Rare Events in Remote Dark-Field Spectroscopy: An Ecological Case Study of Insects

In this paper, a novel detection scheme for the monitoring of insect ecosystems is presented. Our method is based on the remote acquisition of passive sunlight scattering by two insect species. Procedures to identify rare events in remote dark-field spectroscopy are explained. We further demonstrate how to reduce the spectral representation, and how to discriminate between sexes, using a hierarchical clustering analysis. One-day cycle showing the temporal activities of the two sexes as well as data on activity patterns in relation to temperature and wind is presented. We also give a few examples of the potential use of the technique for studying interactions between sexes on a time scale of milliseconds

Island biology and morphological divergence of the Skyros wall lizard Podarcis gaigeae: a combined role for local selection and genetic drift on color morph frequency divergence?

<p>Abstract</p> <p>Background</p> <p>Patterns of spatial variation in discrete phenotypic traits can be used to draw inferences about the adaptive significance of traits and evolutionary processes, especially when compared to patterns of neutral genetic variation. Population divergence in adaptive traits such as color morphs can be influenced by both local ecology and stochastic factors such as genetic drift or founder events. Here, we use quantitative color measurements of males and females of Skyros wall lizard, <it>Podarcis gaigeae</it>, to demonstrate that this species is polymorphic with respect to throat color, and the morphs form discrete phenotypic clusters with limited overlap between categories. We use divergence in throat color morph frequencies and compare that to neutral genetic variation to infer the evolutionary processes acting on islet- and mainland populations.</p> <p>Results</p> <p>Geographically close islet- and mainland populations of the Skyros wall lizard exhibit strong divergence in throat color morph frequencies. Population variation in throat color morph frequencies between islets was higher than that between mainland populations, and the effective population sizes on the islets were small (N_e:s < 100). Population divergence (F_ST) for throat color morph frequencies fell within the neutral F_ST-distribution estimated from microsatellite markers, and genetic drift could thus not be rejected as an explanation for the pattern. Moreover, for both comparisons among mainland-mainland population pairs and between mainland-islet population pairs, morph frequency divergence was significantly correlated with neutral divergence, further pointing to some role for genetic drift in divergence also at the phenotypic level of throat color morphs.</p> <p>Conclusions</p> <p>Genetic drift could not be rejected as an explanation for the pattern of population divergence in morph frequencies. In spite of an expected stabilising selection, throat color frequencies diverged in the islet populations. These results suggest that there is an interaction between selection and genetic drift causing divergence even at a phenotypic level in these small, subdivided populations.</p

Selection in parental species predicts hybrid evolution

AbstractWhile hybridization is recognized as important in evolution, its contribution to adaptation and diversification remains poorly understood. Using genomically diverged island populations of the homoploid hybrid Italian sparrow, we test predictions for phenotypic trait values and evolvability based on patterns of parental species divergence in four plumage color traits. We find associations between parental divergence and trait evolution in Italian sparrows. Fixed major QTL in species differences lead to hybrids with higher trait variation, and hence evolvability, than the parent species. Back and crown plumage show no correlation between current within-parent variability and among-parent differentiation. For these traits, Italian sparrow phenotypes are biased towards axes of high parental differentiation and show greater phenotypic novelty along axes of low current parental evolvability, as predicted when major QTL are involved in species differences. Crown color has consistently evolved back towards one parent, while back color varies among islands. We also find significant among-population diversification within the Italian sparrow. Hence, hybridization of the same parent species can generate different phenotypes. In conclusion, we find support for parental phenotypic divergence patterns reflecting divergence mechanisms, and hence such patterns can be useful in predicting how hybridization alters the potential to evolve and adapt.</jats:p

Remote nocturnal bird classification by spectroscopy in extended wavelength ranges

We present optical methods at a wide range of wavelengths for remote classification of birds. The proposed methods include eye-safe fluorescence and depolarization lidar techniques, passive scattering spectroscopy, and infrared (IR) spectroscopy. In this paper we refine our previously presented method of remotely classifying birds with the help of laser-induced beta-keratin fluorescence. Phenomena of excitation quenching are studied in the laboratory and are theoretically discussed in detail. It is shown how the ordered microstructures in bird feathers induce structural "colors" in the IR region with wavelengths of around 3-6 mu m. We show that transmittance in this region depends on the angle of incidence of the transmitted light in a species-specific way and that the transmittance exhibits a close correlation to the spatial periodicity in the arrangement of the feather barbules. We present a method by which the microstructure of feathers can be monitored in a remote fashion by utilization of thermal radiation and the wing beating of the bird. (C) 2011 Optical Society of Americ

Eukaryote hybrid genomes.

Interspecific hybridization is the process where closely related species mate and produce offspring with admixed genomes. The genomic revolution has shown that hybridization is common, and that it may represent an important source of novel variation. Although most interspecific hybrids are sterile or less fit than their parents, some may survive and reproduce, enabling the transfer of adaptive variants across the species boundary, and even result in the formation of novel evolutionary lineages. There are two main variants of hybrid species genomes: allopolyploid, which have one full chromosome set from each parent species, and homoploid, which are a mosaic of the parent species genomes with no increase in chromosome number. The establishment of hybrid species requires the development of reproductive isolation against parental species. Allopolyploid species often have strong intrinsic reproductive barriers due to differences in chromosome number, and homoploid hybrids can become reproductively isolated from the parent species through assortment of genetic incompatibilities. However, both types of hybrids can become further reproductively isolated, gaining extrinsic isolation barriers, by exploiting novel ecological niches, relative to their parents. Hybrids represent the merging of divergent genomes and thus face problems arising from incompatible combinations of genes. Thus hybrid genomes are highly dynamic and undergo rapid evolutionary change, including genome stabilization in which selection against incompatible combinations results in fixation of compatible ancestry block combinations within the hybrid species. The potential for rapid adaptation or speciation makes hybrid genomes a particularly exciting subject of in evolutionary biology. Here we summarize how introgressed alleles or hybrid species can establish and how the resulting hybrid genomes evolve

Resolution of conflict between parental genomes in a hybrid species

AbstractThe development of reproductive barriers against parent species is crucial during hybrid speciation, and post-zygotic isolation can be important in this process. Genetic incompatibilities that normally isolate the parent species can become sorted in hybrids to form reproductive barriers towards either parent. However, the extent to which this sorting process is systematically biased and therefore predictable in which loci are involved and which alleles are favored is largely unknown. Theoretically, reduced fitness in hybrids due to the mixing of differentiated genomes can be resolved through rapid evolution towards allelic combinations ancestral to lineage-splitting of the parent species, as these alleles have successfully coexisted in the past. However, for each locus, this effect may be influenced by its chromosomal location, function, and interactions with other loci. We use the Italian sparrow, a homoploid hybrid species that has developed post-zygotic barriers against its parent species, to investigate this prediction. We show significant bias towards fixation of the ancestral allele among 57 nuclear intragenic SNPs, particularly those with a mitochondrial function whose ancestral allele came from the same parent species as the mitochondria. Consistent with increased pleiotropy leading to stronger fitness effects, genes with more protein-protein interactions were more biased in favor of the ancestral allele. Furthermore, the number of protein-protein interactions was especially low among candidate incompatibilities still segregating within Italian sparrows, suggesting that low pleiotropy allows steep intraspecific clines in allele frequencies to form. Finally, we report evidence for pervasive epistatic interactions within one Italian sparrow population, particularly involving loci isolating the two parent species but not hybrid and parent. However there was a lack of classic incompatibilities and no admixture linkage disequilibrium. This suggests that parental genome admixture can continue to constrain evolution and prevent genome stabilization long after incompatibilities have been purged.</jats:p

3D-Printed Fluorescence Hyperspectral Lidar for Monitoring Tagged Insects

Insects play crucial roles in ecosystems, and how they disperse within their habitat has significant implications for our daily life. Examples include foraging ranges for pollinators, as well as the spread of disease vectors and pests. Despite technological advances with radio tags, isotopes, and genetic sequencing, insect dispersal and migration range remain challenging to study. The gold standard method of mark-recapture is tedious and inefficient. This paper demonstrates the construction of a compact, inexpensive hyperspectral fluorescence lidar. The system is based on off-the-shelf components and 3D printing. After evaluating the performance of the instrument in the laboratory, we demonstrate its efficient range-resolved fluorescence spectra in situ. We present daytime remote ranging and fluorescent identification of auto-powder-tagged honey bees. We also showcase range-, temporally- and spectrally-resolved free-flying mosquitoes, which were tagged through feeding on fluorescent-dyed sugar water. We conclude that violet light can efficiently excite administered sugar meals imbibed by flying insects. Our field experiences provide realistic expectations of signal-to-noise levels, which can be used in future studies. The technique is generally applicable and can efficiently monitor several tagged insect groups in parallel for comparative ecological analysis. This technique opens up a range of ecological experiments, which were previously unfeasible

Island biogeography and population divergence in the Skyros wall lizard

Islands are cradles for new biodiversity and provide natural laboratories for the study of population divergence. In my thesis, I investigated the role of different evolutionary processes in the population divergence in the Skyros wall lizard (Podarcis gaigeae), a species where islet populations have strongly diverged morphologies. I used replicate islet populations and their respective most proximate mainland populations to investigate how divergence has proceeded following the isolation of the islets. First, I combined bathymetric maps with sea level curves and molecular inferences based on Bayesian statistics to investigate the biogeographical history of populations. I found that islet populations have become isolated by vicariance following sea level rises during the last thousands of years, and no significant gene flow between populations. To investigate which processes are affecting population divergence, I studied patterns of divergence in coding genetic variation, traits assumed to be under simple Mendelian inheritance, morphological and behavioral traits. A clear pattern of parallel adaptive divergence in the islet environment emerged for traits mainly subjected to natural selection. Islet lizards were larger, greener and less prone to escape. Islet lizards were also less cryptic in their environments than were mainland lizards. Moreover, between-population variation in size and color was larger for islet- than for mainland populations. These patterns are indicative of a predation release. I also found that islet lizards have relatively wider and differently shaped heads as well as a stronger bite force in relation to mainland populations. Data on available food and realized diet suggest that these changes are adaptations to harder island diet. Together these data suggest that predation release and selection for a diet change have interacted and jointly driven the evolution of larger body sizes on islands. No general pattern of parallel divergence was found for traits subjected primarily to sexual selection. Instead, divergence in throat color morph frequency and sex pheromone composition were significantly correlated with neutral genetic divergence. This indicates that stochastic processes such as genetic drift have contributed to divergence of these traits. I also investigated if mate preferences for pheromones, throat color and body size could be driving population divergence. I found no population differences in preferences for throat color and body size, suggesting that mate choice does not drive divergence in these characters. Islet populations did, however, prefer scent from islet lizards, whereas mainland lizards were less discriminatory. This implies that there could be some mate discrimination against mainland lizards that disperse to islets. We also examined the effect of low population sizes and genetic drift on the Major Histocompatibility Complex (MHC), immune genes which are subjected to stabilizing natural and sexual selection. I found that MHC diversity was significantly correlated with neutral genetic divergence, suggesting an influence of genetic drift. I did, however, also find indications of selection counteracting genetic drift and preserving between-allele diversity in small populations. Finally, I investigated if there were any inbreeding effects due to small population sizes and genetic drift, and whether inbreeding effects differ between sexually- and naturally selected traits. I did not find any inbreeding effects on the naturally selected traits. In contrast, the size of a sexual signaling trait, ventral blue patches expressed only in male lizards, was significantly correlated with heterozygosity in mainland populations, but not in islet populations in spite of their lower heterozygosity levels. This suggests that sexually selected traits may be more sensitive to inbreeding, and that purging of deleterious mutations affecting the blue patches negatively may have occurred in islet populations. In conclusion, my thesis suggests that sexually selected traits are more prone to be affected by stochastic processes such as genetic drift than naturally selected traits. Natural selection does, however, interact with stochastic processes during evolutionary divergence

Sexual selection as a promoter of population divergence in male phenotypic characters: a study on mainland and islet lizard populations

Sexual selection is often viewed as a promoter of population divergence, although some forms of sexual selection could rather hamper divergence. In the present study, we investigated whether sexual selection promotes divergence in sexually-selected traits. We studied population variation in sexual selection in relation to colour morph and body size in islet and mainland populations of the Skyros wall lizard (Podarcis gaigeae). Females were most likely to mate with orange-throated males with small body sizes, and male body size and coloration were therefore subject to correlational sexual selection. By contrast, male mating probabilities were not affected by any female phenotypic character. We also found variation in a female resistance trait (escape propensity), with females being more prone to escape when exposed to males from other habitats. Sexual selection could potentially affect the frequencies of throat colour morphs in this species by favouring orange-throated males of small body size, although there was no evidence of sexual selection for local mates or rare phenotypes. The results obtained in the present study thus do not support a role for sexual selection as a promoter of population divergence in this species. (c) 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 106, 374389