism in cerium and ytterbium heavy fermion compounds.Comment: 22 pages including figure