Influence of Soil-Residual Fomesafen and Dicamba Tank-Mixtures on the Frequency of PPO-Resistant Waterhemp

The present experiment quantified the selection for PPO-resistant waterhemp following a soil-residual application of fomesafen applied alone (1.32, 13.2, and 132g ai ha-1) and in combination with dicamba (0.77, 7.7, 77 g ai ha-1), respectively. The logistic rate structure aimed to simulate the degradation of herbicide in the soil, with the highest rate being one third of a full use rate. Tissue samples were taken from the first 20 emerging waterhemp plants in each treatment, including the non-treated control, and genotyped using an allele specific TaqMan assay to detect the codon deletion responsible for PPO resistance in waterhemp. Results indicated that applications of fomesafen alone at 132 g ai ha-1 increased the frequency of PPO resistance in the emerging population, with 90% of the sample population having resistance compared to 25% of population in the untreated control. The addition of dicamba to fomesafen reduced the frequency of resistant waterhemp to 70% of the population. While this research demonstrates that the addition of dicamba may not fully reduce the selection for PPO-resistant biotypes, fomesafen and dicamba applied together at the highest rate provided considerable residual control of the resistant waterhemp. Therefore, these results further emphasize the importance of proactive herbicide resistance management by employing full use rates of soil-residual herbicides and the combination of multiple herbicide modes of action

Human cytomegalovirus immediate-early 1 protein rewires upstream STAT3 to downstream STAT1 signaling switching an IL6-type to an IFNγ-like response

MN and CP were supported by the Wellcome Trust (www.wellcome.ac.uk) Institutional Strategic Support Fund and CP was supported by the Deutsche Forschungsgemeinschaft (PA 815/2-1; www.dfg.de).The human cytomegalovirus (hCMV) major immediate-early 1 protein (IE1) is best known for activating transcription to facilitate viral replication. Here we present transcriptome data indicating that IE1 is as significant a repressor as it is an activator of host gene expression. Human cells induced to express IE1 exhibit global repression of IL6- and oncostatin M-responsive STAT3 target genes. This repression is followed by STAT1 phosphorylation and activation of STAT1 target genes normally induced by IFNγ. The observed repression and subsequent activation are both mediated through the same region (amino acids 410 to 445) in the C-terminal domain of IE1, and this region serves as a binding site for STAT3. Depletion of STAT3 phenocopies the STAT1-dependent IFNγ-like response to IE1. In contrast, depletion of the IL6 receptor (IL6ST) or the STAT kinase JAK1 prevents this response. Accordingly, treatment with IL6 leads to prolonged STAT1 instead of STAT3 activation in wild-type IE1 expressing cells, but not in cells expressing a mutant protein (IE1dl410-420) deficient for STAT3 binding. A very similar STAT1-directed response to IL6 is also present in cells infected with a wild-type or revertant hCMV, but not an IE1dl410-420 mutant virus, and this response results in restricted viral replication. We conclude that IE1 is sufficient and necessary to rewire upstream IL6-type to downstream IFNγ-like signaling, two pathways linked to opposing actions, resulting in repressed STAT3- and activated STAT1-responsive genes. These findings relate transcriptional repressor and activator functions of IE1 and suggest unexpected outcomes relevant to viral pathogenesis in response to cytokines or growth factors that signal through the IL6ST-JAK1-STAT3 axis in hCMV-infected cells. Our results also reveal that IE1, a protein considered to be a key activator of the hCMV productive cycle, has an unanticipated role in tempering viral replication.Publisher PDFPeer reviewe

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Incidence of thermophilic, grass and rare arable weeds in cereal fields in the Czech and Slovak Republic

Our objectives were to characterise arable weeds of the Czech and Slovak Republic in cereals, especially considering important groups of species: thermophilic, weedy grasses, and rare and endangered species. The three-year phytocoenological survey was conducted from 2006 to 2008 in five climatic regions and eight different soil types. 379 relevés were recorded, and 281 weed species were found. The effects of both the climatic region and soil type were found to be statistically significant. Species richness increased with altitude. Several species were distinctly associated with soil type, from fertile chernozems to less fertile cambisols, while fluvisols were strongly associated with e.g. Calystegia sepium (L.) R. Br. The incidence of species outside their expected regions generally fit two categories: the most pervasive weeds found almost in all climate regions, such as Echinochloa crus-galli (L.) P. Beauv., or rare weeds in higher altitudes than expected, such as Lolium temulentum L. Rare and endangered species were more likely to be found in a colder climate and poorer soils, and this is linked to less intensive management; however, not all endangered arable species can tolerate such conditions. Even though this data is not recently collected, this is still valuable information on the distribution of weedy species, especially concerning the current interest in maintaining biodiversity

Data-driven grading of acute graft-versus-host disease

Abstract Despite advances in allogeneic hematopoietic cell transplantation, acute graft-versus-host disease (aGVHD) remains its leading complication, yet with heterogeneous outcomes. Here, we analyzed aGVHD phenotypes and clinical classifications in depth in large, multicenter cohorts involving 3019 patients and addressed prevailing gaps by developing data-driven models. We compared, tested and verified these along with all conventional classifications in independent cohorts and found that data-driven grading outperformed conventional grading in Akaike information criterion and concordance index metrics. Data-driven classifications refined aGVHD assessment with up to 12 severity grades, which were associated with distinct nonrelapse mortality (NRM) and confirmed the key role of intestinal aGVHD. We developed an online calculator for physicians to implement principal component-derived grading (PC1). These results provide substantial insight into the evaluation of aGVHD phenotypes and multiorgan involvement, which relegates the exclusive reporting of overall aGVHD severity grades in transplant registries and clinical trials. Data-driven aGVHD grading provides an expandable platform to refine classification and transplant risk assessment