Plasticity in Colorectal Cancer: Why Cancer Cells Differentiate

The cancer stem cell hypothesis poses that the bulk of differentiated cells are non-tumorigenic and only a subset of cells with self-renewal capabilities drive tumor initiation and progression. This means that differentiation could have a tumor-suppressive effect. Accumulating evidence shows, however, that in some solid tumors, like colorectal cancer, such a hierarchical organization is necessary. The identification of Lgr5 as a reliable marker of normal intestinal epithelial stem cells, together with strategies to trace cell lineages within tumors and the possibility to selectively ablate these cells, have proven the relevance of Lgr5+ cells for cancer progression. On the contrary, the role of Lgr5− cells during this process remains largely unknown. In this review, we explore available evidence pointing towards possible selective advantages of cancer cells organized hierarchically and its resulting cell heterogeneity. Clear evidence of plasticity between cell states, in which loss of Lgr5+ cells can be replenished by dedifferentiation of Lgr5− cells, shows that cell hierarchies could grant adaptive traits to tumors upon changing selective pressures, including those derived from anticancer therapy, as well as during tumor progression to metastasis

Estimating pCO2 from remote sensing in the Belgian Coastal Zone

In coastal waters, a purely field observation based approach will probably be insufficient to better constrain estimates of air-sea CO2 fluxes, to study their inter-annual variability and their long-term changes. One approach to achieve these goals is to use remotely sensed fields of relevant biogeochemical variables to extrapolate available data, and produce maps of the partial pressure of CO2 (pCO2) and air-sea CO2 fluxes. In the open ocean this approach has to some extent been successfully used based on fields of chlorophyll-a (Chla) and sea surface temperature (SST). This approach remains challenging in coastal waters that have complex optical properties (Case-II waters) and that exhibit highly dynamic pCO2 temporal and spatial variations. In the frame of the Belgian funded BELCOLOUR-II project (Optical remote sensing of marine, coastal and inland waters; http://www.mumm.ac.be/BELCOLOUR/), three field cruises per year (April, July and September) for optical measurements were carried in 2007, 2008, 2009 in the Southern Bight of the North Sea (SBNS). Based on these data-sets, we derived algorithms to compute pCO2 from Chl-a and sea surface salinity (SSS) using multipolynomial regressions (MPR). Here we report the first application of the MPR algorithms to derive pCO2 fields in the Belgian coastal zone based on data gathered in 2007, using remote sensed Chl-a (MERIS) and SSS computed with a 3-D hydrodynamical model of SBNS (COHERENS).info:eu-repo/semantics/publishe

Quality of life in patients with locked-in syndrome: Evolution over a 6-year period

International audienceBackground: Improved knowledge of the quality of life (QoL) of locked-in syndrome (LIS) patients have implications for managing their care, and assists clinicians in choosing the most appropriate interventions. We performed a survey of a population of LIS patients to describe the course of the QoL of LIS patients over a 6-year period and to determine the potential predictive factors of QoL changes over time. Method: This is a study performed over a 6-year period in patients with a LIS diagnosis. Questionnaires were sent in 2007 and 2013. The following data were recorded: i) sociodemographic data; ii) clinical data related to LIS, physical/handicap status, psychological status; iii) self-reported QoL: Anamnestic Comparative Self-Assessment (ACSA); iv) Integration in life: French Reintegration to Normal Living Index (RNLI). Results: Among the 67 patients included in 2007, 39 (58 %) patients returned their questionnaire in 2013. The LIS etiology was stroke in 51 individuals. The QoL of the patients was relatively satisfactory compared to populations in other severe conditions. Twenty-one (70 %) individuals reported a stable/improved QoL between 2007 and 2013. The physical/handicap statuses in 2007 and 2013 were not related to the QoL 6 years later, with the exception of one communication parameter: the individuals who used yes-no code reported significantly lower QoL levels than those who did not in 2013. Discussion: In opposition to a widespread opinion, LIS persons report a relatively satisfactory QoL level that stays stable over time, suggesting that life with LIS is worth living. Preservation of autonomy and communication may help them to live as normal life as possible

REGARD PARENTAL SUR LES DEVOIRS ET LES LEÇONS EN FONCTION DES CARACTÉRISTIQUES FAMILIALES ET DU RENDEMENT DE L’ÉLÈVE

L’étude s’intéresse à certains aspects des devoirs et des leçons par l’entremise d’analyses menées à partir de regroupements de familles en fonction de la structure familiale, de la scolarité des parents et du rendement scolaire de l’enfant. L’échantillon est composé de 465 parents d’élèves de 1re et de 4e années du primaire. Les données ont été recueillies à l’aide de questionnaires autoadministrés au cours de la première année de l’étude. Les analyses de comparaison révèlent que les familles non traditionnelles et que les familles dont l’enfant éprouve des difficultés scolaires sont plus rébarbatives aux devoirs et aux leçons. Ces mêmes familles en perçoivent moins l’utilité que les autres. Les familles moins scolarisées et les familles ayant un enfant en difficulté se sentent moins compétentes pour intervenir de manière adéquate dans les devoirs et les leçons. Il appert que les besoins et les limites de ces familles doivent être pris en considération par les enseignants dans le cadre de l’assignation des devoirs et des leçons. Mots clés : devoirs et leçons, caractéristiques familiales, participation des parents, élèves du primaireIn the present study, various aspects of homework were examined in a sample of 465 parents of first and fourth grades students in relation to family structure, parent’s education and school achievement. Data were collected through self-report questionnaires during the first year of the study. Analyses show that non traditional families and families of children with learning difficulties are less willing to help with homework. Those families don’t perceive its benefits as much as other families do. Less schooling families and families of children with learning difficulties have low self-efficacy to intervene adequately in homework. Family needs and limits must be taken into consideration by teachers when assigning homework. Key words: homeworks and lessons, family characteristics, parents involvement, pupils of primary education

BeadNet: Deep learning-based bead detection and counting in low-resolution microscopy images

Motivation An automated counting of beads is required for many high-throughput experiments such as studying mimicked bacterial invasion processes. However, state-of-the-art algorithms under- or overestimate the number of beads in low-resolution images. In addition, expert knowledge is needed to adjust parameters. Results In combination with our image labeling tool, BeadNet enables biologists to easily annotate and process their data reducing the expertise required in many existing image analysis pipelines. BeadNet outperforms state-of-the-art-algorithms in terms of missing, added and total amount of beads. Availability and implementation BeadNet (software, code and dataset) is available at https://bitbucket.org/t_scherr/beadnet. The image labeling tool is available at https://bitbucket.org/abartschat/imagelabelingtool

Alternative splicing downstream of EMT enhances phenotypic plasticity and malignant behavior in colon cancer

Phenotypic plasticity allows carcinoma cells to transiently acquire the quasi-mesenchymal features necessary to detach from the primary mass and proceed along the invasion-metastasis cascade. A broad spectrum of epigenetic mechanisms is likely to cause the epithelial-to-mesenchymal (EMT) and mesenchymal-to-epithelial (MET) transitions necessary to allow local dissemination and distant metastasis. Here, we report on the role played by alternative splicing (AS) in eliciting phenotypic plasticity in epithelial malignancies with focus on colon cancer. By taking advantage of the coexistence of subpopulations of fully epithelial (EpCAM(hi)) and quasi-mesenchymal and highly metastatic (EpCAM(lo)) cells in conventional human cancer cell lines, we here show that the differential expression of ESRP1 and other RNA-binding proteins (RBPs) downstream of the EMT master regulator ZEB1 alters the AS pattern of a broad spectrum of targets including CD44 and NUMB, thus resulting in the generation of specific isoforms functionally associated with increased invasion and metastasis. Additional functional and clinical validation studies indicate that both the newly identified RBPs and the CD44s and NUMB2/4 splicing isoforms promote local invasion and distant metastasis and are associated with poor survival in colon cancer. The systematic elucidation of the spectrum of EMT-related RBPs and AS targets in epithelial cancers, apart from the insights in the mechanisms underlying phenotypic plasticity, will lead to the identification of novel and tumor-specific therapeutic targets