Physiology as a tool for at-risk animal recovery planning: An analysis of Canadian recovery strategies with global recommendations

Many government organizations use recovery planning to synthesize threats, propose management strategies, and determine recovery criteria for threatened wildlife. Little is known about the extent to which physiological knowledge has been used in recovery planning, despite its potential to offer key biological information that could aid in recovery success. Using recovery strategies for at-risk animal species in Canada as a case study, we analyzed the prevalence, purpose, and type of physiological knowledge being used in recovery planning. We found that 73% of strategies contained mention of physiology and that incorporation of physiology has increased since 2006. Of the various types of physiological tools available, reference to stress, immune, thermal, and bioenergetic metrics appeared most frequently. Physiological information was more likely to be found in the background and threat assessment sections compared to action and future research sections, and less likely to be included in strategies for arthropods and birds compared to other taxonomic groups. By synthesizing our results with previous studies, we provide recommendations to encourage the application of physiological tools in recovery planning worldwide, such as increased incorporation of physiology in ongoing threat monitoring, critical habitat assessments, monitoring the success of recovery actions, and modeling responses to future environmental changes.publishedVersio

Chill out: physiological responses to winter ice-angling in two temperate freshwater fishes

A large body of research has documented the stress response of fish following angling capture. Nearly all of these studies have taken place during the open-water season, with almost no work focused on the effects of capture in the winter via ice angling. We therefore conducted a study to examine physiological disturbance and reflex impairment following capture by ice-angling in two commonly targeted species, bluegill Lepomis macrochirus and yellow perch Perca flavescens. Fish were captured from a lake in eastern Wisconsin (USA) and sampled either immediately or after being held in tanks for 0.5, 2 or 4 h. Sampling involved the assessment of reflex action mortality predictors (RAMP) and a blood biopsy that was used to measure concentrations of plasma cortisol and lactate. The capture-induced increase in plasma cortisol concentration was delayed relative to responses documented in previous experiments conducted in the summer and reached a relative high point at 4 h post-capture. Reflex impairment was highest at the first post-capture time point (0.5 h) and declined with each successive sampling (2 and 4 h) during recovery. Bluegill showed a higher magnitude stress response than yellow perch in terms of plasma cortisol and RAMP scores, but not when comparing plasma lactate. Overall, these data show that ice-angling induces a comparatively mild stress response relative to that found in previous studies of angled fish. While recovery of plasma stress indicators does not occur within 4 h, declining RAMP scores demonstrate that ice-angled bluegill and yellow perch do recover vitality following capture."This work was supported by Federal Aid in Sport Fish Restoration Project F-69-R-29 to J.A.S."https://academic.oup.com/conphys/article/5/1/cox027/376958

Facing the River Gauntlet: Understanding the Effects of Fisheries Capture and Water Temperature on the Physiology of Coho Salmon

An improved understanding of bycatch mortality can be achieved by complementing field studies with laboratory experiments that use physiological assessments. This study examined the effects of water temperature and the duration of net entanglement on physiological disturbance and recovery in coho salmon (Oncorhynchus kisutch) after release from a simulated beach seine capture. Heart rate was monitored using implanted electrocardiogram biologgers that allowed fish to swim freely before and after release. A subset of fish was recovered in respirometers to monitor metabolic recovery, and separate groups of fish were sacrificed at different times to assess blood and white muscle biochemistry. One hour after release, fish had elevated lactate in muscle and blood plasma, depleted tissue energy stores, and altered osmoregulatory status, particularly in warmer (15 vs. 10°C) and longer (15 vs. 2 min) capture treatments. A significant effect of entanglement duration on blood and muscle metabolites remained after 4 h. Oxygen consumption rate recovered to baseline within 7–10 h. However, recovery of heart rate to routine levels was longer and more variable, with most fish taking over 10 h, and 33% of fish failing to recover within 24 h. There were no significant treatment effects on either oxygen consumption or heart rate recovery. Our results indicate that fishers should minimize handling time for bycatch and maximize oxygen supply during crowding, especially when temperatures are elevated. Physiological data, such as those presented here, can be used to understand mechanisms that underlie bycatch impairment and mortality, and thus inform best practices that ensure the welfare and conservation of affected species

A physiological comparison of three techniques for reviving sockeye salmon exposed to a severe capture stressor during upriver migration

Capture of fish in commercial and recreational fisheries causes disruption to their physiological homeostasis and can result in delayed mortality for fish that are released. For fish that are severely impaired, it may be desirable to attempt revival prior to release to reduce the likelihood of post-release mortality. In this study, male sockeye salmon (Oncorhynchus nerka) undergoing their upriver migration were used to examine short-term physiological changes during the following three revival treatments after beach seine capture and air exposure: a pump-powered recovery box that provided ram ventilation at one of two water flow rates; and a cylindrical, in-river recovery bag, which ensured that fish were oriented into the river flow. Beach seine capture followed by a 3 min air exposure resulted in severe impairment of reflexes such that fish could not maintain positive orientation or properly ventilate. All three revival treatments resulted in significant reductions in reflex impairment within 15 min, with full recovery of reflex responses observed within 60-120 min. For most variables measured, including plasma lactate, cortisol and osmolality, there were no significant differences among revival treatments. There was some evidence for impaired recovery in the low-flow recovery box, in the form of higher haematocrit and plasma sodium. These data mirror published recovery profiles for a recovery box study in the marine environment where a survival benefit occurred, suggesting that the methods tested here are viable options for reviving salmon caught in freshwater. Importantly, with most of the benefit to animal vitality accrued in the first 15 min, prolonging recovery when fish become vigorous may not provide added benefit because the confinement itself is likely to serve as a stressor

Precision Gauge Unification from Extra Yukawa Couplings

We investigate the impact of extra vector-like GUT multiplets on the predicted value of the strong coupling. We find in particular that Yukawa couplings between such extra multiplets and the MSSM Higgs doublets can resolve the familiar two-loop discrepancy between the SUSY GUT prediction and the measured value of alpha_3. Our analysis highlights the advantages of the holomorphic scheme, where the perturbative running of gauge couplings is saturated at one loop and further corrections are conveniently described in terms of wavefunction renormalization factors. If the gauge couplings as well as the extra Yukawas are of O(1) at the unification scale, the relevant two-loop correction can be obtained analytically. However, the effect persists also in the weakly-coupled domain, where possible non-perturbative corrections at the GUT scale are under better control.Comment: 26 pages, LaTeX. v6: Important early reference adde

On the relevance of animal behavior to the management and conservation of fishes and fisheries

There are many syntheses on the role of animal behavior in understanding and mitigating conservation threats for wildlife. That body of work has inspired the development of a new discipline called conservation behavior. Yet, the majority of those synthetic papers focus on non-fish taxa such as birds and mammals. Many fish populations are subject to intensive exploitation and management and for decades researchers have used concepts and knowledge from animal behavior to support management and conservation actions. Dr. David L. G. Noakes is an influential ethologist who did much foundational work related to illustrating how behavior was relevant to the management and conservation of wild fish. We pay tribute to the late Dr. Noakes by summarizing the relevance of animal behavior to fisheries management and conservation. To do so, we first consider what behavior has revealed about how fish respond to key threats such as habitat alteration and loss, invasive species, climate change, pollution, and exploitation. We then consider how behavior has informed the application of common management interventions such as protected areas and spatial planning, stock enhancement, and restoration of habitat and connectivity. Our synthesis focuses on the totality of the field but includes reflections on the specific contributions of Dr. Noakes. Themes emerging from his approach include the value of fundamental research, management-scale experiments, and bridging behavior, physiology, and ecology. Animal behavior plays a key role in understanding and mitigating threats to wild fish populations and will become more important with the increasing pressures facing aquatic ecosystems. Fortunately, the toolbox for studying behavior is expanding, with technological and analytical advances revolutionizing our understanding of wild fish and generating new knowledge for fisheries managers and conservation practitioners.publishedVersio

Light Gluino Search for Decays Containing pi+pi- or pi0 from a Neutral Hadron Beam at Fermilab

We report on two null searches, one for the spontaneous appearance of $\pi^+\pi^-$ pairs, another for a single $\pi^0$, consistent with the decay of a long-lived neutral particle into hadrons and an unseen neutral particle. For the lowest level gluon-gluino bound state, known as the $R^0$, we exclude the decays $R^0\to \pi^+\pi^-\tilde{\gamma}$ and $R^0\to \pi^0\tilde{\gamma}$ for the masses of $R^0$ and $\tilde{\gamma}$ in the theoretically allowed range. In the most interesting $R^0$ mass range, $\leq 3 GeV/c^2$, we exclude $R^0$ lifetimes from $3\times 10^{-10}$ seconds to as high as $10^{-3}$ seconds, assuming perturbative QCD production for the $R^0$.Comment: 15 pages, 7 figure

Oxygen- and capacity-limited thermal tolerance: blurring ecology and physiology

No abstract available

Folliculin mutations are not associated with severe COPD

<p>Abstract</p> <p>Background</p> <p>Rare loss-of-function folliculin (<it>FLCN</it>) mutations are the genetic cause of Birt-Hogg-Dubé syndrome, a monogenic disorder characterized by spontaneous pneumothorax, fibrofolliculomas, and kidney tumors. Loss-of-function folliculin mutations have also been described in pedigrees with familial spontaneous pneumothorax. Because the majority of patients with folliculin mutations have radiographic evidence of pulmonary cysts, folliculin has been hypothesized to contribute to the development of emphysema.</p> <p>To determine whether folliculin sequence variants are risk factors for severe COPD, we genotyped seven previously reported Birt-Hogg-Dubé or familial spontaneous pneumothorax associated folliculin mutations in 152 severe COPD probands participating in the Boston Early-Onset COPD Study. We performed bidirectional resequencing of all 14 folliculin exons in a subset of 41 probands and subsequently genotyped four identified variants in an independent sample of345 COPD subjects from the National Emphysema Treatment Trial (cases) and 420 male smokers with normal lung function from the Normative Aging Study (controls).</p> <p>Results</p> <p>None of the seven previously reported Birt-Hogg-Dubé or familial spontaneous pneumothorax mutations were observed in the 152 severe, early-onset COPD probands. Exon resequencing identified 31 variants, including two non-synonymous polymorphisms and two common non-coding polymorphisms. No significant association was observed for any of these four variants with presence of COPD or emphysema-related phenotypes.</p> <p>Conclusion</p> <p>Genetic variation in folliculin does not appear to be a major risk factor for severe COPD. These data suggest that familial spontaneous pneumothorax and COPD have distinct genetic causes, despite some overlap in radiographic characteristics.</p

Global Analysis of the Impact of Environmental Perturbation on cis-Regulation of Gene Expression

Genetic variants altering cis-regulation of normal gene expression (cis-eQTLs) have been extensively mapped in human cells and tissues, but the extent by which controlled, environmental perturbation influences cis-eQTLs is unclear. We carried out large-scale induction experiments using primary human bone cells derived from unrelated donors of Swedish origin treated with 18 different stimuli (7 treatments and 2 controls, each assessed at 2 time points). The treatments with the largest impact on the transcriptome, verified on two independent expression arrays, included BMP-2 (t = 2h), dexamethasone (DEX) (t = 24h), and PGE2 (t = 24h). Using these treatments and control, we performed expression profiling for 18,144 RefSeq transcripts on biological replicates of the complete study cohort of 113 individuals (ntotal = 782) and combined it with genome-wide SNP-genotyping data in order to map treatment-specific cis-eQTLs (defined as SNPs located within the gene ±250 kb). We found that 93% of cis-eQTLs at 1% FDR were observed in at least one additional treatment, and in fact, on average, only 1.4% of the cis-eQTLs were considered as treatment-specific at high confidence. The relative invariability of cis-regulation following perturbation was reiterated independently by genome-wide allelic expression tests where only a small proportion of variance could be attributed to treatment. Treatment-specific cis-regulatory effects were, however, 2- to 6-fold more abundant among differently expressed genes upon treatment. We further followed-up and validated the DEX–specific cis-regulation of the MYO6 and TNC loci and found top cis-regulatory variants located 180 kb and 250 kb upstream of the transcription start sites, respectively. Our results suggest that, as opposed to tissue-specificity of cis-eQTLs, the interactions between cellular environment and cis-variants are relatively rare (∼1.5%), but that detection of such specific interactions can be achieved by a combination of functional genomic approaches as described here