1,482 research outputs found
A study of the geochemical and microbial interactions in acidic environments and their potential application for the bioremediation of acid mine drainage
Solid and liquid media for isolating and cultivating acidophilic and acid-tolerant sulfate-reducing bacteria
How does reward expectation influence cognition in the human brain?
The prospect of reward changes how we think and behave. We investigated how this occurs in the brain using a novel continuous performance task in which fluctuating reward expectations biased cognitive processes between competing spatial and verbal tasks. Critically, effects of reward expectancy could be distinguished from induced changes in task-related networks. Behavioral data confirm specific bias toward a reward-relevant modality. Increased reward expectation improves reaction time and accuracy in the relevant dimension while reducing sensitivity to modulations of stimuli characteristics in the irrelevant dimension. Analysis of functional magnetic resonance imaging data shows that the proximity to reward over successive trials is associated with increased activity of the medial frontal cortex regardless of the modality. However, there are modality-specific changes in brain activity in the lateral frontal, parietal, and temporal cortex. Analysis of effective connectivity suggests that reward expectancy enhances coupling in both early visual pathways and within the prefrontal cortex. These distributed changes in task-related cortical networks arise from subjectsâ representations of future events and likelihood of reward
A potential barrier to the spread of the invasive cladoceran Cercopagis pengoi (Ostroumov 1891) in the Northern Baltic Sea
The spread of the invasive cladoceran Cercopagis pengoi has been well documented in southern areas of the Baltic Sea, however, little research on this invasive species (nor the zooplankton community) has focused on the Gulf of Bothnia (Bothnian Sea and Bay). We analysed data collected over a 12â13 year period at two main stations, one coastal and one offshore, to examine the occurrence of C. pengoi, invasion dynamics, effects on natural zooplankton communities and associated environmental factors. Nine other stations in the Gulf of Bothnia were also examined and the contribution to three-spined stickleback (Gasterosteus aculeatus) diet was quantified. The zooplankton community response apparently differed between coastal and offshore stations with Bosmina, Eurytemora, and Acartia populations being influenced during peak abundances of C. pengoi. It appears that the native zooplankton community has some resilience, returning to its prior structure outside of peak invasion periods. C. pengoi, where present, contributed significantly to stickleback diet. We explored possible barriers for C. pengoi in the Bothnian Bay, suggesting that the low productive Bothnian Bay ecosystem may be incapable of supporting such a predator. This highlights the need for further studies, especially in the light of global climate change.Peer reviewe
Trends in bacterial and fungal communities in ant nests observed with Terminal-Restriction Fragment Length Polymorphism (T-RFLP) and Next Generation Sequencing (NGS) techniques-validity and compatibility in ecological studies
Microbes are ubiquitous and often occur in functionally and taxonomically complex communities. Unveiling these community dynamics is one of the main challenges of microbial research. Combining a robust, cost effective and widely used method such as Terminal Restriction Fragment Length Polymorphism (T-RFLP) with a Next Generation Sequencing (NGS) method (Illumina MiSeq), offers a solid alternative for comprehensive assessment of microbial communities. Here, these two methods were combined in a study of complex bacterial and fungal communities in the nest mounds of the ant Formica exsecta, with the aim to assess the degree to which these methods can be used to complement each other. The results show that these methodologies capture similar spatiotemporal variations, as well as corresponding functional and taxonomical detail, of the microbial communities in a challenging medium consisting of soil, decomposing plant litter and an insect inhabitant. Both methods are suitable for the analysis of complex environmental microbial communities, but when combined, they complement each other well and can provide even more robust results. T-RFLP can be trusted to show similar general community patterns as Illumina MiSeq and remains a good option if resources for NGS methods are lacking.Peer reviewe
Importance of coastal primary production in the northern Baltic Sea
In this study, we measured depth-dependent benthic microalgal primary production in a Bothnian Bay estuary to estimate the benthic contribution to total primary production. In addition, we compiled data on benthic microalgal primary production in the entire Baltic Sea. In the estuary, the benthic habitat contributed 17 % to the total annual primary production, and when upscaling our data to the entire Bothnian Bay, the corresponding value was 31 %. This estimated benthic share (31 %) is three times higher compared to past estimates of 10 %. The main reason for this discrepancy is the lack of data regarding benthic primary production in the northern Baltic Sea, but also that past studies overestimated the importance of pelagic primary production by not correcting for system-specific bathymetric variation. Our study thus highlights the importance of benthic communities for the northern Baltic Sea ecosystem in general and for future management strategies and ecosystem studies in particular.Peer reviewe
Allochthonous matter : an important factor shaping the phytoplankton community in the Baltic Sea
It is well-known that nutrients shape phytoplankton communities in marine systems, but in coastal waters allochthonous dissolved organic matter (ADOM) may also be of central importance. We studied how humic substances (proxy of ADOM) and other variables influenced the nutritional strategies, size structure and pigment content of the phytoplankton community along a south-north gradient in the Baltic Sea. During the summer, the proportion of mixotrophs increased gradually from the phosphorus-rich south to the ADOM-rich north, probably due to ADOM-fueled microbes. The opposite trend was observed for autotrophs. The chlorophyll a (Chl a): carbon (C) ratio increased while the levels of photoprotective pigments decreased from south to north, indicating adaptation to the darker humic-rich water in the north. Picocyanobacteria dominated in phosphorusrich areas while nanoplankton increased in ADOM- rich areas. During the winter-spring the phytoplankton biomass and concentrations of photoprotective pigments were low, and no trends with respect to autotrophs and mixotrophs were observed. Microplankton was the dominant size group in the entire study area. We conclude that changes in the size structure of the phytoplankton community, the Chl a: C ratio and the concentrations of photoprotective pigments are indicative of changes in ADOM, a factor of particular importance in a changing climate.Peer reviewe
Response of Coastal Phytoplankton to High Inflows of Terrestrial Matter
Climate change scenarios project that precipitation will increase in northern Europe, causing amplified inflows of terrestrial matter (tM) and inorganic nutrients to coastal areas. How this will affect the plankton community is poorly understood. A mesocosm experiment was carried out to investigate the influence of two levels of tM inputs on the composition, size-structure and productivity of a natural coastal phytoplankton community from the northern Baltic Sea. The tM addition caused browning of the water and decreased underwater light levels, while the concentrations of dissolved organic carbon (DOC) and inorganic nutrients increased. Microphytoplankton were promoted by tM addition, while in the controls picophytoplankton dominated the phytoplankton community. Inorganic nutrient availability was instrumental in defining the phytoplankton community composition and size-structure. As a response to tM addition, the phytoplankton increased their chlorophyll a content. This physiological adaptation helped to maintain high primary production rates at the low tM enrichment, but at the high tM load the primary production decreased as did the biomass of mesozooplankton. The ciliate biomass was high when the mesozooplankton biomass was low, indicating that a trophic cascade occurred in the system. Structural equation modeling showed that tM borne DOC promoted ciliates, while primary and bacterial production were disfavored. Thus, DOC originating from soils had an indirect negative effect on the mesozooplankton by reducing their food availability. Although, a positive correlation between heterotrophic bacteria and phytoplankton suggested coupling between phytoplankton produced carbon and heterotrophs growth. The results from our study indicate that river-borne DOC and inorganic nutrients have a large impact on the phytoplankton community, driving the system to the dominance of large diatoms. However, since river-borne humic substances cause browning of the water, phytoplankton increase their light harvesting pigments. At moderate inflow this helps to support the primary production, but at high inflows of terrestrial material the primary production will decrease. As high river inflows have been projected to be a consequence of climate change, we foresee that primary production will decrease in coastal areas in the future, and the impacts of such changes on the food web could be significant.Peer reviewe
Major differences in dissolved organic matter characteristics and bacterial processing over an extensive brackish water gradient, the Baltic Sea
Dissolved organic matter (DOM) in marine waters is a complex mixture of compounds and elements that contribute substantially to the global carbon cycle. The large reservoir of dissolved organic carbon (DOC) represents a vital resource for heterotrophic bacteria. Bacteria can utilise, produce, recycle and transform components of the DOM pool, and the physicochemical characteristics of this pool can directly influence bacterial activity; with consequences for nutrient cycling and primary productivity. In the present study we explored bacterial transformation of naturally occurring DOM across an extensive brackish water gradient in the Baltic Sea. Highest DOC utilisation (indicated by decreased DOC concentration) was recorded in the more saline southerly region where waters are characterised by more autochthonous DOM. These sites expressed the lowest bacterial growth efficiency (BGE), whereas in northerly regions, characterised by higher terrestrial and allochthonous DOM, the DOC utilisation was low and BGE was highest. Bacterial processing of the DOM pool in the south resulted in larger molecular weight compounds and compounds associated with secondary terrestrial humic matter being degraded, and a processed DOM pool that was more aromatic in nature and contributed more strongly to water colour; while the opposite was true in the north. Nutrient concentration and stoichiometry and DOM characteristics affected bacterial activity, including metabolic status (BGE), which influenced DOM transformations. Our study highlights dramatic differences in DOM characteristics and microbial carbon cycling in sub-basins of the Baltic Sea. These findings are critical for our understanding of carbon and nutrient biogeochemistry, particularly in light of climate change scenarios.Peer reviewe
Network mechanisms of intentional learning.
The ability to learn new tasks rapidly is a prominent characteristic of human behaviour. This ability relies on flexible cognitive systems that adapt in order to encode temporary programs for processing non-automated tasks. Previous functional imaging studies have revealed distinct roles for the lateral frontal cortices (LFCs) and the ventral striatum in intentional learning processes. However, the human LFCs are complex; they house multiple distinct sub-regions, each of which co-activates with a different functional network. It remains unclear how these LFC networks differ in their functions and how they coordinate with each other, and the ventral striatum, to support intentional learning. Here, we apply a suite of fMRI connectivity methods to determine how LFC networks activate and interact at different stages of two novel tasks, in which arbitrary stimulus-response rules are learnt either from explicit instruction or by trial-and-error. We report that the networks activate en masse and in synchrony when novel rules are being learnt from instruction. However, these networks are not homogeneous in their functions; instead, the directed connectivities between them vary asymmetrically across the learning timecourse and they disengage from the task sequentially along a rostro-caudal axis. Furthermore, when negative feedback indicates the need to switch to alternative stimulus-response rules, there is additional input to the LFC networks from the ventral striatum. These results support the hypotheses that LFC networks interact as a hierarchical system during intentional learning and that signals from the ventral striatum have a driving influence on this system when the internal program for processing the task is updated.This work was supported by Medical Research Council Grant (U1055.01.002.00001.01) and a European Research GrantPCIG13-GA-2013-618351 to AH. JBR is supported by the Wellcome Trust (103838). The authors report no conflicts of interest.This is the final version of the article. It first appeared from Elsevier via http://dx.doi.org/10.1016/j.neuroimage.2015.11.06
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