The direct boundary element method: 2D site effects assessment on laterally varying layered media (methodology)

The Direct Boundary Element Method (DBEM) is presented to solve the elastodynamic field equations in 2D, and a complete comprehensive implementation is given. The DBEM is a useful approach to obtain reliable numerical estimates of site effects on seismic ground motion due to irregular geological configurations, both of layering and topography. The method is based on the discretization of the classical Somigliana's elastodynamic representation equation which stems from the reciprocity theorem. This equation is given in terms of the Green's function which is the full-space harmonic steady-state fundamental solution. The formulation permits the treatment of viscoelastic media, therefore site models with intrinsic attenuation can be examined. By means of this approach, the calculation of 2D scattering of seismic waves, due to the incidence of P and SV waves on irregular topographical profiles is performed. Sites such as, canyons, mountains and valleys in irregular multilayered media are computed to test the technique. The obtained transfer functions show excellent agreement with already published results

The use of direct boundary element method for gaining insight into complex seismic site response

The boundary element method is specially well suited for the analysis of the seismic response of valleys of complicated topography and stratigraphy. In this paper the method’s capabilities are illustrated using as an example an irregularity stratified (test site) sedimentary basin that has been modelled using 2D discretization and the Direct Boundary Element Method (DBEM). Site models displaying different levels of complexity are used in practice. The multi-layered model’s seismic response shows generally good agreement with observed data amplification levels, fundamental frequencies and the high spatial variability. Still important features such as the location of high frequencies peaks are missing. Even 2D simplified models reveal important characteristics of the wave field that 1D modelling does not show up

A computer code for forward calculation and inversion of the H/V spectral ratio under the diffuse field assumption

During a quarter of a century, the main characteristics of the horizontal-to-vertical spectral ratio of ambient noise HVSRN have been extensively used for site effect assessment. In spite of the uncertainties about the optimum theoretical model to describe these observations, several schemes for inversion of the full HVSRN curve for near surface surveying have been developed over the last decade. In this work, a computer code for forward calculation of H/V spectra based on the diffuse field assumption (DFA) is presented and tested.It takes advantage of the recently stated connection between the HVSRN and the elastodynamic Green's function which arises from the ambient noise interferometry theory. The algorithm allows for (1) a natural calculation of the Green's functions imaginary parts by using suitable contour integrals in the complex wavenumber plane, and (2) separate calculation of the contributions of Rayleigh, Love, P-SV and SH waves as well. The stability of the algorithm at high frequencies is preserved by means of an adaptation of the Wang's orthonormalization method to the calculation of dispersion curves, surface-waves medium responses and contributions of body waves. This code has been combined with a variety of inversion methods to make up a powerful tool for passive seismic surveying.Comment: Published in Computers & Geosciences 97, 67-7

The inversion of spectral ratio H/V in a layered system using the Diffuse Field Assumption (DFA)

In order to evaluate the site effects on seismic ground motion and establish preventive measures to mitigate these effects, the dynamic characterization of sites is mandatory. Among the various geophysical tools aimed to this end, the horizontal to vertical spectral ratio (H/V) is a simple way to assess the dominant frequency of a site from seismic ambient noise. The aim of this communication is contributing to enhance the potential of this measurement with a novel method that allows extracting from the H/V the elastic properties of the subsoil, assumed here as a multilayer medium. For that purpose, we adopt the Diffuse Field Assumption from both the experimental and the modeling perspectives. At the experimental end, the idea is to define general criteria that make the data processing closely supported by theory. On the modeling front, the challenge is to compute efficiently the imaginary part of Green’s function. The Cauchy’s residue theory in the horizontal wavenumber complex plane is the selected approach. This method allows both identifying the contributions of body and surface waves and computing them separately. This permits exploring the theoretical properties of the H/V under different compositions of the seismic ambient noise. This answers some questions that historically aroused and gives new insights into the H/V method. The efficient forward calculation is the prime ingredient of an inversion scheme based on both gradient and heuristic searches. The availability of efficient forward calculation of H/V allows exploring some relevant relationships between the H/V curves and the parameters. This allows generating useful criteria to speed up inversion. As in many inverse problems, the non-uniqueness issues also emerge here. A joint inversion method that considers also the dispersion curves of surface waves extracted from seismic ambient noise is presented and applied to experimental data. This joint scheme mitigates effectively the non-uniqueness

The Search of Diffusive Properties in Ambient Seismic Noise

Ambient seismic noise (ASN) is becoming of interest for geophysical exploration and engineering seismology as it is possible to exploit its potential for imaging. Theory asserts that the Green’s function can be retrieved from correlations within a diffuse field. Surface waves are the most conspicuous part of Green’s function in layered media. Thus, the velocities of surface waves can be obtained from ASN if the wavefield is diffuse. There is widespread interest in the conditions of emergence and properties of diffuse fields. In the applications, useful approximations of the Green’s function can be obtained from cross-correlations of recorded motions of ASN. An elastic field is diffuse if the illumination is azimuthally uniform and equipartitioned. It happens with the coda waves in earthquakes and has been verified in carefully planned experiments. For one of these data sets, the 1999 Chilpancingo (Mexico) experiment, there are some records of earthquake pre-events that undoubtedly are composed of ASN, so that the processing for coda can be tested on them. We decompose the ASN energies and study their equilibration. The scheme is inspired by the original experiment and uses the ASN recorded in an L-shaped array that allows the computation of spatial derivatives. It requires care in establishing the appropriate ranges for measuring parameters. In this search for robust indicators of diffusivity, we are led to establish that under certain circumstances, the S and P energy equilibration is a process that anticipates the diffusion regime (no necessarily isotropy), which justifies the use of horizontal-to-vertical spectral ratio in the theoretical context of diffusion

Characterization of multiple SPS knockout mutants reveals redundant functions of the four Arabidopsis sucrose phosphate synthase isoforms in plant viability, and strongly indicates that enhanced respiration and accelerated starch turnover can alleviate the blockage of sucrose biosynthesis

We characterized multiple knock-out mutants of the four Arabidopsis sucrose phosphate synthase (SPSA1, SPSA2, SPSB and SPSC) isoforms. Despite their reduced SPS activity, spsa1/spsa2, spsa1/spsb, spsa2/spsb, spsa2/spsc, spsb/spsc, spsa1/spsa2/spsb and spsa2/spsb/spsc mutants displayed wild type (WT) vegetative and reproductive morphology, and showed WT photosynthetic capacity and respiration. In contrast, growth of rosettes, flowers and siliques of the spsa1/spsc and spsa1/spsa2/spsc mutants was reduced compared with WT plants. Furthermore, these plants displayed a high dark respiration phenotype. spsa1/spsb/spsc and spsa1/spsa2/spsb/spsc seeds poorly germinated and produced aberrant and sterile plants. Leaves of all viable sps mutants, except spsa1/spsc and spsa1/spsa2/spsc, accumulated WT levels of nonstructural carbohydrates. spsa1/spsc leaves possessed high levels of metabolic intermediates and activities of enzymes of the glycolytic and tricarboxylic acid cycle pathways, and accumulated high levels of metabolic intermediates of the nocturnal starch-to-sucrose conversion process, even under continuous light conditions. Results presented in this work show that SPS is essential for plant viability, reveal redundant functions of the four SPS isoforms in processes that are important for plant growth and nonstructural carbohydrate metabolism, and strongly indicate that accelerated starch turnover and enhanced respiration can alleviate the blockage of sucrose biosynthesis in spsa1/spsc leaves.This work was partially supported by the Comisión Interministerial de Ciencia y Tecnología and Fondo Europeo de Desarrollo Regional (Spain) [grant numbers BIO2010-18239, BIO2013-49125-C2-1-P, BIO2008-02292 and BIO2011-28847-C02-02]. A.M.S-L. acknowledges a predoctoral fellowship from the Spanish Ministry of Science and Innovation. M.B. acknowledges a post-doctoral fellowship from the Public University of Navarra.Peer Reviewe

Soil application of volatile compounds emitted by Alternaria alternata enhance yield of pepper plants cultured under greenhouse conditions

Póster presentado en el 2nd World Congress on the use of Biostimulants in Agriculture, celebrado en Florencia del 16 al 19 de noviembre de 2015.Peer Reviewe

Volatile compounds emitted by the plant pathogen Alternaria alternata enhance photosynthesis and promote growth of Arabidopsis by increasing cytokinin production

Póster presentado en el Fresh & glycoprotein symposium, celebrado en Japón en septiembre de 2015.Peer Reviewe

Enhancing sucrose synthase activity results in increased levels of starch and ADP-glucose in maize (Zea mays L.) seed endosperms.

Póster presentado en el XIII Congresso Luso-Espanhol de Fisiologia Vegetal, celebrado en Lisboa del 24 al 28 de julio de 2013.Sucrose synthase (SuSy) is a highly regulated cytosolic enzyme that catalyzes the conversion of sucrose and a nucleoside diphosphate into the corresponding nucleoside diphosphate glucose and fructose. In cereal endosperms, it is widely assumed that the stepwise reactions of SuSy, UDPglucose pyrophosphorylase and ADPglucose (ADPG) pyrophosphorylase (AGP) take place in the cytosol to convert sucrose into ADPG necessary for starch biosynthesis, although it has been also suggested that SuSy may participate in the direct conversion of sucrose into ADPG. In this study, the levels of the major primary carbon metabolites, and the activities of starch metabolism related enzymes were assessed in endosperms of transgenic maize plants ectopically expressing StSUS4 , which encodes a potato SuSy isoform. A total of 29 fertile lines transformed with StSUS4 were obtained, 5 of them containing a single copy of the transgene that was still functional after five generations. The number of seeds per ear of the 5 transgenic lines containing a single StSUS4 copy was comparable to that of wild type (WT) control seeds. However, transgenic seeds accumulated 10-15% more starch at the mature stage, and contained a higher amylose/amylopectin balance than WT seeds. Endosperms of developing StSUS4-expressing seeds exhibited a significant increase in SuSy activity, and in starch and ADPG contents when compared with WT endosperms. No significant changes could be detected in the transgenic seeds in soluble sugars content, and in activities of starch metabolism related enzymes when compared to WT seeds. A suggested metabolic model is presented wherein both AGP and SuSy are involved in the production of ADPG linked to starch biosynthesis in maize endosperm cells.This research was partially supported by grant BIO2010-18239 from the Comisión Interministerial de Ciencia y Tecnología and Fondo Europeo de Desarrollo Regional (Spain), by Iden Biotechnology SL, and by the Government of Navarra (grant IIM01491.RI1).Peer Reviewe

Soil application of volatile compounds emitted by the plant pathogen Alternaria alternata enhance yield of pepper plants cultured under greenhouse conditions

Póster presentado en la International Conference "Plant Biotechnology: Green for Good III", celebrada en Olomouc (República Checa) del 15 al 18 de junio de 2015.Peer Reviewe