Emergence of central recirculation zone in a V-shaped premixed swirling flame

This paper presents an experimental study on the emergence of the central recirculation zone (CRZ) in a V-shaped premixed swirling flame, using simultaneous measurement of particle image velocimetry (PIV) and CH* chemiluminescence. The results show that either increasing the Reynolds number (Re) or decreasing the equivalence ratio ({\phi}) would facilitate the emergence of CRZ, and the inner shear layer (ISL) plays an essential role in governing the characteristics of CRZ. Further analysis demonstrates that the CRZ emergence can be promoted by higher ISL intensity but suppressed by enhanced viscous diffusion owing to higher flame temperature. As such, the CRZ formation can be interpreted as the outcome of a competition between the ISL intensity, i.e., circulation, and the vorticity consumption due to viscous diffusion. This competition physically corresponds to a special Reynolds number, Re_s, defined as the ratio between the ISL circulation ({\Gamma}) and the ISL effective viscosity ({\nu}_s), with a simplified heat loss model proposed for the temperature and viscosity estimations of the ISL. The outputting {\Gamma}-{\nu}_s plot yields a single boundary line separating the cases with and without CRZ, which points to a common critical Re_s of about 637, justifying the generality of the present criterion for lean-premixed V-shaped swirling flames of various operating conditions. Unlike most previous works which study the CRZ of a swirling flame from the point of vortex breakdown, the present work reveals the importance of enhanced viscous diffusion, caused by flame heating, in suppressing the CRZ emergence

Evolutionary origin of a tetraploid allium species in the Qinghai-Tibet Plateau

Extinct taxa may be detectable if they were ancestors to extant hybrid species, which retain their genetic signature. In this study, we combined phylogenomics, population genetics and fluorescence in situ hybridization (GISH and FISH) analyses to trace the origin of the alpine tetraploid Allium tetraploideum (2n = 4x = 32), one of the five known members in the subgenus Cyathophora. We found that A. tetraploideum was an obvious allotetrapoploid derived from ancestors including at least two closely related diploid species, A. farreri and A. cyathophorum, from which it differs by multiple ecological and genomic attributes. However, these two species cannot account for the full genome of A. tetraploideum, indicating that at least one extinct diploid is also involved in its ancestry. Furthermore, A. tetraploideum appears to have arisen via homoploid hybrid speciation (HHS) from two extinct allotetraploid parents, which derived in turn from the aforementioned diploids. Other modes of origin were possible, but all were even more complex and involved additional extinct ancestors. Our study together highlights how some polyploid species might have very complex origins, involving both HHS and polyploid speciation and also extinct ancestors.</p

BGI-RIS: An integrated information resource and comparative analysis workbench for rice genomics

Rice is a major food staple for the world&apos;s population and serves as a model species in cereal genome research. The Beijing Genomics Institute (BGI) has long been devoting itself to sequencing, information analysis and biological research of the rice and other crop genomes. In order to facilitate the application of the rice genomic information and to provide a foundation for functional and evolutionary studies of other important cereal crops, we implemented our Rice Information System (BGI-RIS), the most up-to-date integrated information resource as well as a workbench for comparative genomic analysis. In addition to comprehensive data from Oryza sativa L. ssp. indica sequenced by BGI, BGI-RIS also hosts carefully curated genome information from Oryza sativa L. ssp. japonica and EST sequences available from other cereal crops. In this resource, sequence contigs of indica (93-11) have been further assembled into Mbp-sized scaffolds and anchored onto the rice chromosomes referenced to physical/genetic markers, cDNAs and BAC-end sequences. We have annotated the rice genomes for gene content, repetitive elements, gene duplications (tandem and segmental) and single nucleotide polymorphisms between rice subspecies. Designed as a basic platform, BGI-RIS presents the sequenced genomes and related information in systematic and graphical ways for the convenience of in-depth comparative studie

The Genomes of Oryza sativa: A History of Duplications

We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, both with multimegabase contiguity, or almost 1,000-fold improvement over the drafts of 2002. Tested against a nonredundant collection of 19,079 full-length cDNAs, 97.7% of the genes are aligned, without fragmentation, to the mapped super-scaffolds of one or the other genome. We introduce a gene identification procedure for plants that does not rely on similarity to known genes to remove erroneous predictions resulting from transposable elements. Using the available EST data to adjust for residual errors in the predictions, the estimated gene count is at least 38,000–40,000. Only 2%–3% of the genes are unique to any one subspecies, comparable to the amount of sequence that might still be missing. Despite this lack of variation in gene content, there is enormous variation in the intergenic regions. At least a quarter of the two sequences could not be aligned, and where they could be aligned, single nucleotide polymorphism (SNP) rates varied from as little as 3.0 SNP/kb in the coding regions to 27.6 SNP/kb in the transposable elements. A more inclusive new approach for analyzing duplication history is introduced here. It reveals an ancient whole-genome duplication, a recent segmental duplication on Chromosomes 11 and 12, and massive ongoing individual gene duplications. We find 18 distinct pairs of duplicated segments that cover 65.7% of the genome; 17 of these pairs date back to a common time before the divergence of the grasses. More important, ongoing individual gene duplications provide a never-ending source of raw material for gene genesis and are major contributors to the differences between members of the grass family

Do We Understand the Collective Short-Time Dynamics in Multicomponent Polymer Melts?

Phase separation in multicomponent polymer melts is a ubiquitous process in polymer engineering and consequently has also attracted abiding interest from simulation and theory. Whereas the equilibrium thermodynamics of macrophase separation and microphase separation in homopolymer blends and copolymers can be rather quantitatively described by Self-Consistent Field Theory (SCFT) or extensions that capture fluctuations, the kinetics of structure evolution poses challenges for a theoretical description. Examining simple, prototypical examples, we highlight the role of internal modes and indicate how Dynamic Self-Consistent Field Theory (D-SCFT) can be generalised to include the consequences of the subdiffusive single-chain dynamics for the collective kinetics on times comparable to the Rouse-relaxation time