Mapping drivers of tropical forest loss with satellite image time series and machine learning

The rates of tropical deforestation remain high, resulting in carbon emissions, biodiversity loss, and impacts on local communities. To design effective policies to tackle this, it is necessary to know what the drivers behind deforestation are. Since drivers vary in space and time, producing accurate spatially explicit maps with regular temporal updates is essential. Drivers can be recognized from satellite imagery but the scale of tropical deforestation makes it unfeasible to do so manually. Machine learning opens up possibilities for automating and scaling up this process. In this study, we developed and trained a deep learning model to classify the drivers of any forest loss—including deforestation—from satellite image time series. Our model architecture allows understanding of how the input time series is used to make a prediction, showing the model learns different patterns for recognizing each driver and highlighting the need for temporal data. We used our model to classify over 588 ′ 000 sites to produce a map detailing the drivers behind tropical forest loss. The results confirm that the majority of it is driven by agriculture, but also show significant regional differences. Such data is a crucial source of information to enable targeting specific drivers locally and can be updated in the future using free satellite data

BREIZHCROPS: A TIME SERIES DATASET FOR CROP TYPE MAPPING

International audienceAbstract. We present BreizhCrops, a novel benchmark dataset for the supervised classification of field crops from satellite time series. We aggregated label data and Sentinel-2 top-of-atmosphere as well as bottom-of-atmosphere time series in the region of Brittany (Breizh in local language), north-east France. We compare seven recently proposed deep neural networks along with a Random Forest baseline. The dataset, model (re-)implementations and pre-trained model weights are available at the associated GitHub repository (https://github.com/dl4sits/breizhcrops) that has been designed with applicability for practitioners in mind. We plan to maintain the repository with additional data and welcome contributions of novel methods to build a state-of-the-art benchmark on methods for crop type mapping

A Transcriptomic Biomarker to Quantify Systemic Inflammation in Sepsis - A Prospective Multicenter Phase II Diagnostic Study

Development of a dysregulated immune response discriminates sepsis from uncomplicated infection. Currently used biomarkers fail to describe simultaneously occurring pro- and anti-inflammatory responses potentially amenable to therapy.Marker candidates were screened by microarray and, after transfer to a platform allowing point-of-care testing, validated in a confirmation set of 246 medical and surgical patients. We identified up-regulated pathways reflecting innate effector mechanisms, while down-regulated pathways related to adaptive lymphocyte functions. A panel of markers composed of three up- (Toll-like receptor 5; Protectin; Clusterin) and 4 down-regulated transcripts (Fibrinogen-like 2; Interleukin-7 receptor; Major histocompatibility complex class II, DP alpha1; Carboxypeptidase, vitellogenic-like) described the magnitude of immune alterations. The created gene expression score was significantly greater in patients with definite as well as with possible/probable infection than with no infection (median (Q25/Q75): 80 (60/101)) and 81 (58/97 vs. 49 (27/66), AUC-ROC = 0.812 (95%-CI 0.755-0.869), p < 0.0001). Down-regulated lymphocyte markers were associated with prognosis with good sensitivity but limited specificity.Quantifying systemic inflammation by assessment of both pro- and anti-inflammatory innate and adaptive immune responses provides a novel option to identify patients-at-risk and may facilitate immune interventions in sepsis. © 2016 The Authors