Discontinuous percolation transitions in real physical systems

We study discontinuous percolation transitions (PT) in the diffusion-limited cluster aggregation model of the sol-gel transition as an example of real physical systems, in which the number of aggregation events is regarded as the number of bonds occupied in the system. When particles are Brownian, in which cluster velocity depends on cluster size as $v_s \sim s^{\eta}$ with $\eta=-0.5$, a larger cluster has less probability to collide with other clusters because of its smaller mobility. Thus, the cluster is effectively more suppressed in growth of its size. Then the giant cluster size increases drastically by merging those suppressed clusters near the percolation threshold, exhibiting a discontinuous PT. We also study the tricritical behavior by controlling the parameter $\eta$, and the tricritical point is determined by introducing an asymmetric Smoluchowski equation.Comment: 5 pages, 5 figure

Eur J Human Genet

Heterozygous missense mutations in the serine-threonine kinase receptor BMPR1B result typically in brachydactyly type A2 (BDA2), whereas mutations in the corresponding ligand GDF5 cause brachydactyly type C (BDC). Mutations in the GDF inhibitor Noggin (NOG) or activating mutations in GDF5 cause proximal symphalangism (SYM1). Here, we describe a novel mutation in BMPR1B (R486Q) that is associated with either BDA2 or a BDC/SYM1-like phenotype. Functional investigations of the R486Q mutation were performed and compared with the previously reported BDA2-causing mutation R486W and WT BMPR1B. Overexpression of the mutant receptors in chicken micromass cultures resulted in a strong inhibition of chondrogenesis with the R486Q mutant, showing a stronger effect than the R486W mutant. To investigate the consequences of the BMPR1B mutations on the intracellular signal transduction, we used stably transfected C2C12 cells and measured the activity of SMAD-dependent and SMAD-independent pathways. SMAD activation after stimulation with GDF5 was suppressed in both mutants. Alkaline phosphatase induction showed an almost complete loss of activation by both mutants. Our data extend the previously known mutational and phenotypic spectrum associated with mutations in BMPR1B. Disturbances of NOG-GDF5-BMPR1B signaling cascade can result in similar clinical manifestations depending on the quantitative effect and mode of action of the specific mutations within the same functional pathway

Caloric Curves for small systems in the Nuclear Lattice Gas Model

For pedagogical reasons we compute the caloric curve for 11 particles in a $3^3$ lattice. Monte-Carlo simulation can be avoided and exact results are obtained. There is no back-bending in the caloric curve and negative specific heat does not appear. We point out that the introduction of kinetic energy in the nuclear Lattice Gas Model modifies the results of the standard Lattice Gas Model in a profound way.Comment: 12 pages, Revtex, including 4 postscript figure

The ideal gas as an urn model: derivation of the entropy formula

The approach of an ideal gas to equilibrium is simulated through a generalization of the Ehrenfest ball-and-box model. In the present model, the interior of each box is discretized, {\it i.e.}, balls/particles live in cells whose occupation can be either multiple or single. Moreover, particles occasionally undergo random, but elastic, collisions between each other and against the container walls. I show, both analitically and numerically, that the number and energy of particles in a given box eventually evolve to an equilibrium distribution $W$ which, depending on cell occupations, is binomial or hypergeometric in the particle number and beta-like in the energy. Furthermore, the long-run probability density of particle velocities is Maxwellian, whereas the Boltzmann entropy $\ln W$ exactly reproduces the ideal-gas entropy. Besides its own interest, this exercise is also relevant for pedagogical purposes since it provides, although in a simple case, an explicit probabilistic foundation for the ergodic hypothesis and for the maximum-entropy principle of thermodynamics. For this reason, its discussion can profitably be included in a graduate course on statistical mechanics.Comment: 17 pages, 3 figure

Thermodynamic entropy of a many body energy eigenstate

It is argued that a typical many body energy eigenstate has a well defined thermodynamic entropy and that individual eigenstates possess thermodynamic characteristics analogous to those of generic isolated systems. We examine large systems with eigenstate energies equivalent to finite temperatures. When quasi-static evolution of a system is adiabatic (in the quantum mechanical sense), two coupled subsystems can transfer heat from one subsystem to another yet remain in an energy eigenstate. To explicitly construct the entropy from the wave function, degrees of freedom are divided into two unequal parts. It is argued that the entanglement entropy between these two subsystems is the thermodynamic entropy per degree of freedom for the smaller subsystem. This is done by tracing over the larger subsystem to obtain a density matrix, and calculating the diagonal and off-diagonal contributions to the entanglement entropy.Comment: 18 page

Fluctuating and dissipative dynamics of dark solitons in quasi-condensates

The fluctuating and dissipative dynamics of matter-wave dark solitons within harmonically trapped, partially condensed Bose gases is studied both numerically and analytically. A study of the stochastic Gross-Pitaevskii equation, which correctly accounts for density and phase fluctuations at finite temperatures, reveals dark soliton decay times to be lognormally distributed at each temperature, thereby characterizing the previously predicted long lived soliton trajectories within each ensemble of numerical realizations (S.P. Cockburn {\it et al.}, Phys. Rev. Lett. 104, 174101 (2010)). Expectation values for the average soliton lifetimes extracted from these distributions are found to agree well with both numerical and analytic predictions based upon the dissipative Gross-Pitaevskii model (with the same {\it ab initio} damping). Probing the regime for which $0.8 k_{B}T < \mu < 1.6 k_{B}T$, we find average soliton lifetimes to scale with temperature as $\tau\sim T^{-4}$, in agreement with predictions previously made for the low-temperature regime $k_{B}T\ll\mu$. The model is also shown to capture the experimentally-relevant decrease in the visibility of an oscillating soliton due to the presence of background fluctuations.Comment: 17 pages, 14 figure

Dynamic roughening and fluctuations of dipolar chains

Nonmagnetic particles in a carrier ferrofluid acquire an effective dipolar moment when placed in an external magnetic field. This fact leads them to form chains that will roughen due to Brownian motion when the magnetic field is decreased. We study this process through experiments, theory and simulations, three methods that agree on the scaling behavior over 5 orders of magnitude. The RMS width goes initially as $t^{1/2}$, then as $t^{1/4}$ before it saturates. We show how these results complement existing results on polymer chains, and how the chain dynamics may be described by a recent non-Markovian formulation of anomalous diffusion.Comment: 4 pages, 3 figures, submitted to Phys. Rev. Let

Quantum Dissipation and Decoherence via Interaction with Low-Dimensional Chaos: a Feynman-Vernon Approach

We study the effects of dissipation and decoherence induced on a harmonic oscillator by the coupling to a chaotic system with two degrees of freedom. Using the Feynman-Vernon approach and treating the chaotic system semiclassically we show that the effects of the low dimensional chaotic environment are in many ways similar to those produced by thermal baths. The classical correlation and response functions play important roles in both classical and quantum formulations. Our results are qualitatively similar to the high temperature regime of the Caldeira-Leggett model.Comment: 31 pages, 4 figure

Electronic Theory for the Nonlinear Magneto-Optical Response of Transition-Metals at Surfaces and Interfaces: Dependence of the Kerr-Rotation on Polarization and on the Magnetic Easy Axis

We extend our previous study of the polarization dependence of the nonlinear optical response to the case of magnetic surfaces and buried magnetic interfaces. We calculate for the longitudinal and polar configuration the nonlinear magneto-optical Kerr rotation angle. In particular, we show which tensor elements of the susceptibilities are involved in the enhancement of the Kerr rotation in nonlinear optics for different configurations and we demonstrate by a detailed analysis how the direction of the magnetization and thus the easy axis at surfaces and buried interfaces can be determined from the polarization dependence of the nonlinear magneto-optical response, since the nonlinear Kerr rotation is sensitive to the electromagnetic field components instead of merely the intensities. We also prove from the microscopic treatment of spin-orbit coupling that there is an intrinsic phase difference of 90$^{\circ }$ between tensor elements which are even or odd under magnetization reversal in contrast to linear magneto-optics. Finally, we compare our results with several experiments on Co/Cu films and on Co/Au and Fe/Cr multilayers. We conclude that the nonlinear magneto-optical Kerr-effect determines uniquely the magnetic structure and in particular the magnetic easy axis in films and at multilayer interfaces.Comment: 23 pages Revtex, preprintstyle, 2 uuencoded figure

Fcc-bcc transition for Yukawa interactions determined by applied strain deformation

Calculations of the work required to transform between bcc and fcc phases yield a high-precision bcc-fcc transition line for monodisperse point Yukawa (screened-Couloumb) systems. Our results agree qualitatively but not quantitatively with previously published simulations and phenomenological criteria for the bcc-fcc transition. In particular, the bcc-fcc-fluid triple point lies at a higher inverse screening length than previously reported.Comment: RevTex4, 9 pages, 6 figures. Discussion of phase coexistence extended, a few other minor clarifications added, referencing improved. Accepted for publication by Physical Review