Diagnosis of physical and biological control over phytoplankton in the Gulf of Maine-Georges Bank region using an adjoint data assimilation approach

The linkage between physical and biological processes, particularly the effect of the circulation field on the distribution of phytoplankton, is studied by applying a two-dimensional model and an adjoint data assimilation approach to the Gulf of Maine-Georges Bank region. The model results, comparing well with observation data, reveal seasonal and geographic variations of phytoplankton concentration and verify that the seasonal cycles of phytoplankton are controlled by both biological sources and advection processes which are functions of space and time and counterbalance each other. Although advective flux divergences have greater magnitudes on Georges Bank than in the coastal region of the western Gulf of Maine, advection control over phytoplankton concentration is more significant in the coastal region of the western Gulf of Maine. The model results also suggest that the two separated populations in the coastal regions of the western Gulf of Maine and on Georges Bank are self-sustaining.Shandong Sheng (China) (Shandong Young and Middle-Aged Scientists Research Award, grant BS2011HZ021

The seasonal variation of the upper layers of the South China Sea (SCS) circulation and the Indonesian through flow (ITF): An ocean model study

The upper layer, wind-driven circulation of the South China Sea (SCS), its through-flow (SCSTF) and the Indonesian through flow (ITF) are simulated using a high resolution model, FVCOM (finite volume coastal ocean model) in a regional domain comprising the Maritime Continent. The regional model is embedded in the MIT global ocean general circulation model (ogcm) which provides surface forcing and boundary conditions of all the oceanographic variables at the lateral open boundaries in the Pacific and Indian oceans. A five decade long simulation is available from the MITgcm and we choose to investigate and compare the climatologies of two decades, 1960–1969 and 1990–1999. The seasonal variability of the wind-driven circulation produced by the monsoon system is realistically simulated. In the SCS the dominant driving force is the monsoon wind and the surface circulation reverses accordingly, with a net cyclonic tendency in winter and anticyclonic in summer. The SCS circulation in the 90s is weaker than in the 60s because of the weaker monsoon system in the 90s. In the upper 50 m the interaction between the SCSTF and ITF is very important. The southward ITF can be blocked by the SCSTF at the Makassar Strait during winter. In summer, part of the ITF feeds the SCSTF flowing into the SCS through the Karimata Strait. Differently from the SCS, the ITF is primarily controlled by the sea level difference between the western Pacific and eastern Indian Ocean. The ITF flow, consistently southwestward below the surface layer, is stronger in the 90s. The volume transports for winter, summer and yearly are estimated from the simulation through all the interocean straits. On the annual average, there is a ∼5.6 Sv of western Pacific water entering the SCS through the Luzon Strait and ∼1.4 Sv exiting through the Karimata Strait into the Java Sea. Also, ∼2 Sv of SCS water enters the Sulu Sea through the Mindoro Strait, while ∼2.9 Sv flow southwards through the Sibutu Strait merging into the ITF. The ITF inflow occurs through the Makassar Strait (up to ∼62%) and the Lifamatola Strait (∼38%). The annual average volume transport of the ITF inflow from the simulation is ∼15 Sv in the 60s and ∼16.6 Sv in the 90s, very close to the long term observations. The ITF outflow through the Lombok, Ombai and Timor straits is ∼16.8 Sv in the 60s and 18.9 Sv in the 90s, with the outflow greater by 1.7 Sv and 2.3 Sv respectively. The transport estimates of the simulation at all the straits are in rather good agreement with the observational estimates. We analyze the thermal structure of the domain in the 60s and 90s and assess the simulated temperature patterns against the SODA reanalysis product, with special focus on the shallow region of the SCS. The SODA dataset clearly shows that the yearly averaged temperatures of the 90s are overall warmer than those of the 60s in the surface, intermediate and some of the deep layers and the decadal differences (90s − 60s) indicate that the overall warming of the SCS interior is a local effect. In the simulation the warm trend from the 60s to the 90s in well reproduced in the surface layer. In particular, the simulated temperature profiles at two shallow sites at midway in the SCSTF agree rather well with the SODA profiles. However, the warming trend in the intermediate (deep) layers is not reproduced in the simulation. We find that this deficiency is mostly due to a deficiency in the initial temperature fields provide by the MITgcm.Singapore. National Research Foundation (Singapore-MIT Alliance for Research and Technology Center. Center of Environment Sensing and Modeling Program

Diagnosis of physical and biological controls on phytoplankton distribution in the Sargasso Sea

The linkage between physical and biological processes is studied by applying a one-dimensional physical-biological coupled model to the Sargasso Sea. The physical model is the Princeton Ocean Model and the biological model is a five-component system including phytoplankton, zooplankton, nitrate, ammonium, and detritus. The coupling between the physical and biological model is accomplished through vertical mixing which is parameterized by the level 2.5 Mellor and Yamada turbulence closure scheme. The coupled model investigates the annual cycle of ecosystem production and the response to external forcing, such as heat flux, wind stress, and surface salinity, and the relative importance of physical processes in affecting the ecosystem. Sensitivity experiments are also carried out, which provide information on how the model bio-chemical parameters affect the biological system. The computed seasonal cycles compare reasonably well with the observations of the Bermuda Atlantic Time-series Study (BATS). The spring bloom of phytoplankton occurs in March and April, right after the weakening of the winter mixing and before the establishment of the summer stratification. The bloom of zooplankton occurs about two weeks after the bloom of phytoplankton. The sensitivity experiments show that zooplankton is more sensitive to the variations of biochemical parameters than phytoplankton.Shandong Sheng (China) (Shandong Young Scientists Research Award, grant BS2011HZ021

Towards a service-oriented e-infrastructure for multidisciplinary environmental research

Research e-infrastructures are considered to have generic and thematic parts. The generic part provids high-speed networks, grid (large-scale distributed computing) and database systems (digital repositories and data transfer systems) applicable to all research commnities irrespective of discipline. Thematic parts are specific deployments of e-infrastructures to support diverse virtual research communities. The needs of a virtual community of multidisciplinary envronmental researchers are yet to be investigated. We envisage and argue for an e-infrastructure that will enable environmental researchers to develop environmental models and software entirely out of existing components through loose coupling of diverse digital resources based on the service-oriented achitecture. We discuss four specific aspects for consideration for a future e-infrastructure: 1) provision of digital resources (data, models & tools) as web services, 2) dealing with stateless and non-transactional nature of web services using workflow management systems, 3) enabling web servce discovery, composition and orchestration through semantic registries, and 4) creating synergy with existing grid infrastructures

Memory-based immigrants for ant colony optimization in changing environments

Copyright @ 2011 SpringerAnt colony optimization (ACO) algorithms have proved that they can adapt to dynamic optimization problems (DOPs) when they are enhanced to maintain diversity. DOPs are important due to their similarities to many real-world applications. Several approaches have been integrated with ACO to improve their performance in DOPs, where memory-based approaches and immigrants schemes have shown good results on different variations of the dynamic travelling salesman problem (DTSP). In this paper, we consider a novel variation of DTSP where traffic jams occur in a cyclic pattern. This means that old environments will re-appear in the future. A hybrid method that combines memory and immigrants schemes is proposed into ACO to address this kind of DTSPs. The memory-based approach is useful to directly move the population to promising areas in the new environment by using solutions stored in the memory. The immigrants scheme is useful to maintain the diversity within the population. The experimental results based on different test cases of the DTSP show that the memory based immigrants scheme enhances the performance of ACO in cyclic dynamic environments.This work was supported by the Engineering and Physical Sciences Research Council (EPSRC) of UK under Grant EP/E060722/2

Portraying the life cycle of ideas in social psychology through functional (textual) data analysis: a toolkit for digital history

This paper presents a method for the digital history of a discipline (social psychology in this application) through the analysis of scientific publications. The titles of a comprehensive set of papers published in the Journal of Personality and Social Psychology (1965–2021) were collected, yielding a total of 10,222 items. The corpus thus constructed underwent several stages of preprocessing until the final conversion into a terms x time-points matrix, where terms are stemmed words and multi-words. After normalizing frequencies via a chi square-like transformation, clusters of words portraying similar temporal patterns were identified by functional (textual) data analysis and distance-based curve clustering. Among the best candidates in terms of the number of clusters, the solutions with six, nine and thirteen clusters (from lower to higher resolution) have been chosen and the nesting relationship demonstrated. They reveal—at different levels of granularity—increasing, decreasing, and stable keywords trends, highlighting methods, theories, and application domains that have become more popular in recent years, lost popularity, or have remained in common use. Moreover, this method allows to highlight historical issues (such as crises in the discipline or debates over the use of terms). The results highlight the core topics of social psychology in the past and today, underlying the crucial contribution of this method for the digital history of a discipline

Regime shift of the South China Sea SST in the late 1990s

Decadal variability of the South China Sea (SCS) sea surface temperature (SST) during 1982–2014 is investigated using observations and ocean reanalysis datasets. The SCS SST shows an abrupt transition from a cold-to-warm regime in the late 1990s. Based on the long-term SST variability two epochs are defined, 1982–1996 and 2000–2014 as cold and warm regimes respectively, spanning on either side of the 1997–1999 SCS warming. Despite the occurrence of strong El Nino induced warming events, the SST anomalies tend to be negative in the cold regime. Conversely during the warm regime, the positive SST anomalies have dominated over the La Nina driven cooling events. The cold (warm) SST regime is marked by net heat gain (loss) by the SCS. The long-term variations of net surface heat flux are mainly driven by the latent heat flux anomalies while the short wave flux plays a secondary role. Low-frequency variability of the South China Sea throughflow (SCSTF) appears to be closely related to the SCS SST regime shift. The SCSTF shows reversing trends during the cold and warm epochs. The weakened SCSTF in the warm regime has promoted the SCS warming by limiting the outward flow of warm water from the SCS. Meanwhile, enhanced SCSTF during the cold regime acts as a cooling mechanism and lead to persistent negative SST anomalies. The change in trend of the SCSTF and SST regime shift coincides with the switching of pacific decadal oscillation from a warm to cold phase in the late 1990s.Singapore. National Research Foundation (Singapore MIT Alliance for Research and Technology’s Centre for Environmental Sensing and Modeling interdisciplinary research program

Box modeling of the Eastern Mediterranean sea

In ∼1990 a new source of deep water formation in the Eastern Mediterranean was found in the southern part of the Aegean sea. Till then, the only source of deep water formation in the Eastern Mediterranean was in the Adriatic sea; the rate of the deep water formation of the new Aegean source is 1 Sv, three times larger than the Adriatic source. We develop a simple three-box model to study the stability of the thermohaline circulation of the Eastern Mediterranean sea. The three boxes represent the Adriatic sea, Aegean sea, and the Ionian seas. The boxes exchange heat and salinity and may be described by a set of nonlinear differential equations. We analyze these equations and find that the system may have one, two, or four stable flux states. We conjecture that the change in the deep water formation in the Eastern Mediterranean sea is attributed to a switch between the different states on the thermohaline circulation; this switch may result from decreased temperature and/or increased salinity over the Aegean sea