A new classification and linear sequence of extant gymnosperms

A new classification and linear sequence of the gymnosperms based on previous molecular and morphological phylogenetic and other studies is presented. Currently accepted genera are listed for each family and arranged according to their (probable) phylogenetic position. A full synonymy is provided, and types are listed for accepted genera. An index to genera assists in easy access to synonymy and family placement of genera.Peer reviewe

Magnetic excitations in a new anisotropic Kagom\'{e} antiferromagnet

The Nd-langasite compound contains planes of magnetic Nd3+ ions on a lattice topologically equivalent to a kagom\'{e} net. The magnetic susceptibility does not reveal any signature of long-range ordering down to 2 K but rather a correlated paramagnetism with significant antiferromagnetic interactions between the Nd and a single-ion anisotropy due to crystal field effect. Inelastic neutron scattering on Nd-langasite powder and single-crystal allowed to probe its very peculiar low temperature dynamical magnetic correlations. They present unusual dispersive features and are broadly localized in wave-vector Q revealing a structure factor associated to characteristics short range-correlations between the magnetic atoms. From comparison with theoretical calculations, these results are interpreted as a possible experimental observation of a spin liquid state in an anisotropic kagom\'{e} antiferromagnet.Comment: to appear in Physica

Validations of the names of seven Podocarpaceae macrofossils

Seven names of macrofossil taxa belonging to Podocarpaceae are here validated; they were all previously published but not validly so under the International Code of Botanical Nomenclature. The names apply to species in the genera Acmopyle Pilg. [A. setiger (Townrow) R. S. Hill & R. J. Carp. ex R. R. Mill & R. S. Hill], Dacrycarpus (Endl.) de Laub. [D. praecupressinus (Ettingsh.) D. R. Greenw. ex R. R. Mill & R. S. Hill], Falcatifolium de Laub. [F. eocenicum (D. R. Greenw.) R. S. Hill & L. J. Scriven ex R. R. Mill & R. S. Hill], Prumnopitys Phil. [P. tasmanica (Townrow) D. R. Greenw. ex R. R. Mill & R. S. Hill], Sigmaphyllum R. S. Hill & L. J. Scriven [S. australe (D. R. Greenw.) R. S. Hill & L. J. Scriven ex R. R. Mill & R. S. Hill], Smithtonia R. S. Hill & M. Pole [S. lanceolata (D. R. Greenw.) R. S. Hill & M. Pole ex R. R. Mill & R. S. Hill] and Willungia R. S. Hill & M. Pole [W. maslinensis (D. T. Blackburn) R. S. Hill & M. Pole ex R. R. Mill & R. S. Hill]. All these combinations were originally published without exact basionym references; instead, the authors cited the complete pagination of the paper in which the intended basionym was made.Robert R. Mill and Robert S. Hil

Evaluation of nanopore sequencing for epigenetic epidemiology: a comparison with DNA methylation microarrays

Most epigenetic epidemiology to date has utilized microarrays to identify positions in the genome where variation in DNA methylation is associated with environmental exposures or disease. However, these profile less than 3% of DNA methylation sites in the human genome, potentially missing affected loci and preventing the discovery of disrupted biological pathways. Third generation sequencing technologies, including Nanopore sequencing, have the potential to revolutionise the generation of epigenetic data, not only by providing genuine genome-wide coverage but profiling epigenetic modifications direct from native DNA. Here we assess the viability of using Nanopore sequencing for epidemiology by performing a comparison with DNA methylation quantified using the most comprehensive microarray available, the Illumina EPIC array. We implemented a CRISPR-Cas9 targeted sequencing approach in concert with Nanopore sequencing to profile DNA methylation in three genomic regions to attempt to rediscover genomic positions that existing technologies have shown are differentially methylated in tobacco smokers. Using Nanopore sequencing reads, DNA methylation was quantified at 1779 CpGs across three regions, providing a finer resolution of DNA methylation patterns compared to the EPIC array. The correlation of estimated levels of DNA methylation between platforms was high. Furthermore, we identified 12 CpGs where hypomethylation was significantly associated with smoking status, including 10 within the AHRR gene. In summary, Nanopore sequencing is a valid option for identifying genomic loci where large differences in DNAm are associated with a phenotype and has the potential to advance our understanding of the role differential methylation plays in the aetiology of complex disease

John Stuart Mill and Fourierism: ‘association’, ‘friendly rivalry’ and distributive justice

John Stuart Mill’s self-description as ‘under the general designation of Socialist’ has been under-explored. It is an important feature of something else often overlooked: the importance of the French context of Mill’s thought. This article focuses on the role of Fourierism in the development of Mill’s ideas, exploring the links to Fourierism in Mill’s writing on profit-sharing; his use of the words ‘association’ and ‘friendly rivalry’; and his views concerning distributive justice. It then reconsiders his assessment of Fourierism as a desirable, workable and immediately implementable form of social reform, ultimately arguing it was Mill’s most-preferred form of ‘utopian’ socialism

Evaluation of nanopore sequencing for epigenetic epidemiology: a comparison with DNA methylation microarrays

Most epigenetic epidemiology to date has utilized microarrays to identify positions in the genome where variation in DNA methylation is associated with environmental exposures or disease. However, these profile less than 3% of DNA methylation sites in the human genome, potentially missing affected loci and preventing the discovery of disrupted biological pathways. Third generation sequencing technologies, including Nanopore sequencing, have the potential to revolutionise the generation of epigenetic data, not only by providing genuine genome-wide coverage but profiling epigenetic modifications direct from native DNA. Here we assess the viability of using Nanopore sequencing for epidemiology by performing a comparison with DNA methylation quantified using the most comprehensive microarray available, the Illumina EPIC array. We implemented a CRISPR-Cas9 targeted sequencing approach in concert with Nanopore sequencing to profile DNA methylation in three genomic regions to attempt to rediscover genomic positions that existing technologies have shown are differentially methylated in tobacco smokers. Using Nanopore sequencing reads, DNA methylation was quantified at 1779 CpGs across three regions, providing a finer resolution of DNA methylation patterns compared to the EPIC array. The correlation of estimated levels of DNA methylation between platforms was high. Furthermore, we identified 12 CpGs where hypomethylation was significantly associated with smoking status, including 10 within the AHRR gene. In summary, Nanopore sequencing is a valid option for identifying genomic loci where large differences in DNAm are associated with a phenotype and has the potential to advance our understanding of the role differential methylation plays in the aetiology of complex disease

A Neurocomputational Model of Stimulus-Specific Adaptation to Oddball and Markov Sequences

Stimulus-specific adaptation (SSA) occurs when the spike rate of a neuron decreases with repetitions of the same stimulus, but recovers when a different stimulus is presented. It has been suggested that SSA in single auditory neurons may provide information to change detection mechanisms evident at other scales (e.g., mismatch negativity in the event related potential), and participate in the control of attention and the formation of auditory streams. This article presents a spiking-neuron model that accounts for SSA in terms of the convergence of depressing synapses that convey feature-specific inputs. The model is anatomically plausible, comprising just a few homogeneously connected populations, and does not require organised feature maps. The model is calibrated to match the SSA measured in the cortex of the awake rat, as reported in one study. The effect of frequency separation, deviant probability, repetition rate and duration upon SSA are investigated. With the same parameter set, the model generates responses consistent with a wide range of published data obtained in other auditory regions using other stimulus configurations, such as block, sequential and random stimuli. A new stimulus paradigm is introduced, which generalises the oddball concept to Markov chains, allowing the experimenter to vary the tone probabilities and the rate of switching independently. The model predicts greater SSA for higher rates of switching. Finally, the issue of whether rarity or novelty elicits SSA is addressed by comparing the responses of the model to deviants in the context of a sequence of a single standard or many standards. The results support the view that synaptic adaptation alone can explain almost all aspects of SSA reported to date, including its purported novelty component, and that non-trivial networks of depressing synapses can intensify this novelty response

A Reply to My Critics

In this paper, I respond to three commentators on my book Understanding Moral Obligation: Kant, Hegel Kierkegaard. Anne Margaret Baxley focuses on my treatment of Kant, Dean Moyar on my treatment of Hegel, and William Bristow on my treatment of Kierkegaard. In this reply, I try to show how the critical points that they raise can be addresse