Topological defects in 1D elastic waves

It has been recently shown theoretically that a topological defect in a 1D periodic potential may give rise to two localized states within the energy gaps. In this work we present an experimental realization of this effect for the case of torsional waves in elastic rods. We also show numerically that three, or even more, localized states can be present if the parameters characterizing the topological defect are suitably varied.Comment: 3 pages, 4 figures, accepted in Physica

Predicting substrate exchange in marine diatom-heterocystous cyanobacteria symbioses

In the open ocean, some phytoplankton establish symbiosis with cyanobacteria. Some partnerships involve diatoms as hosts and heterocystous cyanobacteria as symbionts. Heterocysts are specialized cells for nitrogen fixation, and a function of the symbiotic cyanobacteria is to provide the host with nitrogen. However, both partners are photosynthetic and capable of carbon fixation, and the possible metabolites exchanged and mechanisms of transfer are poorly understood. The symbiont cellular location varies from internal to partial to fully external, and this is reflected in the symbiont genome size and content. In order to identify the membrane transporters potentially involved in metabolite exchanges, we compare the draft genomes of three differently located symbionts with known transporters mainly from model free-living heterocystous cyanobacteria. The types and numbers of transporters are directly related to the symbiont cellular location: restricted in the endosymbionts and wider in the external symbiont. Three proposed models of metabolite exchanges are suggested which take into account the type of transporters in the symbionts and the influence of their cellular location on the available nutrient pools. These models provide a basis for several hypotheses that given the importance of these symbioses in global N and C budgets, warrant future testing. This article is protected by copyright. All rights reserved.España, Gobierno BFU2017-88202-

Experimental characterisation of the mechanical properties and microstructure of Acrocomia mexicana fruit from the Yucatan Peninsula in Mexico

A study of the mechanical properties and microstructure at different drying conditions of the Cocoyol fruit endocarp of Acrocomia Mexicana palm found in the Yucatan Peninsula in Mexico was performed. Quasi-static uniaxial compression was carried out on endocarp samples. The experimental results showed that the fruit exhibited an average peak force and displacement at failure of 4.23 kN and 2.43 mm, respectively. The average energy absorbed by the fruits before failure was 6.06 J. Optical and scanning electron microscopy of cross-sections of the equatorial region revealed that the endocarp has complex hierarchical structure. The micrographs showed that the structure is made of bundles of randomly oriented tubes and bubble-like cells, showing entangled network of hollow micro channels, which are in the order of tens of microns. The results and the microstructure presented herein encourage further research for bioinspired man-made materials.Australian Research Council (ARC) Centre of Excellence for Design in Light Metals (CE0561574). Consejo Nacional de Ciencia y Tecnologia, CONACyT (CB-2008-01, reg. 101608)

Adaptation to an Intracellular Lifestyle by a Nitrogen-Fixing, Heterocyst-Forming Cyanobacterial Endosymbiont of a Diatom

The symbiosis between the diatom Hemiaulus hauckii and the heterocyst-forming cyanobacterium Richelia intracellularis makes an important contribution to new production in the world’s oceans, but its study is limited by short-term survival in the laboratory. In this symbiosis, R. intracellularis fixes atmospheric dinitrogen in the heterocyst and provides H. hauckii with fixed nitrogen. Here, we conducted an electron microscopy study of H. hauckii and found that the filaments of the R. intracellularis symbiont, typically composed of one terminal heterocyst and three or four vegetative cells, are located in the diatom’s cytoplasm not enclosed by a host membrane. A second prokaryotic cell was also detected in the cytoplasm of H. hauckii, but observations were infrequent. The heterocysts of R. intracellularis differ from those of free-living heterocyst-forming cyanobacteria in that the specific components of the heterocyst envelope seem to be located in the periplasmic space instead of outside the outer membrane. This specialized arrangement of the heterocyst envelope and a possible association of the cyanobacterium with oxygen-respiring mitochondria may be important for protection of the nitrogen-fixing enzyme, nitrogenase, from photosynthetically produced oxygen. The cell envelope of the vegetative cells of R. intracellularis contained numerous membrane vesicles that resemble the outer-inner membrane vesicles of Gram-negative bacteria. These vesicles can export cytoplasmic material from the bacterial cell and, therefore, may represent a vehicle for transfer of fixed nitrogen from R. intracellularis to the diatom’s cytoplasm. The specific morphological features of R. intracellularis described here, together with its known streamlined genome, likely represent specific adaptations of this cyanobacterium to an intracellular lifestyle

What fraction of stars formed in infrared galaxies at high redshift?

Star formation happens in two types of environment: ultraviolet-bright starbursts (like 30 Doradus and HII galaxies at low redshift and Lyman-break galaxies at high redshift) and infrared-bright dust-enshrouded regions (which may be moderately star-forming like Orion in the Galaxy or extreme like the core of Arp 220). In this work I will estimate how many of the stars in the local Universe formed in each type of environment, using observations of star-forming galaxies at all redshifts at different wavelengths and of the evolution of the field galaxy population.Comment: 7 pages, 0 figs, to appear in proceedings of "Starbursts - From 30 Doradus to Lyman break galaxies", edited by Richard de Grijs and Rosa M. Gonzalez Delgado, published by Kluwe

Intrinsic decoherence and classical-quantum correspondence in two coupled delta-kicked rotors

We show that classical-quantum correspondence of center of mass motion in two coupled delta-kicked rotors can be obtained from intrinsic decoherence of the system itself which occurs due to the entanglement of the center of mass motion to the internal degree of freedom without coupling to external environment

Metal-insulator transition in one-dimensional lattices with chaotic energy sequences

We study electronic transport through a one-dimensional array of sites by using a tight binding Hamiltonian, whose site-energies are drawn from a chaotic sequence. The correlation degree between these energies is controlled by a parameter regulating the dynamic Lyapunov exponent measuring the degree of chaos. We observe the effect of chaotic sequences on the localization length, conductance, conductance distribution and wave function, finding evidence of a Metal-Insulator Transition (MIT) at a critical degree of chaos. The one-dimensional metallic phase is characterized by a Gaussian conductance distribution and exhibits a peculiar non-selfaveraging.Comment: 5 pages, 5 figures (one figure replaced). Includes new results and a few additional references. Improved style for publication. Accepted in Physics Letters

On the emergent Semantic Web and overlooked issues

The emergent Semantic Web, despite being in its infancy, has already received a lotof attention from academia and industry. This resulted in an abundance of prototype systems and discussion most of which are centred around the underlying infrastructure. However, when we critically review the work done to date we realise that there is little discussion with respect to the vision of the Semantic Web. In particular, there is an observed dearth of discussion on how to deliver knowledge sharing in an environment such as the Semantic Web in effective and efficient manners. There are a lot of overlooked issues, associated with agents and trust to hidden assumptions made with respect to knowledge representation and robust reasoning in a distributed environment. These issues could potentially hinder further development if not considered at the early stages of designing Semantic Web systems. In this perspectives paper, we aim to help engineers and practitioners of the Semantic Web by raising awareness of these issues

ICTV Virus Taxonomy Profile: Avsunviroidae

[EN] Members of the family Avsunviroidae have a single-stranded circular RNA genome that adopts a rod-like or branched conformation and can form, in the strands of either polarity, hammerhead ribozymes involved in their replication in plastids through a symmetrical RNA-RNA rolling-circle mechanism. These viroids lack the central conserved region typical of members of the family Pospiviroidae. The family Avsunviroidae includes three genera, Avsunviroid, Pelamoviroid and Elaviroid, with a total of four species. This is a summary of the ICTV Report on the taxonomy of the family Avsunviroidae, which is available at /http:/www.ictv.global/report/avsunvirodae.Production of this summary, the online chapter and associated resources was funded by a grant from the Wellcome Trust (WT108418AIA).Di Serio, F.; Li, S.; Matousek, J.; Owens, R.; Pallás Benet, V.; Randles, J.; Sano, T.... (2018). ICTV Virus Taxonomy Profile: Avsunviroidae. Journal of General Virology. 99(5):611-612. https://doi.org/10.1099/jgv.0.001045S611612995Flores, R., Daròs, J.-A., & Hernández, C. (2000). Avsunviroidae family: Viroids containing hammerhead ribozymes. Advances in Virus Research, 271-323. doi:10.1016/s0065-3527(00)55006-4Hutchins, C. J., Rathjen, P. D., Forster, A. C., & Symons, R. H. (1986). Self-cleavage of plus and minus RNA transcripts of avocado sunblotch viroid. Nucleic Acids Research, 14(9), 3627-3640. doi:10.1093/nar/14.9.3627Kuhn, D. N., Geering, A. D. W., & Dixon, J. (2017). Avocado Sunblotch Viroid. Viroids and Satellites, 297-305. doi:10.1016/b978-0-12-801498-1.00028-0FLORES, R., DELGADO, S., RODIO, M.-E., AMBRÓS, S., HERNÁNDEZ, C., & SERIO, F. D. (2006). Peach latent mosaic viroid: not so latent. Molecular Plant Pathology, 7(4), 209-221. doi:10.1111/j.1364-3703.2006.00332.xFlores, R., Gago-Zachert, S., Serra, P., De la Peña, M., & Navarro, B. (2017). Chrysanthemum Chlorotic Mottle Viroid. Viroids and Satellites, 331-338. doi:10.1016/b978-0-12-801498-1.00031-0Daròs, J.-A. (2016). Eggplant latent viroid: a friendly experimental system in the familyAvsunviroidae. Molecular Plant Pathology, 17(8), 1170-1177. doi:10.1111/mpp.12358Dufour, D., de la Peña, M., Gago, S., Flores, R., & Gallego, J. (2008). Structure–function analysis of the ribozymes of chrysanthemum chlorotic mottle viroid: a loop–loop interaction motif conserved in most natural hammerheads. Nucleic Acids Research, 37(2), 368-381. doi:10.1093/nar/gkn91

Osmotic stress tolerance in forage oat varieties (Avena Sativa L.) based on osmotic potential trials

Received: April 1st, 2022 ; Accepted: December 12th, 2022 ; Published: February 7th, 2023 ; Correspondence: [email protected]; [email protected] oats (Avena sativa L.) are globally important for milk and meat production, and, to a lesser extent, for the human diet. In Mexico, oats are a strategic crop, occupying the fourth place in cultivated area, only after maize for grain, bean, and sorghum for grain. Droughts are the main problem for oat production in Mexico. This study evaluated the germination and seedling growth of several oat varieties in response to drought stress simulated by PEG-6000 treatments of different osmotic pressure in order to identify drought-resistant genotypes. The Teporaca genotype was the most outstanding in the three levels of OP compared to its control with 0.0 of Osmotic Potential (OP). The Teporaca genotype showed the largest root length and the lowest diminishment of root length under osmotic stress conditions. This genotype also had the largest shoot length in the three osmotic stress levels. Regarding root fresh weight, Babicora stands out with 98.5% and Teporaca with 43% in the most severe level. Teporaca, Menonita, and Babicora showed the outstanding root dry weights of 346.5%, 327.2%, and 251.2%, respectively. These varieties had higher root dry weight than their own controls in water in the most severe level of OP. In conclusion, the Teporaca, Menonita, and Karma genotypes showed the highest osmotic stress tolerance and could be used as sources of favorable alleles to improve oat drought tolerance