Analysis of intact prophages in genomes of Paenibacillus larvae: An important pathogen for bees

Paenibacillus larvae is the etiological agent of American Foulbrood (AFB), a highly contagious and worldwide spread bacterial disease that affects honeybee brood. In this study, all complete P. larvae genomes available on the NCBI database were analyzed in order to detect presence of prophages using the PHASTER software. A total of 55 intact prophages were identified in 11 P. larvae genomes (5.0 +/- 2.3 per genome) and were further investigated for the presence of genes encoding relevant traits related to P. larvae. A closer look at the prophage genomes revealed the presence of several putative genes such as metabolic and antimicrobial resistance genes, toxins or bacteriocins, potentially influencing host performance. Some of the coding DNA sequences (CDS) were present in all ERIC-genotypes, while others were only found in a specific genotype. While CDS encoding toxins and antitoxins such as HicB and MazE were found in prophages of all bacterial genotypes, others, from the same category, were provided by prophages particularly to ERIC I (enhancin-like toxin), ERIC II (antitoxin SocA) and ERIC V strains (subunit of Panton-Valentine leukocidin system (PVL) LukF-PV). This is the first in-depth analysis of P. larvae prophages. It provides better knowledge on their impact in the evolution of virulence and fitness of P. larvae, by discovering new features assigned by the viruses

Analysis of intact prophages in genomes of paenibacillus larvae, an important pathogen for bees

Paenibacillus larvae is a highly contagious spore-forming bacteria, responsible for the American Foulbrood (AFB) disease, lethal to honeybee brood. Integrated in bacterial genomes, prophages are often able to provide new genes or to alter phenotypic characteristics of bacteria. The potential role of prophages in the performance of P. larvae has been studied. A total of 55 intact prophage genomes from 11 P. larvae strains were annotated and analysed. The main focus was to infer the influence of their genes with some type of virulence trait (e.g.: toxins), or functions such as antibiotic resistance, metabolic function, germination/sporulation or transporter of nutrients, which could improve bacterial fitness. We also aimed at understanding if specific traits were provided to a given genotype (ERIC I-V). A total of 67 putative genes with different functions were identified. Some were present in all genotypes, as for example, genes encoding phosphomannomutase, HicB and MazE antitoxins, while others were exclusive from a specific genotype. In ERIC I, were found genes encoding a DNA internalization protein or an enhancin-like toxin, in ERIC II, genes responsible for a SocA antitoxin or a DNA mismatch repair protein, in ERIC III, a gene for a lipid phosphatase, in ERIC IV, genes encoding proteins associated to ironsulfur uptake and nitrogen fixation and in ERIC V, genes for an aromatic acid exporter family protein, for an epsilon-toxin type B or for an epithelial and chitin-binding protein. Although several prophage-derived genes are closely linked to metabolic processes, only ERIC V strains appear to have a competitive advantage since prophages contained multiple genes that could contribute to a more aggressive infection. Despite the low representativeness on P. larvae strains diversity, we definitely contribute to leveraging studies in a subject with recent and short knowledge.info:eu-repo/semantics/publishedVersio

Analysis of intact prophages in genomes of Paenibacillus larvae: An important pathogen for bees

The Supplementary materials for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fmicb.2022.903861/full#supplementary-materialPaenibacillus larvae is the etiological agent of American Foulbrood (AFB), a highly contagious and worldwide spread bacterial disease that affects honeybee brood. In this study, all complete P. larvae genomes available on the NCBI database were analyzed in order to detect presence of prophages using the PHASTER software. A total of 55 intact prophages were identified in 11 P. larvae genomes (5.0±2.3 per genome) and were further investigated for the presence of genes encoding relevant traits related to P. larvae. A closer look at the prophage genomes revealed the presence of several putative genes such as metabolic and antimicrobial resistance genes, toxins or bacteriocins, potentially influencing host performance. Some of the coding DNA sequences (CDS) were present in all ERIC-genotypes, while others were only found in a specific genotype. While CDS encoding toxins and antitoxins such as HicB and MazE were found in prophages of all bacterial genotypes, others, from the same category, were provided by prophages particularly to ERIC I (enhancin-like toxin), ERIC II (antitoxin SocA) and ERIC V strains (subunit of Panton-Valentine leukocidin system (PVL) LukF-PV). This is the first in-depth analysis of P. larvae prophages. It provides better knowledge on their impact in the evolution of virulence and fitness of P. larvae, by discovering new features assigned by the viruses.This study was supported by the Portuguese Foundation for Science and Technology (FCT) under the scope of the strategic funding of UIDB/04469/2020 unit. HR was supported by FCT through the grant SFRH/BD/128859/2017 and COVID/BD/151856/2021.info:eu-repo/semantics/publishedVersio

Short-Term Herbage Intake Rate in Temperate Pastures Grasses Grown in Pure or in Intercropping Stands

Oat and ryegrass pastures grown in intercropping systems are the most common forages used during the fall and winter in subtropical and in some temperate climate regions. Nevertheless, it must be taken into account that the way in which the different species of plants are presented to the animals may lead to consequences for the efficiency of the grazing process (Prache and Damasceno 2006). Moreover, in hetero-geneous environments, animals may reduce intake rate due to a partial preference for a specific species (Gonçalves et al. 2009). Regarding the pasture development stage, it is known that the decrease of the leaf/stem ratio causes the animal to reduce the instantaneous herbage intake rate due to the reduction of the bite depth because of the physical barrier imposed by the stem (Benvenutti et al. 2006; Drescher et al. 2006) and/or the search for a higher food quality, in this case, leaf lamina (Soder et al. 2009). However, the dynamics of changes in temperate sward structures grown in pure stands compared to inter-cropping systems and its consequence in heifers\u27 short-term herbage intake rate (STHIR) are scarce. The objective of this work was to assess the changes in the STHIR in pastures of oat, ryegrass and their intercrop during the growing season. The hypothesis tested was that cattle reduce the STHIR in intercropping pastures compared to pure stands, and as the grazing season progress

Tiller Size/Density Compensation in Temperate Climate Grasses Grown in Monoculture or Intercropping Systems under Rotational Grazing

From the standpoint of tiller population dynamics, it is well known that the size and numbers of tillers in forage grasses are inversely related, where a greater tiller population density (TPD) is associated with smaller tillers and vice versa (Sbrissia et al. 2003; Hernandez-Garay et al. 1999; Matthew et al. 1995). This relationship has traditionally been made with the self-thinning power law described by Yoda et al. (1963), which considers the leaf area index (LAI) of the pasture constant when the slope of the relationship between numbers and size of tillers, on a logarithmic scale, is approximately -3/2 (Matthew et al. 1995). Notably few studies have assessed this relationship in intercropping systems. Moreover, although studies that evaluated intercrops showed relationships that were nearly -3/2 for the individually analysed species (Yu et al. 2008; Nie et al. 1997;White and Harper 1970), Nie et al. (1997) suggested that all plants that occur in the grass field should be used to properly estimate self-thinning in mixed species pastures. Thus, the aim of the present study was to test the main hypothesis that the tiller size/density compensation mechanisms operate in the same way in mixed pastures of oat and Italian ryegrass under rotational grazing and that the plant communities adapt their population to maintain a relatively constant LAI

Forage Intake and Nitrogen Retention in Wethers Fed Ryegrass Haylage Supplemented with Maize Silage

Many decision support tools have been developed to predict herbage intake with herbivore ruminants indoors (Faverdin 1992) or at grazing, both using short-term (Baumont et al. 2004) or daily scale input variables (Heard et al. 2004; Delagarde et al. 2011). However, the ingestive and digestive interactions when diets with more than one type of forage are used have not been sufficiently studied. The aim of this study was to assess the effects of maize silage supplementation to wethers receiving ryegrass haylage on OM intake, OM digestibility, microbial protein synthesis and N retention

An Eye for Possibilities in the Development of Children with Cerebral Palsy: Neurobiology and Neuropsychology in a Cultural-Historical Dynamic Understanding

Taking children with Cerebral Palsy (CP) as an example, the article seeks an understanding ofchildren with disabilities that connects neuropsychological theories of neural development withthe situated cognition perspective and the child as an active participant in its social practices. Theearly brain lesion of CP is reconceptualised as a neurobiological constraint that exists in therelations between the neural, cognitive and social levels. Through a multi-method study of twochildren with CP, it is analysed how neurobiological constraints arise, evolve and sometimes areresolved through local matches between the child and its social practices. The result is discussedas support of a developmental science approach that includes processes at the social practice levelalong with knowledge of biological processes

What is the preferred concentration of ethanolamine oleate for sclerotherapy of oral vascular anomalies?

This study compared three different concentrations of EO (1.25%, 2.5% and 5%) for the treatment of oral vascular anomalies (OVAs). This was a retrospective comparative analysis of patients with OVAs treated with EO. Anomalies smaller than 20 mm were included. The patients were treated with 1.25% (G1), 2.5% (G2), and 5% (G3) and clinical data were obtained. The number of sessions, the final volume and dose of EO were statistically analyzed to verify effectiveness and safety of the treatment. The different concentrations of EO were compared considering the number of sessions, the final volume and total dose of EO. Analysis of covariance (ANCOVA) was used to evaluate the influence of covariates on the outcomes. A p-value < 0.05 was considered significant. Nineteen women and 11 men with a median age of 54 years were included. The OVAs were most frequent in the lip (n=14) and cheek (n=9). All lesions exhibited complete clinical healing within 28 days. Patients of G3 required fewer sessions than those of G2 (p=0.017), a lower final volume compared to the other groups (p<0.001), and a lower total dose than G1 (p<0.001). Patients of G1 used a lower total dose than G2 (p=0.003). The concentration of 5% EO performed better than 1.25% and 2.5% for sclerotherapy of OVAs measuring up to 20 mm. This preliminary result should be the preferred concentration of EO to provide an effective and safe treatment of OVAs

Herbage Intake, Methane Emissions and Animal Performance of Steers Grazing Dwarf Elephant Grass with or without Access to \u3cem\u3eArachis pintoi\u3c/em\u3e Pastures

The inclusion of legumes in diets based on grass has nutritional benefits due to ingestive and digestive interactions (Niderkorn and Baumont 2009). Moreover, it is speculated that tropical legumes can contribute to reducing the emission of greenhouse gases (GHG) compared to diets exclusively composed of grasses (Archimède et al. 2011). However, under grazing conditions, these advantages are not always possible to obtain. This occurs when the spatial distribution of sward grasses impose limitations on access to legumes by grazing animals (Solomon et al. 2011). This can be the case, for example, when legumes are overlapped by the leaves of a tufted tall grass, as dwarf elephant grass (Crestani et al. 2013). Considering that management strategies for increasing legumes in the diet of grazing animals should be better studied and data on enteric methane emitted by ruminants eating tropical forages are scarce, the aim of this work was to evaluate the effect of access to an exclusive area of peanuts (Arachis pintoi cv. Amarillo) for cattle grazing dwarf elephant grass (Pennisetum purpureum cv. BRS Kurumi) on herbage intake, animal performance and enteric methane emission

Relationship between QT interval and outcome in low-flow low-gradient aortic stenosis with low left ventricular ejection fraction

Background QT interval has been shown to be associated with cardiovascular events. There is no data regarding the association between QT interval and left ventricular (LV) function and prognosis in patients with low LV ejection fraction (LVEF), low‐flow, low‐gradient aortic stenosis (LF‐LG AS). We aimed to examine the relationship between corrected QT interval (QT c) and LV function and outcome in these patients. Methods and Results Ninety‐three patients (73±10 years; 74% men) with LF‐LG AS (mean gradient 450 ms in men and >470 ms in women. LV global longitudinal strain was measured by speckle tracking and expressed in absolute value |%|. QT c correlated with the following: global longitudinal strain (r=−0.40, P=0.005), LVEF (r=−0.27, P=0.02), stroke volume (r=−0.35, P=0.007), and B‐type natriuretic peptide (r=0.45, P=0.0006). During a median follow‐up of 2.0 years, 49 patients died. Prolonged QT c was associated with a 2‐fold increase in all‐cause mortality (hazard ratio=2.05; P=0.01) and cardiovascular mortality (hazard ratio=1.89; P=0.04). In multivariable analysis adjusted for EuroSCORE, aortic valve replacement, previous myocardial infarction, LVEF, and ß‐blocker medication, prolonged QT c was independently associated with all‐cause mortality (hazard ratio=2.56; P=0.008) and cardiovascular mortality (hazard ratio=2.50; P=0.02). Conclusions In patients with LF‐LG AS and reduced LVEF, longer QT c interval was associated with worse LV function and increased risk of death. Assessment of QT c may provide a simple and inexpensive tool to enhance risk stratification in LF‐LG AS patients