Shelf Transport Pathways Adjacent to the East Australian Current Reveal Sources of Productivity for Coastal Reefs

The region where the East Australian Current (EAC) separates from the coast is dynamic and the shelf circulation is impacted by the interplay of the western boundary current and its eddy field with the coastal ocean. This interaction can drive upwelling, retention or export. Hence understanding the connection between offshore waters and the inner shelf is needed as it influences the productivity potential of valuable coastal rocky reefs. Near urban centres, artificial reefs enhance fishing opportunities in coastal waters, however these reefs are located without consideration of the productivity potential of adjacent waters. Here we identify three dominant modes of mesoscale circulation in the EAC separation region (~31.5−34.5°S); the ‘EAC mode’ which dominates the flow in the poleward direction, and two eddy modes, the ‘EAC eddy mode’ and the ‘Eddy dipole mode’, which are determined by the configuration of a cyclonic and anticyclonic eddy and the relationship with the separated EAC jet. We use a Lagrangian approach to reveal the transport pathways across the shelf to understand the impact of the mesoscale circulation modes and to explore the productivity potential of the coastal waters. We investigate the origin (position and depth) of the water that arrives at the inner-mid shelf over a 21-day period (the plankton productivity timescale). We show that the proportion of water that is upwelled from below the euphotic zone varies spatially, and with each mesoscale circulation mode. Additionally, shelf transport timescales and pathways are also impacted by the mesoscale circulation. The highest proportion of upwelling (70%) occurs upstream of 32.5°S, associated with the EAC jet separation, with vertical displacements of 70–120 m. From 33 to 33.5°S, water comes from offshore above the euphotic layer, and shelf transport timescales are longest. The region of highest retention over the inner shelf is immediately downstream of the EAC separation region. The position of the EAC jet and the location of the cyclonic eddy determines the variability in shelf-ocean interactions and the productivity of shelf waters. These results are useful for understanding productivity of temperate rocky reefs in general and specifically for fisheries enhancements along an increasingly urbanised coast

Vertical-external-cavity surface-emitting lasers and quantum dot lasers

The use of cavity to manipulate photon emission of quantum dots (QDs) has been opening unprecedented opportunities for realizing quantum functional nanophotonic devices and also quantum information devices. In particular, in the field of semiconductor lasers, QDs were introduced as a superior alternative to quantum wells to suppress the temperature dependence of the threshold current in vertical-external-cavity surface-emitting lasers (VECSELs). In this work, a review of properties and development of semiconductor VECSEL devices and QD laser devices is given. Based on the features of VECSEL devices, the main emphasis is put on the recent development of technological approach on semiconductor QD VECSELs. Then, from the viewpoint of both single QD nanolaser and cavity quantum electrodynamics (QED), a single-QD-cavity system resulting from the strong coupling of QD cavity is presented. A difference of this review from the other existing works on semiconductor VECSEL devices is that we will cover both the fundamental aspects and technological approaches of QD VECSEL devices. And lastly, the presented review here has provided a deep insight into useful guideline for the development of QD VECSEL technology and future quantum functional nanophotonic devices and monolithic photonic integrated circuits (MPhICs).Comment: 21 pages, 4 figures. arXiv admin note: text overlap with arXiv:0904.369

Submonolayer Quantum Dots for High Speed Surface Emitting Lasers

We report on progress in growth and applications of submonolayer (SML) quantum dots (QDs) in high-speed vertical-cavity surface-emitting lasers (VCSELs). SML deposition enables controlled formation of high density QD arrays with good size and shape uniformity. Further increase in excitonic absorption and gain is possible with vertical stacking of SML QDs using ultrathin spacer layers. Vertically correlated, tilted or anticorrelated arrangements of the SML islands are realized and allow QD strain and wavefunction engineering. Respectively, both TE and TM polarizations of the luminescence can be achieved in the edge-emission using the same constituting materials. SML QDs provide ultrahigh modal gain, reduced temperature depletion and gain saturation effects when used in active media in laser diodes. Temperature robustness up to 100 °C for 0.98 μm range vertical-cavity surface-emitting lasers (VCSELs) is realized in the continuous wave regime. An open eye 20 Gb/s operation with bit error rates better than 10−12has been achieved in a temperature range 25–85 °Cwithout current adjustment. Relaxation oscillations up to ∼30 GHz have been realized indicating feasibility of 40 Gb/s signal transmission

Nonlinear optics and saturation behavior of quantum dot samples under continuous wave driving

The nonlinear optical response of self-assembled quantum dots is relevant to the application of quantum dot based devices in nonlinear optics, all-optical switching, slow light and self-organization. Theoretical investigations are based on numerical simulations of a spatially and spectrally resolved rate equation model, which takes into account the strong coupling of the quantum dots to the carrier reservoir created by the wetting layer states. The complex dielectric susceptibility of the ground state is obtained. The saturation is shown to follow a behavior in between the one for a dominantly homogeneously and inhomogeneously broadened medium. Approaches to extract the nonlinear refractive index change by fringe shifts in a cavity or self-lensing are discussed. Experimental work on saturation characteristic of InGa/GaAs quantum dots close to the telecommunication O-band (1.24-1.28 mm) and of InAlAs/GaAlAs quantum dots at 780 nm is described and the first demonstration of the cw saturation of absorption in room temperature quantum dot samples is discussed in detail

Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study

Background Huntington's disease is caused by a CAG repeat expansion in the huntingtin gene, HTT. Age at onset has been used as a quantitative phenotype in genetic analysis looking for Huntington's disease modifiers, but is hard to define and not always available. Therefore, we aimed to generate a novel measure of disease progression and to identify genetic markers associated with this progression measure. Methods We generated a progression score on the basis of principal component analysis of prospectively acquired longitudinal changes in motor, cognitive, and imaging measures in the 218 indivduals in the TRACK-HD cohort of Huntington's disease gene mutation carriers (data collected 2008–11). We generated a parallel progression score using data from 1773 previously genotyped participants from the European Huntington's Disease Network REGISTRY study of Huntington's disease mutation carriers (data collected 2003–13). We did a genome-wide association analyses in terms of progression for 216 TRACK-HD participants and 1773 REGISTRY participants, then a meta-analysis of these results was undertaken. Findings Longitudinal motor, cognitive, and imaging scores were correlated with each other in TRACK-HD participants, justifying use of a single, cross-domain measure of disease progression in both studies. The TRACK-HD and REGISTRY progression measures were correlated with each other (r=0·674), and with age at onset (TRACK-HD, r=0·315; REGISTRY, r=0·234). The meta-analysis of progression in TRACK-HD and REGISTRY gave a genome-wide significant signal (p=1·12 × 10−10) on chromosome 5 spanning three genes: MSH3, DHFR, and MTRNR2L2. The genes in this locus were associated with progression in TRACK-HD (MSH3 p=2·94 × 10−8 DHFR p=8·37 × 10−7 MTRNR2L2 p=2·15 × 10−9) and to a lesser extent in REGISTRY (MSH3 p=9·36 × 10−4 DHFR p=8·45 × 10−4 MTRNR2L2 p=1·20 × 10−3). The lead single nucleotide polymorphism (SNP) in TRACK-HD (rs557874766) was genome-wide significant in the meta-analysis (p=1·58 × 10−8), and encodes an aminoacid change (Pro67Ala) in MSH3. In TRACK-HD, each copy of the minor allele at this SNP was associated with a 0·4 units per year (95% CI 0·16–0·66) reduction in the rate of change of the Unified Huntington's Disease Rating Scale (UHDRS) Total Motor Score, and a reduction of 0·12 units per year (95% CI 0·06–0·18) in the rate of change of UHDRS Total Functional Capacity score. These associations remained significant after adjusting for age of onset. Interpretation The multidomain progression measure in TRACK-HD was associated with a functional variant that was genome-wide significant in our meta-analysis. The association in only 216 participants implies that the progression measure is a sensitive reflection of disease burden, that the effect size at this locus is large, or both. Knockout of Msh3 reduces somatic expansion in Huntington's disease mouse models, suggesting this mechanism as an area for future therapeutic investigation

Transport variability over the Hawkesbury Shelf (31.5-34.5°S) driven by the East Australian Current

The Hawkesbury Bioregion located off southeastern Australia (31.5-34.5oS) is a region of highly variable circulation. The region spans the typical separation point of the East Australian Current (EAC), the western boundary current that dominates the flow along the coast of SE Australia. It lies adjacent to a known ocean warming hotspot in the Tasman Sea, and is a region of high productivity. However, we have limited understanding of the circulation, temperature regimes and shelf transport in this region, and the drivers of variability. We configure a high resolution (750m) numerical model for the Hawkesbury Shelf region nested inside 2 data assimilating models of decreasing resolution, to obtain the best estimate of the shelf circulation and transport over a 2-yr period (2012-2013). Here we show that the transport is driven by the mesoscale EAC circulation that strengthens in summer and is related to the separation of the EAC jet from the coast. Transport estimates show strong offshore export is a maximum between 32-33oS. Median offshore transports range 2.5-8.4Sv seasonally and are a maximum during in summer driven by the separation of the EAC jet from the coast. The transport is more variable downstream of the EAC separation, driven by the EAC eddy field. Onshore transport occurs more frequently off Sydney 33.5-34.5oS; seasonal medians range -1.7 to 2.3Sv, with an onshore maximum in winter. The region is biologically productive, and it is a known white shark nursery area despite the dominance of the oligotrophic western boundary current. Hence an understanding of the drivers of circulation and cross-shelf exchange is important