Collective dynamics of fermion clouds in cigar-shaped traps

The propagation of zero sound in a spin-polarized Fermi gas under harmonic confinement is studied as a function of the mean-field interactions with a second Fermi gas. A local-density treatment is compared with the numerical solution of the Vlasov-Landau equations for the propagation of density distortions in a trapped two-component Fermi gas at temperature T=0.2 Tf. The response of the gas to the sudden creation of a sharp hole at its centre is also studied numerically.Comment: 15 pages, 6 figure

Macrofaunal community structure and zonation of an Ecuadorian sandy beach (Bay of Valdivia)

The sandy beach macrofauna of the Bay of Valdivia (Ecuador) was sampled in August-September 1999 along six replicate transects between the high and low water line. The sediment consisted of well-sorted, fine to medium sand. Taking into account the dimensionless fall velocity (O) and the relative tidal range, the beach was characterized as an exposed, low tide terrace -rip beach. The distribution of the macrofauna was mainly determined by the elevation on the beach. Thirty-one taxa were found throughout the study, varying between 10 and 22 taxa per transect. Molluscs were the most dominant taxon (overall average: 285 ind/m2, max. : 2135 ind/m2), followed by crustaceans. The gastropod Olivella semistriata (overall average: 243 ind/m2, max. : 2131 ind/m2) was the most abundant species. The crustaceans were the most diverse taxon (10 spp.); Haustorius sp., Excirolana braziliensis and Emerita rathbunae were the most abundant species. Densities of polychaetes were low in comparison with the previous two taxa mentioned (overall average: 13 ind/m2). The total average density over the entire bay was 370 ind/m2. Three zones of macrofaunal distribution along the tidal gradient could be distinguished: an upper beach, a middle beach and a lower beach assemblage. The upper beach assemblage consisted mainly of Excirolana braziliensis and ghost crabs. The middle beach assemblage had highest macrofaunal densities and was dominated by Olivella semistriata andHaustorius sp. The most diverse assemblage was found on the low beach, with representatives of different taxa, but with lower densities. These results are in conformity with other studies along the Pacific coast of South America and fit into the zonation scheme of DAHL (1952). Given that many other studies from South America were done at temperate latitudes, we conclude that, although differences in species composition were found, the general pattern of macrobenthos zonation on sandy beaches is similar in tropical regions

Neglected zoonotic agents in cattle abortion: tackling the difficult to grow bacteria.

Coxiella burnetii, Chlamydia abortus and Leptospira spp. are difficult to grow bacteria that play a role in bovine abortion, but their diagnosis is hampered by their obligate intracellular lifestyle (C. burnetii, C. abortus) or their lability (Leptospira spp.). Their importance is based on the contagious spread in food-producing animals, but also as zoonotic agents. In Switzerland, first-line routine bacteriological diagnostics in cattle abortions is regulated by national law and includes only basic screening by staining for C. burnetii due to the high costs associated with extended spectrum analysis. The aim of this study was to assess the true occurrence of these zoonotic pathogens in 249 cases of bovine abortion in Switzerland by serology (ELISA for anti-C. burnetii and C. abortus antibodies and microscopic agglutination test for anti-Leptospira spp. antibodies), molecular methods (real-time PCR and sequencing of PCR products of Chlamydiales-positive cases), Stamp's modification of the Ziehl-Neelsen (mod-ZN) stain and, upon availability of material, by histology and immunohistochemistry (IHC). After seroanalysis the prevalence was 15.9% for C. burnetii, 38.5% for C. abortus and 21.4% for Leptospira spp. By real-time PCR 12.1% and 16.9% of the cases were positive for C. burnetii and Chlamydiales, respectively, but only 2.4% were positive for C. burnetii or Chlamydiales by mod-ZN stain. Sequencing of PCR products of Chlamydiales-positive cases revealed C. abortus in 10% of cases and the presence of a mix of Chlamydiales-related bacteria in 5.2% of cases. Pathogenic Leptospira spp. were detected in 5.6% of cases. Inflammatory lesions were present histologically in all available samples which were real-time PCR-positive for Chlamydiales and Leptospira spp. One of 12 real-time PCR-positive cases for C. burnetii was devoid of histological lesions. None of the pathogens could be detected by IHC. Molecular detection by real-time PCR complemented by histopathological analysis is recommended to improve definitive diagnosis of bovine abortion cases and determine a more accurate prevalence of these zoonotic pathogens

Tuberculosis determined by Mycobacterium bovis in captive waterbucks (Kobus ellipsiprymnus) in São Paulo, Brazil

Two waterbucks from São Paulo Zoo Foundation exhibited respiratory symptoms in July 2004. After euthanasia, granulommas in lungs and mediastinic lymph nodes were observed. Acid-fast bacilli isolated were identified as Mycobacterium bovis spoligotype SB0121 by PRA and spoligotyping. They were born and kept in the same enclosure with the same group, without any contact to other species housed in the zoo. This is the first detailed description of M. bovis infection in Kobus ellipsiprymnus.FAPES

Altered expression and activation of signal transducers and activators of transcription (STATs) in hepatitis C virus infection: in vivo and in vitro studies

BACKGROUND: Signal transducers and activators of transcription (STATs) play a critical role in antiviral defence. STAT3 is also important in cell protection against inflammatory damage. STAT proteins are activated by interferons and by hepatoprotective cytokines of the interleukin 6 superfamily, including cardiotrophin 1. METHODS: We analysed the status of STATs in hepatitis C virus (HCV) infected livers and the relationship between expression and activation of STATs and HCV replication in Huh7 cells transfected with HCV genomic replicon. RESULTS: STAT3alpha expression was reduced in HCV infected livers showing an inverse correlation with serum alanine aminotransferase. In patients with HCV infection, nuclear staining for phosphorylated STAT3 was faint in parenchymal cells (although conspicuous in infiltrating leucocytes), in contrast with strong nuclear staining in hepatocytes from control livers. Expression and activation of STAT1 (a factor activated by both interferon (IFN)-alpha and IFN-gamma) were increased in HCV infected livers, particularly in those with high inflammatory activity. Conversely, phosphorylated STAT2 (a factor selectively activated by IFN-alpha) was undetectable in livers with HCV infection, a finding that was associated with marked downregulation of the two functional subunits of the IFN-alpha receptor. HCV replication in Huh7 cells caused STAT3alpha downregulation and blocked STAT3 phosphorylation by either IFN-alpha or cardiotrophin 1. HCV replication in Huh7 cells also inhibited STAT1 and STAT2 activation by IFN-alpha while there was no impairment of STAT1 phosphorylation by the proinflammatory cytokine IFN-gamma. CONCLUSIONS: STAT3 is downregulated in HCV infected livers and in Huh7 cells bearing the full length HCV replicon. HCV replication is associated with impaired Jak-STAT signalling by antiviral and cytoprotective cytokines. These effects may favour viral replication while facilitating the progression of liver diseas

A Systematic Study on Energy Dependence of Quasi-Periodic Oscillation Frequency in GRS 1915+105

Systematically studying all the RXTE/PCA observations for GRS 1915+105 before November 2010, we have discovered three additional patterns in the relation between Quasi-Periodic Oscillation (QPO) frequency and photon energy, extending earlier outcomes reported by Qu et al. (2010). We have confirmed that as QPO frequency increases, the relation evolves from the negative correlation to positive one. The newly discovered patterns provide new constraints on the QPO models

Immunogenicity of variable regions of hepatitis C virus proteins: selection and modification of peptide epitopes to assess hepatitis C virus genotypes by ELISA

The immunogenicity of variable regions of hepatitis C virus (HCV) proteins was studied by ELISA by using 543 synthetic peptides from 120 variable regions and 90 sera from HCV-infected patients. Some regions from certain genotypes were less immunogenic, or even non-immunogenic, compared with their equivalents in other genotypes. However, the mean recognition of all peptides from genotypes 1a, 1b and 3 by sera infected with genotypes 1a, 1b and 3, respectively, showed no significant differences, suggesting a similar overall immunogenicity of variable regions from these genotypes. Proteins NS4a, NS4b and NS5a were found to be the most immunogenic. Recognition of individual peptides by the sera of infected patients showed that the humoral response against HCV is patient-dependent. The work shows that 15-mer peptides may encompass several B-cell epitopes. These epitopes may lie in slightly different positions in different genotypes. Thirty-one percent of the 543 peptides were recognized by some of the 35 healthy donors. This may be a reflection of the large number of antigens to which they had been exposed, but it may also reflect a strategy of HCV to respond to immune pressure. After selection and modification, a set of 40 peptides was used to assess genotypes 1a, 1b, 1, 2 and 3 in the sera of HCV-infected patients, with sensitivities of 34.1, 48.5, 68.8, 58.3 and 48.9% and specificities of 100, 99.1, 97.1, 99.5 and 99%, respectively. The overall sensitivity and specificity for the assessment of genotypes 1, 2 and 3 were 64 and 98%, respectively

Macrofaunal community structure and zonation of an Ecuadorian sandy beach (Bay of Valdivia)

The sandy beach macrofauna of the Bay of Valdivia (Ecuador) was sampled in August-September 1999 along six replicate transects between the high and low water line. The sediment consisted of well-sorted, fine to medium sand. Taking into account the dimensionless fall velocity (O) and the relative tidal range, the beach was characterized as an exposed, low tide terrace -rip beach. The distribution of the macrofauna was mainly determined by the elevation on the beach. Thirty-one taxa were found throughout the study, varying between 10 and 22 taxa per transect. Molluscs were the most dominant taxon (overall average: 285 ind/m2, max. : 2135 ind/m2), followed by crustaceans. The gastropod Olivella semistriata (overall average: 243 ind/m2, max. : 2131 ind/m2) was the most abundant species. The crustaceans were the most diverse taxon (10 spp.); Haustorius sp., Excirolana braziliensis and Emerita rathbunae were the most abundant species. Densities of polychaetes were low in comparison with the previous two taxa mentioned (overall average: 13 ind/m2). The total average density over the entire bay was 370 ind/m2. Three zones of macrofaunal distribution along the tidal gradient could be distinguished: an upper beach, a middle beach and a lower beach assemblage. The upper beach assemblage consisted mainly of Excirolana braziliensis and ghost crabs. The middle beach assemblage had highest macrofaunal densities and was dominated by Olivella semistriata andHaustorius sp. The most diverse assemblage was found on the low beach, with representatives of different taxa, but with lower densities. These results are in conformity with other studies along the Pacific coast of South America and fit into the zonation scheme of DAHL (1952). Given that many other studies from South America were done at temperate latitudes, we conclude that, although differences in species composition were found, the general pattern of macrobenthos zonation on sandy beaches is similar in tropical regions

High miR-26a and low CDC2 levels associate with decreased EZH2 expression and with favorable outcome on tamoxifen in metastatic breast cancer

For patients with metastatic breast cancer, we previously described that increased EZH2 expression levels were associated with an adverse outcome to tamoxifen therapy. Main objective of the p

Electronic structure and ferroelectricity in SrBi2Ta2O9

The electronic structure of SrBi2Ta2O9 is investigated from first-principles, within the local density approximation, using the full-potential linearized augmented plane wave (LAPW) method. The results show that, besides the large Ta(5d)-O(2p) hybridization which is a common feature of the ferroelectric perovskites, there is an important hybridization between bismuth and oxygen states. The underlying static potential for the ferroelectric distortion and the primary source for ferroelectricity is investigated by a lattice-dynamics study using the Frozen Phonon approach.Comment: 17 pages, 7 figures. Phys. Rev. B, in pres