ESTs in Plants: Where Are We Heading?

Expressed sequence tags (ESTs) are the most important resources for transcriptome exploration. Next-generation sequencing technologies have been generating gigabytes of genetic codes representing genes, partial and whole genomes most of which are EST datasets. Niche of EST in plants for breeding, regulation of gene expression through miRNA studies, and their application for adapting to climatic changes are discussed. Some of the recent tools for analysis of EST exclusive to plants are listed out. Systems biology though in its infancy in plants has influenced EST mapping for unraveling gene regulatory circuits, which is illustrated with a few significant examples. This review throws a glance at the evolving role of ESTs in plants

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1.

In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field

Structures and morphotectonic evolution of the frontal fold-thrust belt, Kameng river section, Arunachal Himalaya, India

The Neogene-Quaternary Siwalik foreland fold and thrust belt is studied for better understanding of tectonics along the Kameng river section of Arunachal Pradesh, India. The Kimi, Dafla, Subansiri, and the Kimin Formation correspond to Lower, Middle and Upper Siwaliks, respectively. The lithology in the foreland basin is dominantly sandstones, siltstones, claystones, carbonaceous shales, and boulder beds in the upper part. The structural style of the sedimentary sequence from the Main Boundary Thrust southward shows first order ramp-flat geometry. The brittle shear transfers slip across glide horizons to shallower depth. Repeated splay generations from a major regional-scale floor transfers slip from one glide horizon to another that shortens and thickens the crust. In the micro-scale, the lithological response in the structural development is well documented as pressure solution seams and other diagenetic deformation signatures. The basement asperity plays a significant role as the moving thrust front produced a major lateral ramp. The differential movement of the mountain front on both sides of the ramp is decipherable. This is especially true at the western part of the SE flowing Kameng river. The tectonic evolution of the area initiated with slip along the MBT 11 Ma ago along with the deposition of the Siwalik sediments. With southward propagation of the mountain front, the foreland basin shifted towards S, produced splay thrusts from the Himalayan Frontal Thrust-1 (HFT-1), which has been uplifting the Kimin and the older terraces

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Not AvailableThe present experiment was conducted to study the changes oftriiodothyronine (T3) and thyroxine (T4)hormones in the crossbred pigs (Hampshire × Assam local) under tropical climate and high rainfall conditionof Assam, India. The experiment included a total of 36 numbers of crossbred weaned female pigs. Eighteen (18) animals were subjected to treatment separately during summer and winter. The selected animals were divided into three groups with six pigs in each group consisting of the control group (Treatment 1), one group was fed melatonin @3 mg/animal (Treatment 2) and the other group was fed Vitamin E @100 mg (Treatment 3) for both the seasons. The animals were maintained in the College of Veterinary Science (AICRP on Pig), Assam Agicultural University, Khanapara, Guwahati-781022. The Temperature-Humidity Index (THI) was calculated out by using standard formula. Triiodothyronine (T3) and thyroxine (T4) hormones were estimated by Radioimmunoassay (RIA) technique. Serum T4 concentrations was significantly (P<0.01) lower during summer as compared to winter in all the treatment groups. Serum T4 concentration showed significant difference between treatment, between season and also between treatment and season. The thyroid levels showed alteration with the change in season, at the same time antioxidant supplementation was found to counter the seasonal stress up to an extent.Not Availabl

Synthesis of benzylidenemalononitrile by Knoevenagel condensation through monodisperse carbon nanotube-based NiCu nanohybrids

Monodisperse nickel/copper nanohybrids (NiCu@MWCNT) based on multi-walled carbon nanotubes (MWCNT) were prepared for the Knoevenagel condensation of aryl and aliphatic aldehydes. The synthesis of these nanohybrids was carried out by the ultrasonic hydroxide assisted reduction method. NiCu@MWCNT nanohybrids were characterized by analytical techniques such as X-ray diffraction (XRD), X-ray photoelectron spectroscopy (XPS), transmission electron microscopy (TEM), high-resolution transmission electron microscopy (HR-TEM), and Raman spectroscopy. According to characterization results, NiCu@MWCNT showed that these nanohybrids form highly uniform, crystalline, monodisperse, colloidally stable NiCu@MWCNT nanohybrids were successfully synthesized. Thereafter, a model reaction was carried out to obtain benzylidenemalononitrile derivatives using NiCu@MWCNT as a catalyst, and showed high catalytic performance under mild conditions over 10-180 min.Dumlupinar UniversityDumlupinar University [2014-05, 2015-35, 2015-50]; Duzce UniversityDuzce University [2015.26.04.371]The authors would like to thank Dumlupinar University (2014-05, 2015-35, and 2015-50) and Duzce University (grant no. 2015.26.04.371) for funding.WOS:0005563883000122-s2.0-85088705103PubMed: 3272817