Genetic study of atypical femoral fractures using exome sequencing in three affected sisters and three unrelated patients

Objectives: Atypical femoral fractures (AFF) are rare, often related to long-term bisphosphonate (BPs) tre- atment. Their pathogenic mechanisms are not precisely known and there is no evidence to identify patients with a high risk of AFF. The aim of this work is to study the genetic bases of AFFs. Material and methods: Whole-exome sequencing was carried out on 3 sisters and 3 unrelated additional patients, all treated with BPs for more than 5 years. Low frequency, potentially pathogenic variants sha- red by the 3 sisters, were selected, were selected and a network of gene and protein interactions was constructed with the data found. Results: We identified 37 rare variants (in 34 genes) shared by the 3 sisters, some not previously descri- bed. The most striking variant was the p.Asp188Tyr mutation in the enzyme geranylgeranyl pyrophos- phate synthase (encoded by the GGPS1 gene), from the mevalonate pathway and essential for osteoclast function. Another noteworthy finding was two mutations (one in the 3 sisters and one in an unrelated patient) in the CYP1A1 gene, involved in the metabolism of steroids. We identified other variants that could also be involved in the susceptibility to AFFs or in the underlying osteoporotic phenotype, such as those present in the SYDE2, NGEF, COG4 and FN1 genes. Conclusions: Our data are compatible with a model where the accumulation of susceptibility variants could participate in the genetic basis of AFFs

Effect of molybdophosphoric acid in iron and cobalt graphene/chitosan composites for oxygen reduction reaction

Iron and cobalt materials have attracted enormous interest as low-cost alternatives to noble-metal catalysts able to catalyse oxygen reduction reaction. Here, the effect of the heteropolyacid H3PMo12O40 (HPMo) into the structure of new composites formed by Fe, Co and reduced-graphene oxide/chitosan (rGOCS) has been investigated. Chitosan was used as a nitrogen precursor for nanocarbon, while reduced graphene oxide was introduced to tune the electrical conductivity. The physicochemical properties of electrocatalysts were performed by Raman, XRD, XPS and TEM. Activity toward ORR was carried out in a three-electrode electrochemical cell using a rotating disk electrode (RDE). The molybdophosphoric acid incorporation into the structure of Fe/rGOCS composites resulted in an increase of the activity of the oxygen reduction reaction in alkaline medium. Furthermore, the replacement of iron by cobalt yielded in a great improvement of the activity and stability, which may open new avenues for the design of nanomaterials utilizing HPMo/reduced-graphene oxide/chitosan composites.This work was supported by the Spanish Government under the MINECO projectENE2014-52158-C2-1R (co-funded by FEDER), Spanish National Research CouncilCOOPB20202 and MERC project721394002. M.R.A acknowledges the FPU-2012 program for financial support.Peer reviewe

Estudios funcionales de variantes de DKK1 presentes en la población general

Objetivo: En las últimas décadas se han identificado genes asociados a la masa ósea y al riesgo de fractura osteoporótica, varios de los cuales pertenecen a la vía de Wnt. En este proyecto se estudió la funcionalidad de 7 mutaciones de cambio de sentido del gen DKK1 –un inhibidor de la vía de Wnt– presentes en la población general. Material y métodos: Se realizaron estudios in vitro del gen reportero luciferasa para medir la actividad de la vía de Wnt en presencia o ausencia de DKK1 silvestre o mutada, y estudios de western blot, para evaluar si las distintas mutaciones afectan a su síntesis y/o a su estabilidad. Resultados: La proteína DKK1 con la variante p.Ala41Thr presenta menor actividad inhibidora de la vía en comparación con la proteína silvestre. También se observaron diferencias significativas entre los experimentos realizados en ausencia de DKK1 y los que incluyen DKK1 con la mutación p.Ala41Thr. Los western blots mostraron que la cantidad de proteína era similar para todas las variantes, tanto las mutadas como la silvestre, por lo que la pérdida de actividad de p.Ala41Thr no parecía deberse a falta de proteína. El resto de las mutaciones no presentaron un comportamiento diferente al de la proteína DKK1 silvestre. Conclusiones: La variante de cambio de sentido p.Ala41Thr de la proteína DKK1, con una frecuencia poblacional de 0,013%, presenta una pérdida parcial de su función inhibidora, que no es debida a la falta de expresión de ésta. Esta variante génica podría conllevar un aumento de la densidad mineral ósea en las personas de la población general portadoras de esta mutación

Identificación de variantes genéticas asociadas con la densidad mineral ósea (DMO) en el gen FLJ42280

FLJ42280 es un posible gen de susceptibilidad a la osteoporosis. Distintos estudios de GWAs han identificado 4 SNPs no-codificantes en este gen que se asocian a la densidad mineral ósea (DMO) y el riesgo de fractura. Para descubrir la causa de la asociación entre estos SNPs y la osteoporosis, se realizó una búsqueda de variantes genéticas mediante resecuenciación de 28 kb que contienen el gen, en una selección truncada de mujeres con DMO muy baja (n=50) o muy alta (n=50) de la cohorte BARCOS (Barcelona Cohorte Osteoporosis, cohorte de mujeres postmenopáusicas de Barcelona). Las variantes encontradas se filtraron y se analizó su frecuencia en cada grupo. Se analizó el solapamiento de las variantes con elementos funcionales del proyecto ENCODE y también se calculó el desequilibrio de ligamiento entre los SNPs de la región. Finalmente, se hizo un análisis de eQTL de los 4 SNPs no-codificantes respecto a los niveles de expresión de genes cercanos a FLJ42280 en linfoblastos. Se seleccionaron 110 variantes. Las diferencias de sus frecuencias entre los dos grupos estuvieron por debajo del poder estadístico del diseño experimental. Sin embargo, 3 variantes solaparon con posibles enhancers y una solapó con un enhancer activo en osteoblastos (rs4613908). Se observó un fuerte desequilibrio de ligamiento entre los 4 SNPs no-codificantes y el SNP rs4613908, que pertenecen a un bloque que abarca el gen casi por completo. Ninguno de los SNPs no-codificantes mostró asociación con los niveles de expresión de genes cercanos a FLJ42280. En conclusión, el SNP rs4613908 podría estar implicado funcionalmente en la determinación de la DMO. Serán necesarios experimentos concretos para confirmarlo

Identificación de variantes genéticas asociadas con la densidad mineral ósea (DMO) en el gen FLJ42280

FLJ42280 is a possible gene for susceptibility to osteoporosis. Different studies of GWAs have identified 4 non-coding SNPs in this gene associated with bone mineral density (BMD) and fracture risk. In order to ascertain the cause of the association between these SNPs and osteoporosis, we searched for genetic variants by resequencing the 28-kb gene, in a truncated selection of women with very low (n=50) or very high BMD (N=50) of the BARCOS cohort (Barcelona Cohort Osteoporosis, cohort of postmenopausal women in Barcelona). The variants found were filtered and their frequency analyzed in each group. The overlap of the variants with functional elements of the ENCODE project was calculated. Finally, an eQTL analysis of the 4 SNPs-coding was performed on the expression levels of FLJ42280 neighbor genes in lymphoblasts. In all, 110 variants were selected. The differences in their frequencies between the two groups were below the statistical power of the experimental design. However, three variants overlapped with possible enhancers and one overlapped with an active enhancer in osteoblasts (rs4613908). A strong linkage disequilibrium was observed between the 4 non-coding SNPs and the SNP rs4613908, which belong to a block spanning the gene almost completely. None of the non-coding SNPs showed association with the expression levels of FLJ42280 neighbor genes. In conclusion, the SNP rs4613908 couldFLJ42280 es un posible gen de susceptibilidad a la osteoporosis. Distintos estudios de GWAs han identificado 4 SNPs no-codificantes en este gen que se asocian a la densidad mineral ósea (DMO) y el riesgo de fractura. Para descubrir la causa de la asociación entre estos SNPs y la osteoporosis, se realizó una búsqueda de variantes genéticas mediante resecuenciación de 28 kb que contienen el gen, en una selección truncada de mujeres con DMO muy baja (n=50) o muy alta (n=50) de la cohorte BARCOS (Barcelona Cohorte Osteoporosis, cohorte de mujeres postmenopáusicas de Barcelona). Las variantes encontradas se filtraron y se analizó su frecuencia en cada grupo. Se analizó el solapamiento de las variantes con elementos funcionales del proyecto ENCODE y también se calculó el desequilibrio de ligamiento entre los SNPs de la región. Finalmente, se hizo un análisis de eQTL de los 4 SNPs no-codificantes respecto a los niveles de expresión de genes cercanos a FLJ42280 en linfoblastos. Se seleccionaron 110 variantes. Las diferencias de sus frecuencias entre los dos grupos estuvieron por debajo del poder estadístico del diseño experimental. Sin embargo, 3 variantes solaparon con posibles enhancers y una solapó con un enhancer activo en osteoblastos (rs4613908). Se observó un fuerte desequilibrio de ligamiento entre los 4 SNPs no-codificantes y el SNP rs4613908, que pertenecen a un bloque que abarca el gen casi por completo. Ninguno de los SNPs no-codificantes mostró asociación con los niveles de expresión de genes cercanos a FLJ42280. En conclusión, el SNP rs4613908 podría estar implicado funcionalmente en la determinación de la DMO. Serán necesarios experimentos concretos para confirmarlo

Estudio genético de la fractura femoral atípica mediante la secuenciación del exoma en tres hermanas afectas y tres pacientes no relacionadas

Objetivos: Las fracturas atípicas de fémur (FAF) son un tipo de fracturas poco frecuentes, a menudo relacionadas con un tratamiento prolongado con bisfosfonatos (BPs). Actualmente no se conocen con exactitud sus mecanismos patogénicos y no hay pruebas para identificar aquellos pacientes con un alto riesgo de sufrir una FAF. El objetivo de este trabajo es investigar las bases genéticas de las FAFs. Material y métodos: Se secuenció el exoma completo de 3 hermanas y de 3 pacientes adicionales no relacionadas, todas tratadas con BPs durante más de 5 años. Se seleccionaron variantes compartidas por las hermanas, de baja frecuencia y potencialmente patogénicas, y se construyó una red de interacciones de genes y proteínas con los datos hallados. Resultados: Identificamos 37 variantes raras (en 34 genes) compartidas por las 3 hermanas, algunas de ellas no descritas anteriormente. La variante más llamativa fue la mutación p.Asp188Tyr en el enzima geranilgeranil pirofosfato sintasa (codificada por el gen GGPS1), de la vía del mevalonato y esencial para la función del osteoclasto. Otro hallazgo interesante fueron dos mutaciones (una en las 3 hermanas y una en una paciente no relacionada) en el gen CYP1A1, implicado en el metabolismo de los esteroides. Identificamos otras variantes que también podrían estar involucradas en la susceptibilidad a las FAFs o en el fenotipo osteoporótico subyacente, tales como las presentes en los genes SYDE2, NGEF, COG4 y la FN1. Conclusiones: Nuestros datos son compatibles con un modelo donde la acumulación de variantes de susceptibilidad podría participar en la base genética de las FAFs

Genetic study of atypical femoral fractures using exome sequencing in three affected sisters and three unrelated patients

Objectives: Atypical femoral fractures (AFF) are rare, often related to long-term bisphosphonate (BPs) treatment. Their pathogenic mechanisms are not precisely known and there is no evidence to identify patients with a high risk of AFF. The aim of this work is to study the genetic bases of AFFs. Material and methods: Whole-exome sequencing was carried out on 3 sisters and 3 unrelated additional patients, all treated with BPs for more than 5 years. Low frequency, potentially pathogenic variants shared by the 3 sisters, were selected, were selected and a network of gene and protein interactions was constructed with the data found. Results: We identified 37 rare variants (in 34 genes) shared by the 3 sisters, some not previously described. The most striking variant was the p.Asp188Tyr mutation in the enzyme geranylgeranyl pyrophos-phate synthase (encoded by the GGPS1 gene), from the mevalonate pathway and essential for osteoclast function. Another noteworthy finding was two mutations (one in the 3 sisters and one in an unrelated patient) in the CYP1A1 gene, involved in the metabolism of steroids. We identified other variants that could also be involved in the susceptibility to AFFs or in the underlying osteoporotic phenotype, such as those present in the SYDE2, NGEF, COG4 and FN1 genes. Conclusions: Our data are compatible with a model where the accumulation of susceptibility variants could participate in the genetic basis of AFFs

Genetic study of atypical femoral fractures using exome sequencing in three affected sisters and three unrelated patients

Objectives: Atypical femoral fractures (AFF) are rare, often related to long-term bisphosphonate (BPs) treatment. Their pathogenic mechanisms are not precisely known and there is no evidence to identify patients with a high risk of AFF. The aim of this work is to study the genetic bases of AFFs. Material and methods: Whole-exome sequencing was carried out on 3 sisters and 3 unrelated additional patients, all treated with BPs for more than 5 years. Low frequency, potentially pathogenic variants shared by the 3 sisters, were selected, were selected and a network of gene and protein interactions was constructed with the data found. Results: We identified 37 rare variants (in 34 genes) shared by the 3 sisters, some not previously described. The most striking variant was the p.Asp188Tyr mutation in the enzyme geranylgeranyl pyrophos-phate synthase (encoded by the GGPS1 gene), from the mevalonate pathway and essential for osteoclast function. Another noteworthy finding was two mutations (one in the 3 sisters and one in an unrelated patient) in the CYP1A1 gene, involved in the metabolism of steroids. We identified other variants that could also be involved in the susceptibility to AFFs or in the underlying osteoporotic phenotype, such as those present in the SYDE2, NGEF, COG4 and FN1 genes. Conclusions: Our data are compatible with a model where the accumulation of susceptibility variants could participate in the genetic basis of AFFs

Common and rare variants of WNT16, DKK1 and SOST and their relationship with bone mineral density

Numerous GWAS and candidate gene studies have highlighted the role of the Wnt pathway in bone biology. Our objective has been to study in detail the allelic architecture of three Wnt pathway genes: WNT16, DKK1 and SOST, in the context of osteoporosis. We have resequenced the coding and some regulatory regions of these three genes in two groups with extreme bone mineral density (BMD) (n=∼50, each) from the BARCOS cohort. No interesting novel variants were identifed. Thirteen predicted functional variants have been genotyped in the full cohort (n=1490), and for ten of them (with MAF>0.01), the association with BMD has been studied. We have found six variants nominally associated with BMD, of which 2 WNT16 variants predicted to be eQTLs for FAM3C (rs55710688, in the Kozak sequence and rs142005327, within a putative enhancer) withstood multiple-testing correction. In addition, two rare variants in functional regions (rs190011371 in WNT16b 3′UTR and rs570754792 in the SOST TATA box) were found only present in three women each, all with BMD below the mean of the cohort. Our results reinforce the higher importance of regulatory versus coding variants in these Wnt pathway genes and open new ways for functional studies of the relevant variants