PhD jobs: Revamp funding structures

This is the author accepted manuscript. The final version is available from Nature Publishing Group via the DOI in this record.CORRESPONDENC

How many can you catch? Factors influencing the occurrence of multi-prey loading in provisioning Greater Crested Terns

This is the author accepted manuscript. The final version is available from the publisher via the DOI in this record.Seabirds use several methods to transport food to their chicks; most species carry food in their stomachs or crops, but some terns and auks carry prey in their bills. Terns usually only carry one prey item at a time, limiting the rate at which they can provision their chicks, and restricting their effective foraging range. However, some terns do occasionally carry multiple prey, which should offer a selective advantage, but there are very few studies investigating the factors influencing the occurrence of multi-prey loading. We investigated the occurrence of multi-prey loads in provisioning Greater Crested Terns (Swift Tern) Thalasseus bergii bergii breeding on Robben Island, South Africa. Of 24 173 loads photographed, 1.3% comprised multiple prey items. Up to 11 fish were carried at once, but most multi-prey loads contained two Anchovies Engraulis encrasicolus, the most common prey item for this population of terns. Mixed species prey were recorded for the first time in a tern. Multi-prey loads occurred more frequently during mid- and late-provisioning, presumably because large chicks can cope with multiple prey, and have higher energetic requirements than small chicks. Mean standard length of Anchovies in multi-prey prey loads was less than Anchovies in single loads, possibly suggesting terns compensate for smaller prey sizes by bringing multiple prey back to their chick. The orientation of multiple Anchovies in a tern’s bill tended to be the same, suggesting that they were captured from polarised fish schools. At least some multi-prey loads were caught in a single dive.Our research was supported by a Department of Science and Technology–National Research Foundation grant to the Centre of Excellence at the FitzPatrick Institute of African Ornithology, the Leiden Conservation Foundation (RBS) and our institutes. SANParks and Robben Island Museum provided logistical support and access to the tern colonies. This research was approved by SANParks (CONM1182), the Department of Environmental Affairs (RES2013/24, RES2014/83 and RES2015/65) and the animal ethics committee of the University of Cape Town (2013/V3/TC)

Dietary studies in birds: testing a non-invasive method using digital photography in seabirds

This is the author accepted manuscript. The final version is available from Wiley via the DOI in this record.© 2016 The Authors. Methods in Ecology and Evolution © 2016 British Ecological Society Dietary studies give vital insights into foraging behaviour, with implications for understanding changing environmental conditions and the anthropogenic impacts on natural resources. Traditional diet sampling methods may be invasive or subject to biases, so developing non-invasive and unbiased methods applicable to a diversity of species is essential. We used digital photography to investigate the diet fed to chicks of a prey-carrying seabird and compared our approach (photo-sampling) to a traditional method (regurgitations) for the greater crested tern Thalasseus bergii. Over three breeding seasons, we identified > 24 000 prey items of at least 48 different species, more than doubling the known diversity of prey taken by this population of terns. We present a method to estimate the length of the main prey species (anchovy Engraulis encrasicolus) from photographs, with an accuracy < 1 mm and precision ~ 0·5 mm. Compared to regurgitations at two colonies, photo-sampling produced similar estimates of prey composition and size, at a faster species accumulation rate. The prey compositions collected by two researchers photo-sampling concurrently were also similar. Photo-sampling offers a non-invasive tool to accurately and efficiently investigate the diet composition and prey size of prey-carrying birds. It reduces biases associated with observer-based studies and is simple to use. This methodology provides a novel tool to aid conservation and management decision-making in the light of the growing need to assess environmental and anthropogenic change in natural ecosystems.Department of Science and Technology-Centre of Excellence Gran

A framework for studying ecological energy in the contemporary marine environment

This is the final version. Available from Oxford University Press via the DOI in this record. Data availability statement: No datasets were used in this reviewHistoric limitations have resulted in marine ecological studies usually overlooking some well-established concepts from behavioural ecology. This is likely because the methods available were easily overwhelmed by the scale of ecological processes and sampling resolution in the marine environment. Innovations in technology, data management, and statistical modelling now provide the capacity to fully embrace behavioural ecology concepts and study marine ecological interactions from a more holistic perspective. To facilitate this vision, we propose a novel perspective and workflow for marine ecology: the Seascape of Ecological Energy, or SEE-scapes. SEE-scapes contextualizes the accumulated knowledge from marine biology and behavioural ecology research and provides a guide for marine scientists interested in grounding their research in behavioural ecology's first principles. SEE-scapes specifies relevant considerations for contemporary seascapes, with special attention to relationships between individuals and their conspecifics, competitors, predators, and the abiotic environment. It is formulated to account for how the unique features of marine vertebrates require revisions to standard, terrestrially focused methodological approaches, and offers solutions for how to sample and model the eco-evolutionary drivers of behaviour across the dynamic and hierarchical seascape. Simply put, SEE-scapes provides the guidance to translate a dynamic system and reveal opportunities for collaborative and integrative research.Pew Charitable Trust

Bottom-up effects of a no-take zone on endangered penguin demographics.

This is the author accepted manuscript. The final version is available from The Royal Society via the DOI in this record.Marine no-take zones can have positive impacts for target species and are increasingly important management tools. However, whether they indirectly benefit higher order predators remains unclear. The endangered African penguin (Spheniscus demersus) depends on commercially exploited forage fish. We examined how chick survival responded to an experimental 3-year fishery closure around Robben Island, South Africa, controlling for variation in prey biomass and fishery catches. Chick survival increased by 18% when the closure was initiated, which alone led to a predicted 27% higher population compared with continued fishing. However, the modelled population continued to decline, probably because of high adult mortality linked to poor prey availability over larger spatial scales. Our results illustrate that small no-take zones can have bottom-up benefits for highly mobile marine predators, but are only one component of holistic, ecosystem-based management regimes.We thank the Earthwatch Institute, Bristol Zoological Society, Leiden Conservation Foundation and National Research Foundation

Vulnerability of northern gannets to offshore wind farms; seasonal and sex-specific collision risk and demographic consequences

There is a pressing need to quantify the risks of renewable energy developments such as offshore wind farms for protected populations. However, assessments are often based on incomplete data, or fail to consider variation in risk between sexes and at different times of year. We tracked northern gannets foraging from the world's largest colony (Bass Rock, Scotland) across five consecutive breeding seasons. We examine how seasonal and sex differences in behaviour affect the collision risk from planned and operational wind farms within their foraging range and assess the likely consequences for long-term population viability. Both sexes made shorter trips during chick-rearing than prior to chick-hatching, spent a greater proportion of time within wind farm sites and had an eight times greater potential collision risk during chick-rearing. Females made longer trips than males at both these times of year, flew higher and spent more time within wind farm sites, leading to three times greater collision risk for females. After accounting for the potential additional mortality from collisions, and assuming that the death of a parent also led to the loss of its offspring, the breeding population was projected to increase by 3.57% (95% CI: 2.16–5.15%) per year, compared with 6.56% (95% CI: 4.59–8.73%) in the absence of turbines, suggesting a negligible effect on population viability. However, additional mortality could result in greater immigration from neighbouring colonies, potentially affecting their viability and highlighting a need for research within a metapopulation framework to assess the impacts of offshore wind developments on vulnerable species across multiple connected sites

Seabird species vary in behavioural response to drone census

This is the final version of the article. Available from the publisher via the DOI in this record.Unmanned aerial vehicles (UAVs) provide an opportunity to rapidly census wildlife in remote areas while removing some of the hazards. However, wildlife may respond negatively to the UAVs, thereby skewing counts. We surveyed four species of Arctic cliff-nesting seabirds (glaucous gull Larus hyperboreus, Iceland gull Larus glaucoides, common murre Uria aalge and thick-billed murre Uria lomvia) using a UAV and compared censusing techniques to ground photography. An average of 8.5% of murres flew off in response to the UAV, but >99% of those birds were non-breeders. We were unable to detect any impact of the UAV on breeding success of murres, except at a site where aerial predators were abundant and several birds lost their eggs to predators following UAV flights. Furthermore, we found little evidence for habituation by murres to the UAV. Most gulls flew off in response to the UAV, but returned to the nest within five minutes. Counts of gull nests and adults were similar between UAV and ground photography, however the UAV detected up to 52.4% more chicks because chicks were camouflaged and invisible to ground observers. UAVs provide a less hazardous and potentially more accurate method for surveying wildlife. We provide some simple recommendations for their use.We thank T. Leonard and the Seabird Ecological Reserves Advisory Committee for permission to work at Witless Bay, the Canadian Wildlife Service for permits to work at Newfoundland and Nunavut and the Government of Nunavut for permits to work in Nunavut. Newfoundland and Labrador Murre Fund, Bird Studies Canada and the Molson Foundation directly funded the work. An NSERC Discovery Grant, the Canada Research Chair in Arctic Ecology and Polar Continental Shelf Project also helped fund the project. We thank T. Burke, G. Sorenson, T. Lazarus and M. Guigueno for their help and J. Nakoolak for keeping us safe from bear

Defining ecologically relevant scales for spatial protection with long-term data on an endangered seabird and local prey availability

This is the author accepted manuscript. The final version is available from Wiley via the DOI in this record.Human activities are important drivers of marine ecosystem functioning. However, separating the synergistic effects of fishing and environmental variability on the prey base of nontarget predators is difficult, often because prey availability estimates on appropriate scales are lacking. Understandi ng how prey abundance at different spatial scales links to population change can help integrate the needs of nontarget predators into fisheries management by defining ecologically relevant areas for spatial protection. We investigated the local population response (number of breeders) of the Bank Cormorant (Phalacrocorax neglectus), a range-restricted endangered seabird, to the availability of its prey, the heavily fished west coast rock lobster (Jasus lalandii). Using Bayesian state-space modeled cormorant counts at 3 colonies, 22 years of fisheries-independent data on local lobster abundance, and generalized additive modeling, we determined the spatial scale pertinent to these relationships in areas with different lobster availability. Cormorant numbers responded positively to lobster availability in the regions with intermediate and high abundance but not where regime shifts and fishing pressure had depleted lobster stocks. The relationships were strongest when lobsters 20–30 km offshore of the colony were considered, a distance greater than the Bank Cormorant's foraging range when breeding, and may have been influenced by prey availability for nonbreeding birds, prey switching, or prey ecology. Our results highlight the importance of considering the scale of ecological relationships in marine spatial planning and suggest that designing spatial protection around focal species can benefit marine predators across their full life cycle. We propose the precautionary implementation of small-scale marine protected areas, followed by robust assessment and adaptive-management, to confirm population-level benefits for the cormorants, their prey, and the wider ecosystem, without negative impacts on local fisheries.The National Research Foundation (NRF) SEAChange Grant 79735 and an incentive grant to R.J.M.C., Leiden Conservation Foundation, Claude Leon Foundation, and our institutions provided funding

Parenting in a warming world: thermoregulatory responses to heat stress in an endangered seabird

This is the final version. Available on open access from Oxford University Press via the DOI in this recordThe frequency of extreme weather events, including heat waves, is increasing with climate change. The thermoregulatory demands resulting from hotter weather can have catastrophic impacts on animals, leading to mass mortalities. Although less dramatic, animals also experience physiological costs below, but approaching, critical temperature thresholds. These costs may be particularly constraining during reproduction, when parents must balance thermoregulation against breeding activities. Such challenges should be acute among seabirds, which often nest in locations exposed to high solar radiation and predation risk. The globally endangered bank cormorant Phalacrocorax neglectus breeds in southern Africa in the winter, giving little scope for poleward or phenological shifts in the face of increasing temperatures. Physiological studies of endangered species sensitive to human disturbance, like the bank cormorant, are challenging, because individuals cannot be captured for experimental research. Using a novel, non-invasive, videographic approach, we investigated the thermoregulatory responses of this seabird across a range of environmental temperatures at three nesting colonies. The time birds spent gular fluttering, a behaviour enhancing evaporative heat loss, increased with temperature. Crouching or standing birds spent considerably less time gular fluttering than birds sitting on nests (ca 30% less at 22°C), showing that postural adjustments mediate exposure to heat stress and enhance water conservation. Crouching or standing, however, increases the vulnerability of eggs and chicks to suboptimal temperatures and/or expose nest contents to predation, suggesting that parents may trade-off thermoregulatory demands against offspring survival. We modelled thermoregulatory responses under future climate scenarios and found that nest-bound bank cormorants will gular flutter almost continuously for several hours a day by 2100. The associated increase in water loss may lead to dehydration, forcing birds to prioritize survival over breeding, a trade-off that would ultimately deteriorate the conservation status of this species.National Research FoundationDST-NRF Centre of Excellence fund at the FitzPatrick Institute of African OrnithologyLeiden Conservation Foundatio

Urofaecal glucocorticoid metabolite concentrations in African penguin (Spheniscus demersus) chick populations experiencing different levels of human disturbance

This is the final version. Available on open access from Oxford University Press via the DOI in this recordDespite the importance of ecotourism in species conservation, little is known about the industry’s effects on wildlife. In South Africa, some African penguin (Spheniscus demersus) colonies have become tourist attractions. The species is globally endangered, with population sizes decreasing over the past 40 years. As African penguin chicks are altricial and unable to move away from anthropogenic stressors, it is important to evaluate the effect of tourist activities on baseline glucocorticoid levels as a measure of potential disturbance. Chicks at three study sites within two breeding colonies (Robben Island, Stony Point), with varying levels of exposure to tourism (low/moderate/high) were monitored. Urofaecal samples were collected to determine urofaecal glucocorticoid metabolite (ufGCM) concentrations as an indication of baseline stress physiology. Morphometric measurements were taken to compare body condition between sites. Penguin chicks experiencing low, infrequent human presence had significantly higher mean (± standard deviation) ufGCM levels [1.34 ± 1.70 μg/g dry weight (DW)] compared to chicks experiencing both medium (0.50 ± 0.40 μg/g DW, P = 0.001) and high levels of human presence (0.57 ± 0.47 μg/g DW, P = 0.003). There was no difference in chick body condition across sites. These results suggest that exposure to frequent human activity may induce habituation/desensitization in African penguin chicks. Acute, infrequent human presence was likely an important driver for comparatively higher ufGCM levels in chicks, though several other environmental stressors may also play an important role in driving adrenocortical activity. Nevertheless, as unhabituated chicks experiencing infrequent anthropogenic presence showed significantly higher ufGCM levels, managers and legislation should attempt to minimize all forms of activity around important breeding colonies that are not already exposed to regular tourism. Although the results of this study are crucial for developing enhanced conservation and management protocols, additional research on the long-term effect of anthropogenic activities on African penguin physiology is required.Department of Biodiversity and Conservation Biology at the University of the Western CapeSouth African National Research FoundationEarthwatch Institut