2,221 research outputs found
From Molecular Cores to Planet-forming Disks with SIRTF
The SIRTF mission and the Legacy programs will provide coherent data bases
for extra-galactic and Galactic science that will rapidly become available to
researchers through a public archive. The capabilities of SIRTF and the six
legacy programs are described briefly. Then the cores to disks (c2d) program is
described in more detail. The c2d program will use all three SIRTF instruments
(IRAC, MIPS, and IRS) to observe sources from molecular cores to protoplanetary
disks, with a wide range of cloud masses, stellar masses, and star-forming
environments. The SIRTF data will stimulate many follow-up studies, both with
SIRTF and with other instruments.Comment: 6 pages, from Fourth Cologne-Bonn-Zermatt-Symposium, The Dense
Interstellar Matter in Galaxie
Molecular Stress-inducing Compounds Increase Osteoclast Formation in a Heat Shock Factor 1 Protein-dependent Manner
Toward optimal implementation of cancer prevention and control programs in public health: A study protocol on mis-implementation
Abstract Background Much of the cancer burden in the USA is preventable, through application of existing knowledge. State-level funders and public health practitioners are in ideal positions to affect programs and policies related to cancer control. Mis-implementation refers to ending effective programs and policies prematurely or continuing ineffective ones. Greater attention to mis-implementation should lead to use of effective interventions and more efficient expenditure of resources, which in the long term, will lead to more positive cancer outcomes. Methods This is a three-phase study that takes a comprehensive approach, leading to the elucidation of tactics for addressing mis-implementation. Phase 1: We assess the extent to which mis-implementation is occurring among state cancer control programs in public health. This initial phase will involve a survey of 800 practitioners representing all states. The programs represented will span the full continuum of cancer control, from primary prevention to survivorship. Phase 2: Using data from phase 1 to identify organizations in which mis-implementation is particularly high or low, the team will conduct eight comparative case studies to get a richer understanding of mis-implementation and to understand contextual differences. These case studies will highlight lessons learned about mis-implementation and identify hypothesized drivers. Phase 3: Agent-based modeling will be used to identify dynamic interactions between individual capacity, organizational capacity, use of evidence, funding, and external factors driving mis-implementation. The team will then translate and disseminate findings from phases 1 to 3 to practitioners and practice-related stakeholders to support the reduction of mis-implementation. Discussion This study is innovative and significant because it will (1) be the first to refine and further develop reliable and valid measures of mis-implementation of public health programs; (2) bring together a strong, transdisciplinary team with significant expertise in practice-based research; (3) use agent-based modeling to address cancer control implementation; and (4) use a participatory, evidence-based, stakeholder-driven approach that will identify key leverage points for addressing mis-implementation among state public health programs. This research is expected to provide replicable computational simulation models that can identify leverage points and public health system dynamics to reduce mis-implementation in cancer control and may be of interest to other health areas
Towards the F-Theorem: N=2 Field Theories on the Three-Sphere
For 3-dimensional field theories with {\cal N}=2 supersymmetry the Euclidean
path integrals on the three-sphere can be calculated using the method of
localization; they reduce to certain matrix integrals that depend on the
R-charges of the matter fields. We solve a number of such large N matrix models
and calculate the free energy F as a function of the trial R-charges consistent
with the marginality of the superpotential. In all our {\cal N}=2
superconformal examples, the local maximization of F yields answers that scale
as N^{3/2} and agree with the dual M-theory backgrounds AdS_4 x Y, where Y are
7-dimensional Sasaki-Einstein spaces. We also find in toric examples that local
F-maximization is equivalent to the minimization of the volume of Y over the
space of Sasakian metrics, a procedure also referred to as Z-minimization.
Moreover, we find that the functions F and Z are related for any trial
R-charges. In the models we study F is positive and decreases along RG flows.
We therefore propose the "F-theorem" that we hope applies to all 3-d field
theories: the finite part of the free energy on the three-sphere decreases
along RG trajectories and is stationary at RG fixed points. We also show that
in an infinite class of Chern-Simons-matter gauge theories where the
Chern-Simons levels do not sum to zero, the free energy grows as N^{5/3} at
large N. This non-trivial scaling matches that of the free energy of the
gravity duals in type IIA string theory with Romans mass.Comment: 66 pages, 10 figures; v2: refs. added, minor improvement
Methane storms as a driver of Titan's dune orientation
Titan's equatorial regions are covered by eastward propagating linear dunes.
This direction is opposite to mean surface winds simulated by Global Climate
Models (GCMs), which are oriented westward at these latitudes, similar to trade
winds on Earth. Different hypotheses have been proposed to address this
apparent contradiction, involving Saturn's gravitational tides, large scale
topography or wind statistics, but none of them can explain a global eastward
dune propagation in the equatorial band. Here we analyse the impact of
equinoctial tropical methane storms developing in the superrotating atmosphere
(i.e. the eastward winds at high altitude) on Titan's dune orientation. Using
mesoscale simulations of convective methane clouds with a GCM wind profile
featuring superrotation, we show that Titan's storms should produce fast
eastward gust fronts above the surface. Such gusts dominate the aeolian
transport, allowing dunes to extend eastward. This analysis therefore suggests
a coupling between superrotation, tropical methane storms and dune formation on
Titan. Furthermore, together with GCM predictions and analogies to some
terrestrial dune fields, this work provides a general framework explaining
several major features of Titan's dunes: linear shape, eastward propagation and
poleward divergence, and implies an equatorial origin of Titan's dune sand.Comment: Published online on Nature Geoscience on 13 April 201
The transition between stochastic and deterministic behavior in an excitable gene circuit
We explore the connection between a stochastic simulation model and an
ordinary differential equations (ODEs) model of the dynamics of an excitable
gene circuit that exhibits noise-induced oscillations. Near a bifurcation point
in the ODE model, the stochastic simulation model yields behavior dramatically
different from that predicted by the ODE model. We analyze how that behavior
depends on the gene copy number and find very slow convergence to the large
number limit near the bifurcation point. The implications for understanding the
dynamics of gene circuits and other birth-death dynamical systems with small
numbers of constituents are discussed.Comment: PLoS ONE: Research Article, published 11 Apr 201
Entanglement Entropy of 3-d Conformal Gauge Theories with Many Flavors
Three-dimensional conformal field theories (CFTs) of deconfined gauge fields
coupled to gapless flavors of fermionic and bosonic matter describe quantum
critical points of condensed matter systems in two spatial dimensions. An
important characteristic of these CFTs is the finite part of the entanglement
entropy across a circle. The negative of this quantity is equal to the finite
part of the free energy of the Euclidean CFT on the three-sphere, and it has
been proposed to satisfy the so called F-theorem, which states that it
decreases under RG flow and is stationary at RG fixed points. We calculate the
three-sphere free energy of non-supersymmetric gauge theory with a large number
N_F of bosonic and/or fermionic flavors to the first subleading order in 1/N_F.
We also calculate the exact free energies of the analogous chiral and
non-chiral {\cal N} = 2 supersymmetric theories using localization, and find
agreement with the 1/N_F expansion. We analyze some RG flows of supersymmetric
theories, providing further evidence for the F-theorem.Comment: 31 pages, 2 figures; v2 refs added, minor change
Secondary bacterial infections of buruli ulcer lesions before and after chemotherapy with streptomycin and rifampicin
Buruli ulcer (BU), caused by Mycobacterium ulcerans is a chronic necrotizing skin disease. It usually starts with a subcutaneous nodule or plaque containing large clusters of extracellular acid-fast bacilli. Surrounding tissue is destroyed by the cytotoxic macrolide toxin mycolactone produced by microcolonies of M. ulcerans. Skin covering the destroyed subcutaneous fat and soft tissue may eventually break down leading to the formation of large ulcers that progress, if untreated, over months and years. Here we have analyzed the bacterial flora of BU lesions of three different groups of patients before, during and after daily treatment with streptomycin and rifampicin for eight weeks (SR8) and determined drug resistance of the bacteria isolated from the lesions. Before SR8 treatment, more than 60% of the examined BU lesions were infected with other bacteria, with Staphylococcus aureus and Pseudomonas aeruginosa being the most prominent ones. During treatment, 65% of all lesions were still infected, mainly with P. aeruginosa. After completion of SR8 treatment, still more than 75% of lesions clinically suspected to be infected were microbiologically confirmed as infected, mainly with P. aeruginosa or Proteus miriabilis. Drug susceptibility tests revealed especially for S. aureus a high frequency of resistance to the first line drugs used in Ghana. Our results show that secondary infection of BU lesions is common. This could lead to delayed healing and should therefore be further investigated
Evolutionary distances in the twilight zone -- a rational kernel approach
Phylogenetic tree reconstruction is traditionally based on multiple sequence
alignments (MSAs) and heavily depends on the validity of this information
bottleneck. With increasing sequence divergence, the quality of MSAs decays
quickly. Alignment-free methods, on the other hand, are based on abstract
string comparisons and avoid potential alignment problems. However, in general
they are not biologically motivated and ignore our knowledge about the
evolution of sequences. Thus, it is still a major open question how to define
an evolutionary distance metric between divergent sequences that makes use of
indel information and known substitution models without the need for a multiple
alignment. Here we propose a new evolutionary distance metric to close this
gap. It uses finite-state transducers to create a biologically motivated
similarity score which models substitutions and indels, and does not depend on
a multiple sequence alignment. The sequence similarity score is defined in
analogy to pairwise alignments and additionally has the positive semi-definite
property. We describe its derivation and show in simulation studies and
real-world examples that it is more accurate in reconstructing phylogenies than
competing methods. The result is a new and accurate way of determining
evolutionary distances in and beyond the twilight zone of sequence alignments
that is suitable for large datasets.Comment: to appear in PLoS ON
F-Theorem without Supersymmetry
The conjectured F-theorem for three-dimensional field theories states that
the finite part of the free energy on S^3 decreases along RG trajectories and
is stationary at the fixed points. In previous work various successful tests of
this proposal were carried out for theories with {\cal N}=2 supersymmetry. In
this paper we perform more general tests that do not rely on supersymmetry. We
study perturbatively the RG flows produced by weakly relevant operators and
show that the free energy decreases monotonically. We also consider large N
field theories perturbed by relevant double trace operators, free massive field
theories, and some Chern-Simons gauge theories. In all cases the free energy in
the IR is smaller than in the UV, consistent with the F-theorem. We discuss
other odd-dimensional Euclidean theories on S^d and provide evidence that
(-1)^{(d-1)/2} \log |Z| decreases along RG flow; in the particular case d=1
this is the well-known g-theorem.Comment: 34 pages, 2 figures; v2 refs added, minor improvements; v3 refs
added, improved section 4.3; v4 minor improvement
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