Investigations of the lower and middle atmosphere at the Arecibo Observatory and a description of the new VHF radar project

The atmospheric science research at the Arecibo Observatory is performed by means of (active) radar methods and (passive) optical methods. The active methods utilize the 430 NHz radar, the S-band radar on 2380 MHz, and a recently constructed Very High Frequency (VHF) radar. The passive methods include measurements of the mesopause temperature by observing the rotational emissions from OH-bands. The VHF radar design is discussed

Method to determine the optimal parameters of the Arecibo 46.8-MHz antenna system

The spherical reflector at the Arecibo Observatory (AO) offers great advantages for the design of simple and inexpensive high performance steerable antennas at VHF. Light and small feeds have the added benefit that they can be quickly installed in the Arecibo platform. It is important to evaluate the performance of any given feed including the effects of the spherical reflector. The optimization is emphasized of two parameters, namely, the distance below the focal point of the reflector and the beam width of a point feed. For the design of the feed at 46.8 MHz at the AO there were other requirements independent of MST (mesosphere stratosphere troposphere) work. The design of the primary array is discussed along with its performance with the AO spherical reflector

CoryneRegNet 6.0—Updated database content, new analysis methods and novel features focusing on community demands

Post-genomic analysis techniques such as next-generation sequencing have produced vast amounts of data about micro organisms including genetic sequences, their functional annotations and gene regulatory interactions. The latter are genetic mechanisms that control a cell's characteristics, for instance, pathogenicity as well as survival and reproduction strategies. CoryneRegNet is the reference database and analysis platform for corynebacterial gene regulatory networks. In this article we introduce the updated version 6.0 of CoryneRegNet and describe the updated database content which includes, 6352 corynebacterial regulatory interactions compared with 4928 interactions in release 5.0 and 3235 regulations in release 4.0, respectively. We also demonstrate how we support the community by integrating analysis and visualization features for transiently imported custom data, such as gene regulatory interactions. Furthermore, with release 6.0, we provide easy-to-use functions that allow the user to submit data for persistent storage with the CoryneRegNet database. Thus, it offers important options to its users in terms of community demands. CoryneRegNet is publicly available at http://www.coryneregnet.de

Quantitative estimates of relationships between geomagnetic activity and equatorial spread-F as determined by TID occurrence levels

Using a world-wide set of stations for 15 years, quantitative estimates of changes to equatorial spread-F (ESF) occurrence rates obtained from ionogram scalings, have been determined for a range of geomagnetic activity (GA) levels, as well as for four different levels of solar activity. Average occurrence rates were used as a reference. The percentage changes vary significantly depending on these subdivisions. For example for very high GA the inverse association is recorded by a change of -33% for R-z greater than or equal to 150, and -10% for R-z < 50. Using data for 9 years for the equatorial station, Huancayo, these measurements of ESF which indicate the presence of TIDs, have also been investigated by somewhat similar analyses. Additional parameters were used which involved the local times of GA, with the ESF being examined separately for occurrence pre-midnight (PM) and after-midnight (AM). Again the negative changes were most pronounced for high GA in R-z-max years (-21%). This result is for PM ESF for GA at a local time of 1700. There were increased ESF levels (+31%) for AM ESF in R-z-min years for high GA around 2300 LT. This additional knowledge of the influence of GA on ESF occurrence involving not only percentage changes, but these values for a range of parameter levels, may be useful if ever short-term forecasts are needed. There is some discussion on comparisons which can be made between ESF results obtained by coherent scatter from incoherent-scatter equipment and those obtained by ionosondes

How little do we actually know? On the size of gene regulatory networks

The National Center for Biotechnology Information (NCBI) recently announced the availability of whole genome sequences for more than 1,000 species. And the number of sequenced individual organisms is growing. Ongoing improvement of DNA sequencing technology will further contribute to this, enabling large-scale evolution and population genetics studies. However, the availability of sequence information is only the first step in understanding how cells survive, reproduce, and adjust their behavior. The genetic control behind organized development and adaptation of complex organisms still remains widely undetermined. One major molecular control mechanism is transcriptional gene regulation. The direct juxtaposition of the total number of sequenced species to the handful of model organisms with known regulations is surprising. Here, we investigate how little we even know about these model organisms. We aim to predict the sizes of the whole-organism regulatory networks of seven species. In particular, we provide statistical lower bounds for the expected number of regulations. For Escherichia coli we estimate at most 37 percent of the expected gene regulatory interactions to be already discovered, 24 percent for Bacillus subtilis, and <3% human, respectively. We conclude that even for our best researched model organisms we still lack substantial understanding of fundamental molecular control mechanisms, at least on a large scale