7 research outputs found
Integrated design of MEMS
Is a zip archive containing a tab-delimited table of all 3.8 million predicted fusions. (TXT 494892 kb
Additional file 1: of Systematic identification and analysis of frequent gene fusion events in metabolic pathways
Is an excel file containing Supplemental Tables S1-S16. (XLSX 11230 kb
The DOE Systems Biology Knowledgebase (KBase)
The U.S. Department of Energy Systems Biology Knowledgebase (KBase) is an open-source software and data platform designed to meet the grand challenge of systems biology — predicting and designing biological function from the biomolecular (small scale) to the ecological (large scale). KBase is available for anyone to use, and enables researchers to collaboratively generate, test, compare, and share hypotheses about biological functions; perform large-scale analyses on scalable computing infrastructure; and combine experimental evidence and conclusions that lead to accurate models of plant and microbial physiology and community dynamics. The KBase platform has (1) extensible analytical capabilities that currently include genome assembly, annotation, ontology assignment, comparative genomics, transcriptomics, and metabolic modeling; (2) a web-browser-based user interface that supports building, sharing, and publishing reproducible and well-annotated analyses with integrated data; (3) access to extensive computational resources; and (4) a software development kit allowing the community to add functionality to the system
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