Multiparton Interactions with an x-dependent Proton Size

Theoretical arguments, supported by other indirect evidence, suggest that the wave function of high-x partons should be narrower than that of low-x ones. In this article, we present a modification to the variable impact parameter framework of Pythia 8 to model this effect. In particular, a Gaussian hadronic matter profile is introduced, with a width dependent on the x value of the constituent being probed. Results are compared against the default single- and double-Gaussian profiles, as well as an intermediate overlap function

Multiparton Interactions and Rescattering

The concept of multiple partonic interactions in hadronic events is vital for the understanding of both minimum-bias and underlying-event physics. The area is rather little studied, however, and current models offer a far from complete coverage, even of the effects we know ought to be there. In this article we address one such topic, namely that of rescattering, where an already scattered parton is allowed to take part in another subsequent scattering. A framework for rescattering is introduced for the Pythia 8 event generator and fully integrated with normal multiparton interactions and initial- and final-state radiation. Using this model, the effects on event structure are studied, and distributions are shown both for minimum-bias and jet events

Video Rate Visual Servoing for Robots

This paper presents some preliminary experimental results in robotic visual servoing, utilizing a newly available hardware region-growing and moment-generation unit. A Unix-based workstation in conjunction with special purpose video processing hardware has been used to visually close the robot position loop at video field rate, 60Hz. The architecture and capabilities of the system are discussed. Performance of the closed-loop position control is investigated analytically and via step response tests, and experimental results are presented. Initial results are for 2 dimensional servoing, but extensions to 3 dimensional positioning are covered along with methods for monocular distance determination. Finally some limitations of the approach and areas for further work are covered

Methods and Apparatus for Pulsed-DC Dielectric Barrier Discharge Plasma Actuator and Circuit

A plasma generating device intended to induce a flow in a fluid via plasma generation includes a dielectric separating two electrodes and a power supply. The first electrode is exposed to a fluid flow while the second electrode is positioned under the dielectric. The power supply is electrically coupled to a switch and the first and second electrodes. When the power supply is energized by repeated action of the switch, it causes a pulsed DC current between the electrodes which causes the fluid to ionize generating a plasma. The generation of the plasma induces a force with a velocity component in the fluid

A Distributed System for Robot Manipulator Control, NSF Grant ECS-11879 Fourth Report

This is the fourth annual report representing our last year\u27s work under the current grant. This work was directed to the development of a distributed computer architecture to function as a force and motion server to a robot system. In the course of this work we developed a compliant contact sensor to provide for transitions between position and force control; developed an end-effector capable of securing a stable grasp on an object and a theory of grasping; developed and built a controller which minimizes control delays; explored a parallel kinematics algorithms for the controller; developed a consistent approach to the definition of motion both in joint coordinates and in Cartesian coordinates; developed a symbolic simplification software package to generate the dynamics equations of a manipulator such that the calculations may be split between background and foreground

Determining phenological patterns associated with the onset of senescence in a wheat MAGIC mapping population

The appropriate timing of developmental transitions is critical for adapting many crops to their local climatic conditions. Therefore, understanding the genetic basis of different aspects of phenology could be useful in highlighting mechanisms underpinning adaptation, with implications in breeding for climate change. For bread wheat (Triticum aestivum), the transition from vegetative to reproductive growth, the start and rate of leaf senescence and the relative timing of different stages of flowering and grain filling all contribute to plant performance. In this study we screened under Smart house conditions a large, multi-founder “NIAB elite MAGIC” wheat population, to evaluate the genetic elements that influence the timing of developmental stages in European elite varieties. This panel of recombinant inbred lines was derived from eight parents that are or recently have been grown commercially in the UK and Northern Europe. We undertook a detailed temporal phenotypic analysis under Smart house conditions of the population and its parents, to try to identify known or novel Quantitative Trait Loci associated with variation in the timing of key phenological stages in senescence. This analysis resulted in the detection of QTL interactions with novel traits such the time between “half of ear emergence above flag leaf ligule” and the onset of senescence at the flag leaf as well as traits associated with plant morphology such as stem height. In addition, strong correlations between several traits and the onset of senescence of the flag leaf were identified. This work establishes the value of systematically phenotyping genetically unstructured populations to reveal the genetic architecture underlying morphological variation in commercial wheat

Functional mapping of quantitative trait loci (QTLs) associated with plant performance in a wheat MAGIC mapping population

In crop genetic studies, the mapping of longitudinal data describing the spatio-temporal nature of agronomic traits can elucidate the factors influencing their formation and development. Here, we combine the mapping power and precision of a MAGIC wheat population with robust computational methods to track the spatio- temporal dynamics of traits associated with wheat performance. NIAB MAGIC lines were phenotyped throughout their lifecycle under smart house conditions. Growth models were fitted to the data describing growth trajectories of plant area, height, water use and senescence and fitted parameters were mapped as quantitative traits. Trait data from single time points were also mapped to determine when and how markers became and ceased to be significant. Assessment of temporal dynamics allowed the identification of marker-trait associations and tracking of trait development against the genetic contribution of key markers. We establish a data-driven approach for understanding complex agronomic traits and accelerate research in plant breeding

Limited haplotype diversity underlies polygenic trait architecture across 70 years of wheat breeding

Background Selection has dramatically shaped genetic and phenotypic variation in bread wheat. We can assess the genomic basis of historical phenotypic changes, and the potential for future improvement, using experimental populations that attempt to undo selection through the randomizing effects of recombination. Results We bred the NIAB Diverse MAGIC multi-parent population comprising over 500 recombinant inbred lines, descended from sixteen historical UK bread wheat varieties released between 1935 and 2004. We sequence the founders’ genes and promoters by capture, and the MAGIC population by low-coverage whole-genome sequencing. We impute 1.1 M high-quality SNPs that are over 99% concordant with array genotypes. Imputation accuracy only marginally improves when including the founders’ genomes as a haplotype reference panel. Despite capturing 73% of global wheat genetic polymorphism, 83% of genes cluster into no more than three haplotypes. We phenotype 47 agronomic traits over 2 years and map 136 genome-wide significant associations, concentrated at 42 genetic loci with large and often pleiotropic effects. Around half of these overlap known quantitative trait loci. Most traits exhibit extensive polygenicity, as revealed by multi-locus shrinkage modelling. Conclusions Our results are consistent with a gene pool of low haplotypic diversity, containing few novel loci of large effect. Most past, and projected future, phenotypic changes arising from existing variation involve fine-scale shuffling of a few haplotypes to recombine dozens of polygenic alleles of small effect. Moreover, extensive pleiotropy means selection on one trait will have unintended consequences, exemplified by the negative trade-off between yield and protein content, unless selection and recombination can break unfavorable trait-trait associations

An Introduction to PYTHIA 8.2

The PYTHIA program is a standard tool for the generation of events in high-energy collisions, comprising a coherent set of physics models for the evolution from a few-body hard process to a complex multiparticle final state. It contains a library of hard processes, models for initial- and final-state parton showers, matching and merging methods between hard processes and parton showers, multiparton interactions, beam remnants, string fragmentation and particle decays. It also has a set of utilities and several interfaces to external programs. PYTHIA 8.2 is the second main release after the complete rewrite from Fortran to C++, and now has reached such a maturity that it offers a complete replacement for most applications, notably for LHC physics studies. The many new features should allow an improved description of data.Comment: 45 page