Exploring the Ecology of Establishing Oak Trees in Urban Settings of the Northeast

Urban forests notoriously lack diversity in the biological communities that inhabit them, from the age and species composition of street trees to wildlife populations. In reaction to invasions of nonnative insects and diseases as well as predicted response to climate change, an emerging number of community foresters and tree wardens are expanding their urban tree planting practices to include a broader assemblage of tree species. These include oaks, among other species able to tolerate and adapt to urban conditions. Oaks are potentially favorable in regions like the northeastern U.S., where they grow extensively in rural forests and demonstrate potential resistance to specific urban pests that have caused challenges for other historically popular and extensively planted street trees. Additionally, they are known to feature a number of wildlife benefits, and their ranges in the Northeast are predicted to expand under many future climate change forecast models. We examine the role of oaks in the urban environment through the lens of the urban forest diversity deficit, reviewing topics that include diversity recommendations, threats by nonnative insects and diseases, and the human-wildlife interface. The goal of this work is to encourage careful consideration of where and when to plant oak trees to help professionals address issues of uniformity, while achieving benefits for urban forest ecosystems and residents

Wildlife Habitat Management on College and University Campuses

With the increasing involvement of higher education institutions in sustainability movements, it remains unclear to what extent college and university campuses address wildlife habitat. Many campuses encompass significant areas of green space with potential to support diverse wildlife taxa. However, sustainability rating systems generally emphasize efforts like recycling and energy conservation over green landscaping and grounds maintenance. We sought to examine the types of wildlife habitat projects occurring at schools across the United States and whether or not factors like school type (public or private), size (number of students), urban vs. rural setting, and funding played roles in the implementation of such initiatives. Using case studies compiled by the National Wildlife Federation’s Campus Ecology program, we documented wildlife habitat-related projects at 60 campuses. Ten management actions derived from nationwide guidelines were used to describe the projects carried out by these institutions, and we recorded data about cost, funding, and outreach and education methods. We explored potential relationships among management actions and with school characteristics. We extracted themes in project types, along with challenges and responses to those challenges. Native plant species selection and sustainable lawn maintenance and landscaping were the most common management actions among the 60 campuses. According to the case studies we examined, we found that factors like school type, size, and location did not affect the engagement of a campus in wildlife habitat initiatives, nor did they influence the project expenditures or funding received by a campus. Our results suggest that many wildlife habitat initiatives are feasible for higher education institutions and may be successfully implemented at relatively low costs through simple, but deliberate management actions

Genetic Correlates of Brain Aging on MRI and Cognitive Test Measures: A Genome-Wide Association and Linkage Analysis in the Framingham Study

BACKGROUND: Brain magnetic resonance imaging (MRI) and cognitive tests can identify heritable endophenotypes associated with an increased risk of developing stroke, dementia and Alzheimer's disease (AD). We conducted a genome-wide association (GWA) and linkage analysis exploring the genetic basis of these endophenotypes in a community-based sample. METHODS: A total of 705 stroke- and dementia-free Framingham participants (age 62 +9 yrs, 50% male) who underwent volumetric brain MRI and cognitive testing (1999–2002) were genotyped. We used linear models adjusting for first degree relationships via generalized estimating equations (GEE) and family based association tests (FBAT) in additive models to relate qualifying single nucleotide polymorphisms (SNPs, 70,987 autosomal on Affymetrix 100K Human Gene Chip with minor allele frequency ≥ 0.10, genotypic call rate ≥ 0.80, and Hardy-Weinberg equilibrium p-value ≥ 0.001) to multivariable-adjusted residuals of 9 MRI measures including total cerebral brain (TCBV), lobar, ventricular and white matter hyperintensity (WMH) volumes, and 6 cognitive factors/tests assessing verbal and visuospatial memory, visual scanning and motor speed, reading, abstract reasoning and naming. We determined multipoint identity-by-descent utilizing 10,592 informative SNPs and 613 short tandem repeats and used variance component analyses to compute LOD scores. RESULTS: The strongest gene-phenotype association in FBAT analyses was between SORL1 (rs1131497; p = 3.2 × 10-6) and abstract reasoning, and in GEE analyses between CDH4 (rs1970546; p = 3.7 × 10-8) and TCBV. SORL1 plays a role in amyloid precursor protein processing and has been associated with the risk of AD. Among the 50 strongest associations (25 each by GEE and FBAT) were other biologically interesting genes. Polymorphisms within 28 of 163 candidate genes for stroke, AD and memory impairment were associated with the endophenotypes studied at p < 0.001. We confirmed our previously reported linkage of WMH on chromosome 4 and describe linkage of reading performance to a marker on chromosome 18 (GATA11A06), previously linked to dyslexia (LOD scores = 2.2 and 5.1). CONCLUSION: Our results suggest that genes associated with clinical neurological disease also have detectable effects on subclinical phenotypes. These hypothesis generating data illustrate the use of an unbiased approach to discover novel pathways that may be involved in brain aging, and could be used to replicate observations made in other studies.National Institutes of Health National Center for Research Resources Shared Instrumentation grant (ISI0RR163736-01A1); National Heart, Lung, and Blood Institute's Framingham Heart Study (N01-HC-25195); National Institute of Aging (5R01-AG08122, 5R01-AG16495); National Institute of Neurological Disorders and Stroke (5R01-NS17950

Calibration of a two-phase xenon time projection chamber with a 37^{37}Ar source

We calibrate a two-phase xenon detector at 0.27 keV in the charge channel and at 2.8 keV in both the light and charge channels using a $^{37}$Ar source that is directly released into the detector. We map the light and charge yields as a function of electric drift field. For the 2.8 keV peak, we calculate the Thomas-Imel box parameter for recombination and determine its dependence on drift field. For the same peak, we achieve an energy resolution, $E_{\sigma}/E_{mean}$, between 9.8% and 10.8% for 0.1 kV/cm to 2 kV/cm electric drift fields.Comment: 12 pages, 7 figure

Pathway analysis following association study

Genome-wide association studies often emphasize single-nucleotide polymorphisms with the smallest p-values with less attention given to single-nucleotide polymorphisms not ranked near the top. We suggest that gene pathways contain valuable information that can enable identification of additional associations. We used gene set information to identify disease-related pathways using three methods: gene set enrichment analysis (GSEA), empirical enrichment p-values, and Ingenuity pathway analysis (IPA). Association tests were performed for common single-nucleotide polymorphisms and aggregated rare variants with traits Q1 and Q4. These pathway methods were evaluated by type I error, power, and the ranking of the VEGF pathway, the gene set used in the simulation model. GSEA and IPA had high power for detecting the VEGF pathway for trait Q1 (91.2% and 93%, respectively). These two methods were conservative with deflated type I errors (0.0083 and 0.0072, respectively). The VEGF pathway ranked 1 or 2 in 123 of 200 replicates using IPA and ranked among the top 5 in 114 of 200 replicates for GSEA. The empirical enrichment method had lower power and higher type I error. Thus pathway analysis approaches may be useful in identifying biological pathways that influence disease outcomes

Optimization of Supercritical Carbon Dioxide Extraction of Rice Bran Oil and γ-Oryzanol Using Multi-Factorial Design of Experiment

After rice harvesting, the milling processes generate many by-products including husk, bran, germs, and broken rice representing around 40% of the total grain. Bran, one of the external cereal layers, contains proteins, dietary fibers, minerals, and lipids. One of the most common rice bran utilization is the extraction of rice bran oil (RBO). Among all vegetable oils, RBO presents a unique chemical composition rich in antioxidant compounds such as γ-oryzanol that provide several beneficial properties. RBO is generally extracted by exploiting hexane, a solvent toxic to the environment and human health. The growing demand for this oil has led researchers to look for more sustainable extraction techniques. Supercritical carbon dioxide (SC-CO2) has been successfully applied to extract oil and functional compounds from several matrices. In this work, the SC-CO2 extraction of RBO was optimized using a Design of Experiment (DoE) on a pilot scale. "The DoE approach involving multilinear regression allowed modelling the yield in RBO and gamma oryzanol as a function of temperature and pressure, keeping the extraction time constant, as decided by the company. This approach made it possible to optimize the extraction yield and to identify the best temperature (40 °C), while also highlighting that pressure did not play any influential role in the process, at least concerning the analyzed experimental domain on this industrial plant. A model for computing the extraction yield as a function of temperature and pressure was obtained. This study shows that it is possible to obtain good quality RBO, rich in γ-oryzanol and essential fatty acids, using low temperatures and pressures, starting from a rice milling by-product. Graphical Abstract: [Figure not available: see fulltext.

Herpesvirus bovino 1 (BoHV-1): actualización de las cepas circulantes en Argentina

BoHV-1 genera en el ganado bovino una amplia gama de manifestaciones clínicas, tales como la rinotraqueítis infecciosa bovina, abortos y vulvovaginitis pustular infecciosa, que dependen de la virulencia del virus y del estado inmunitario del hospedador. En este trabajo se caracterizaron en Argentina 44 aislamientos de BoHV-1 por el análisis de restricción con endonucleasas (REA). El ADN viral fue sometido al clivaje de la enzima HindIII, la cual permite la diferenciación entre los subtipos 1.1, 1.2a y 1.2b. De acuerdo al perfil REA de los aislamientos, 35 cepas (80%) mostraron un patrón similar a la cepa K22 (prototipo BoHV1.2b), 7 cepas (16%) exhibieron un patrón similar a la cepa LA (prototipo BoHV-1.1) y sólo 2 cepas (4%) revelaron un patrón similar a la cepa ST (prototipo BoHV-1.2a). Los resultados demuestran una mayor prevalencia del subtipo 1.2b entre los aislamientos BoHV-1 argentinos. Además, se reporta por primera vez en Argentina, la circulación del subtipo BoHV-1.2

The Status of Masked Bobwhite Recovery in the United States and Mexico

The masked bobwhite (Colinus virginianus ridgwayi) is an endangered species currently numbering \u3c1500 individuals and restricted to 2 locales in southeastern Arizona and northcentral Sonora, Mexico. The subspecies\u27 endangered status is attributed to overgrazing of Sonora savanna grassland that began during the late 1880\u27s and continued well into the 20th century. This overgrazing resulted in the conversion of many native grass pastures to the exotic bufflegrass (Cenchrus ciliaris). The Arizona masked bobwhite population was extirpated around the turn of the century, and the Sonoran population was thought to have disappeared during the 1940\u27s until a small remnant population was discovered on a ranch near Benjamin Hill, Sonora , in 1964 . Masked bobwhite recovery efforts have a dynamic, long history of nearly six decades. Current masked bobwhite recovery efforts focus on reestablishing a self-sustaining population on the Buenos Aires National Wildlife Refuge (BANWR) in the United States, as well as 2 remnant wild populations located on privately owned ranches in northcentral Sonora