New and Corrected Floristic Records for Nebraska

Nineteen species (including eight Eurasian ones) are newly recorded for Nebraska: Alopecurus arundinaceus, Amaranthus californicus, Asclepias asperula, A. purpurascens, Cardamine {lexuosa*, Centaurea diffusa, Dipsacus laciniatus, Eriochloa villosa, Euclidium syriacum, Gentiana alba, Geranium viscosissimum, Geum vernum, Goodyera oblongifolia, Haplopappus multicaulis, Heterotheca latifolia, Lathyrus tuberosus, Polygonum douglasii, Scirpus saximontanus, Veronica biloba. Twenty-one others are shown to be more widespread in Nebraska than previously known, one has a more restricted range than previously reported, two (Scirpus smithii, S. torreyi) are deleted from the flora based upon corrected identifications, and the status of some rarely-collected species is updated. Thirty-two additions, two deletions, and two corrections to the recently published flora of Seward County are also presented along with thirteen additions to the flora of Keith County

New and Corrected Floristic Records for Nebraska

Nineteen species (including eight Eurasian ones) are newly recorded for Nebraska: Alopecurus arundinaceus, Amaranthus californicus, Asclepias asperula, A purpurascens, Cardamine {lexuosa*, Centaurea diffusa, Dipsacus laciniatus, Eriochloa villosa, Euclidium syriacum, Gentiana alba, Geranium viscosissimum, Geum vernum, Goodyera oblongifolia, Haplopappus multicaulis, Heterotheca latifolia, Lathyrus tuberosus, Polygonum douglasii, Scirpus saximontanus, Veronica biloba. Twenty-one others are shown to be more widespread in Nebraska than previously known, one has a more restricted range than previously reported, two (Scirpus smithii, S. torreyi) are deleted from the flora based upon corrected identifications, and the status of some rarely-collected species is updated. Thirty-two additions, two deletions, and two corrections to the recentlypublished flora of Seward County are also presented along with thirteen additions to the flora of Keith County

Identification of a system required for the functional surface localization of sugar binding proteins with class III signal peptides in Sulfolobus solfataricus

The hyperthermophilic archaeon Sulfolobus solfataricus contains an unusual large number of sugar binding proteins that are synthesized as precursors with a class III signal peptide. Such signal peptides are commonly used to direct archaeal flagellin subunits or bacterial (pseudo)pilins into extracellular macromolecular surface appendages. Likewise, S. solfataricus binding proteins have been suggested to assemble in higher ordered surface structures as well, tentatively termed the bindosome. Here we show that S. solfataricus contains a specific system that is needed for the functional surface localization of sugar binding proteins. This system, encoded by the bas (bindosome assembly system) operon, is composed of five proteins: basABC, three homologues of so-called bacterial (pseudo)pilins; BasE, a cytoplasmic ATPase; and BasF, an integral membrane protein. Deletion of either the three (pseudo)pilin genes or the basEF genes resulted in a severe defect of the cells to grow on substrates which are transported by sugar binding proteins containing class III signal peptides, while growth on glucose and maltose was restored when the corresponding genes were reintroduced in these cells. Concomitantly, ΔbasABC and ΔbasEF cells were severely impaired in glucose uptake even though the sugar binding proteins were normally secreted across the cytoplasmic membrane. These data underline the hypothesis that the bas operon is involved in the functional localization of sugar binding proteins at the cell surface of S. solfataricus. In contrast to surface structure assembly systems of Gram-negative bacteria, the bas operon seems to resemble an ancestral simplified form of these machineries.

Histone Deacetylase Complexes Promote Trinucleotide Repeat Expansions

Genetic analysis in budding yeast and in cultured human astrocytes reveals that specific histone deacetylase complexes accelerate expansion mutations in DNA triplet repeats

Experimental Microbial Evolution of Extremophiles

Experimental microbial evolutions (EME) involves studying closely a microbial population after it has been through a large number of generations under controlled conditions (Kussell 2013). Adaptive laboratory evolution (ALE) selects for fitness under experimentally imposed conditions (Bennett and Hughes 2009; Dragosits and Mattanovich 2013). However, experimental evolution studies focusing on the contributions of genetic drift and natural mutation rates to evolution are conducted under non-selective conditions to avoid changes imposed by selection (Hindré et al. 2012). To understand the application of experimental evolutionary methods to extremophiles it is essential to consider the recent growth in this field over the last decade using model non-extremophilic microorganisms. This growth reflects both a greater appreciation of the power of experimental evolution for testing evolutionary hypotheses and, especially recently, the new power of genomic methods for analyzing changes in experimentally evolved lineages. Since many crucial processes are driven by microorganisms in nature, it is essential to understand and appreciate how microbial communities function, particularly with relevance to selection. However, many theories developed to understand microbial ecological patterns focus on the distribution and the structure of diversity within a microbial population comprised of single species (Prosser et al. 2007). Therefore an understanding of the concept of species is needed. A common definition of species using a genetic concept is a group of interbreeding individuals that is isolated from other such groups by barriers of recombination (Prosser et al. 2007). An alternative ecological species concept defines a species as set of individuals that can be considered identical in all relevant ecological traits (Cohan 2001). This is particularly important because of the abundance and deep phylogenetic complexity of microbial communities. Cohan postulated that “bacteria occupy discrete niches and that periodic selection will purge genetic variation within each niche without preventing divergence between the inhabitants of different niches”. The importance of gene exchange mechanisms likely in bacteria and archaea and therefore extremophiles, arises from the fact that their genomes are divided into two distinct parts, the core genome and the accessory genome (Cohan 2001). The core genome consists of genes that are crucial for the functioning of an organism and the accessory genome consists of genes that are capable of adapting to the changing ecosystem through gain and loss of function. Strains that belong to the same species can differ in the composition of accessory genes and therefore their capability to adapt to changing ecosystems (Cohan 2001; Tettelin et al. 2005; Gill et al. 2005). Additional ecological diversity exists in plasmids, transposons and pathogenicity islands as they can be easily shared in a favorable environment but still be absent in the same species found elsewhere (Wertz et al. 2003). This poses a major challenge for studying ALE and community microbial ecology indicating a continued need to develop a fitting theory that connects the fluid nature of microbial communities to their ecology (Wertz et al. 2003; Coleman et al. 2006). Understanding the nature and contribution of different processes that determine the frequencies of genes in any population is the biggest concern in population and evolutionary genetics (Prosser et al. 2007) and it is critical for an understanding of experimental evolution

Impact of primary kidney disease on the effects of empagliflozin in patients with chronic kidney disease: secondary analyses of the EMPA-KIDNEY trial

Background: The EMPA KIDNEY trial showed that empagliflozin reduced the risk of the primary composite outcome of kidney disease progression or cardiovascular death in patients with chronic kidney disease mainly through slowing progression. We aimed to assess how effects of empagliflozin might differ by primary kidney disease across its broad population. Methods: EMPA-KIDNEY, a randomised, controlled, phase 3 trial, was conducted at 241 centres in eight countries (Canada, China, Germany, Italy, Japan, Malaysia, the UK, and the USA). Patients were eligible if their estimated glomerular filtration rate (eGFR) was 20 to less than 45 mL/min per 1·73 m2, or 45 to less than 90 mL/min per 1·73 m2 with a urinary albumin-to-creatinine ratio (uACR) of 200 mg/g or higher at screening. They were randomly assigned (1:1) to 10 mg oral empagliflozin once daily or matching placebo. Effects on kidney disease progression (defined as a sustained ≥40% eGFR decline from randomisation, end-stage kidney disease, a sustained eGFR below 10 mL/min per 1·73 m2, or death from kidney failure) were assessed using prespecified Cox models, and eGFR slope analyses used shared parameter models. Subgroup comparisons were performed by including relevant interaction terms in models. EMPA-KIDNEY is registered with ClinicalTrials.gov, NCT03594110. Findings: Between May 15, 2019, and April 16, 2021, 6609 participants were randomly assigned and followed up for a median of 2·0 years (IQR 1·5–2·4). Prespecified subgroupings by primary kidney disease included 2057 (31·1%) participants with diabetic kidney disease, 1669 (25·3%) with glomerular disease, 1445 (21·9%) with hypertensive or renovascular disease, and 1438 (21·8%) with other or unknown causes. Kidney disease progression occurred in 384 (11·6%) of 3304 patients in the empagliflozin group and 504 (15·2%) of 3305 patients in the placebo group (hazard ratio 0·71 [95% CI 0·62–0·81]), with no evidence that the relative effect size varied significantly by primary kidney disease (pheterogeneity=0·62). The between-group difference in chronic eGFR slopes (ie, from 2 months to final follow-up) was 1·37 mL/min per 1·73 m2 per year (95% CI 1·16–1·59), representing a 50% (42–58) reduction in the rate of chronic eGFR decline. This relative effect of empagliflozin on chronic eGFR slope was similar in analyses by different primary kidney diseases, including in explorations by type of glomerular disease and diabetes (p values for heterogeneity all >0·1). Interpretation: In a broad range of patients with chronic kidney disease at risk of progression, including a wide range of non-diabetic causes of chronic kidney disease, empagliflozin reduced risk of kidney disease progression. Relative effect sizes were broadly similar irrespective of the cause of primary kidney disease, suggesting that SGLT2 inhibitors should be part of a standard of care to minimise risk of kidney failure in chronic kidney disease. Funding: Boehringer Ingelheim, Eli Lilly, and UK Medical Research Council

An Annotated List of the Vascular Plants of Keith County, Nebraska

This study provides an annotated list of the vascular plants known to exist outside of cultivation in Keith County, Nebraska. Listed are a total of 599 species, subspecies and varieties belonging to 302 genera of 87 families. Notes are included about frequency and habitat for each of the taxa. 264 (44.1 %) of the taxa listed were previously unreported for Keith County. Additionally, the paper discusses vegetation regions in the county and gives information in tabular form about numbers of the flora in different taxa, the ten largest families, numbers of taxa of different growth habits, and numbers of taxa in different habitats

New Floristic Records for Nebraska-5

Recent field and herbarium studies have revealed the presence of 57 species, two varieties, and three hybrids of vascular plants and one moss not previously published with verification from Nebraska. Twenty-eight taxonomic entities are considered likely native in Nebraska, including: xAchnella caduca, Arabis divaricarpa, Aster ascendens, Atriplex suckleyi, Callitriche heterophylla, Campylium stellatum, Carex hirtifolia, Carex lasiocarpa var. americana, Chenopodium cycloides, C. pallescens, Dioscorea quaternata, Draba brachycarpa, Eleocharis wolfii, Elatine brachysperma, Elodea bifoliata, xElyhordeum iowense, xElyhordeum montanense, Eragrostis secundiflorus ssp. oxylepis, Erigeron lonchophyllus, Houstonia pusilla, Maianthemum canadense, Mirabilis exaltata, Myosotis verna, Pedicularis crenulata, Plantago rhodosperma, Potentilla simplex, Scutellaria parvula var. parvula, and Stachys hispida. Of the remaining 35 species and varieties, seven are indigenous to North America and seem to have entered the state along roadsides in recent years (Achnatherum robustum, Amaranthus powellii, Anemopsis californica, Argemone hispida, Bouteloua simplex, Solanum elaeagnifolium, and Sphaeralcea cuspidata var. angustifolia), while the remaining 27 represent Eurasian or tropical American introductions. Of these, eight species (Allium vineale, Centaurea maculosa, Digitalis lanata, Elaeagnus umbellata, Lonicera maackii, Myriophyllum spicatum, Pueraria lobata, and Rhamnus frangula) are serious pests outside Nebraska

New and Corrected Records of the Flora of Nebraska

New distributional data are provided for 27 species of vascular plants in Nebraska, eight newly recorded as growing wild in the State. The record of one species previously attributed to the State is shown to be based upon misidentified specimens, the range of another is shown to be much more restricted in Nebraska than previously reported, and nomenclature is corrected for two species