Using bijective maps to improve free energy estimates

We derive a fluctuation theorem for generalized work distributions, related to bijective mappings of the phase spaces of two physical systems, and use it to derive a two-sided constraint maximum likelihood estimator of their free energy difference which uses samples from the equilibrium configurations of both systems. As an application, we evaluate the chemical potential of a dense Lennard-Jones fluid and study the construction and performance of suitable maps.Comment: 17 pages, 11 figure

StemNet: An Evolving Service for Knowledge Networking in the Life Sciences

Up until now, crucial life science information resources, whether bibliographic or factual databases, are isolated from each other. Moreover, semantic metadata intended to structure their contents is supplied in a manual form only. In the StemNet project we aim at developing a framework for semantic interoperability for these resources. This will facilitate the extraction of relevant information from textual sources and the generation of semantic metadata in a fully automatic manner. In this way, (from a computational perspective) unstructured life science documents are linked to structured biological fact databases, in particular to the identifiers of genes, proteins, etc. Thus, life scientists will be able to seamlessly access information from a homogeneous platform, despite the fact that the original information was unlinked and scattered over the whole variety of heterogeneous life science information resources and, therefore, almost inaccessible for integrated systematic search by academic, clinical, or industrial users

Third generation sfermions decays into Z and W gauge bosons: full one-loop analysis

The complete one-loop radiative corrections to third generation scalar fermions into gauge bosons Z and W^\pm is considered. We focus on \wt{f}_2 \to Z \wt{f}_1 and \wt{f}_i \to W^\pm \wt{f'}_j (f,f'=t,b). We include both SUSY-QCD, QED and full electroweak corrections. It is found that the electroweak corrections can be of the same order as the SUSY-QCD corrections. The two sets of corrections interfere destructively in some region of parameter space. The full one loop correction can reach 10% in some SUGRA scenario, while in model independent analysis like general MSSM, the one loop correction can reach 20% for large \tan\beta and large trilinear soft breaking terms A_b.Comment: Latex file, 18 pages, 8 figures, version to appear in PR

Multi-excitonic complexes in single InGaN quantum dots

Cathodoluminescence spectra employing a shadow mask technique of InGaN layers grown by metal organic chemical vapor deposition on Si(111) substrates are reported. Sharp lines originating from InGaN quantum dots are observed. Temperature dependent measurements reveal thermally induced carrier redistribution between the quantum dots. Spectral diffusion is observed and was used as a tool to correlate up to three lines that originate from the same quantum dot. Variation of excitation density leads to identification of exciton and biexciton. Binding and anti-binding complexes are discovered.Comment: 3 pages, 4 figure

Parametric LTL on Markov Chains

This paper is concerned with the verification of finite Markov chains against parametrized LTL (pLTL) formulas. In pLTL, the until-modality is equipped with a bound that contains variables; e.g., $\Diamond_{\le x}\ \varphi$ asserts that $\varphi$ holds within $x$ time steps, where $x$ is a variable on natural numbers. The central problem studied in this paper is to determine the set of parameter valuations $V_{\prec p} (\varphi)$ for which the probability to satisfy pLTL-formula $\varphi$ in a Markov chain meets a given threshold $\prec p$, where $\prec$ is a comparison on reals and $p$ a probability. As for pLTL determining the emptiness of $V_{> 0}(\varphi)$ is undecidable, we consider several logic fragments. We consider parametric reachability properties, a sub-logic of pLTL restricted to next and $\Diamond_{\le x}$, parametric B\"uchi properties and finally, a maximal subclass of pLTL for which emptiness of $V_{> 0}(\varphi)$ is decidable.Comment: TCS Track B 201

Limits on nu_e and anti-nu_e disappearance from Gallium and reactor experiments

The deficit observed in the Gallium radioactive source experiments is interpreted as a possible indication of the disappearance of electron neutrinos. In the effective framework of two-neutrino mixing we obtain $\sin^{2}2\vartheta \gtrsim 0.03$ and $\Delta{m}^{2} \gtrsim 0.1 \text{eV}^{2}$. The compatibility of this result with the data of the Bugey and Chooz reactor short-baseline antineutrino disappearance experiments is studied. It is found that the Bugey data present a hint of neutrino oscillations with $0.02 \lesssim \sin^{2}2\vartheta \lesssim 0.08$ and $\Delta{m}^{2} \approx 1.8 \text{eV}^{2}$, which is compatible with the Gallium allowed region of the mixing parameters. This hint persists in the combined analyses of Bugey and Chooz data, of Gallium and Bugey data, and of Gallium, Bugey, and Chooz data.Comment: 21 pages. Final version to be published in Phys. Rev.

Rare Decay of the Top t -> cgg in the Standard Model

We calculate the one-loop flavor changing neutral current top quark decay t -> cgg in the Standard Model. We demonstrate that the rate for t -> cgg exceeds the rate for a single gluon emission t -> cg by about two orders of magnitude, while the rate for t -> cq barq (q=u) is slightly smaller than for t -> cg.Comment: 22 pages, 4 figures and 2 tables. Typo in Eq.2.1 corrected, text slightly modified, references added. Version to appear in Phys.Rev.

Bone mineral content after renal transplantation

Forearm bone mineral content (BMC), as evaluated by photonabsorption densitometry, was measured in 28 cadaver kidney donor recipients who entered the study 8 weeks postoperatively and were followed up for 18 months. BMC decreased signifiantly (p<0.05) but marginally in placebo-treated patients (n=14) (initial BMC 1.09±0.25 g/cm; final BMC 1.05±0.24). Fourteen patients were prophylactically given 1,25(OH)2vitamin D3 in a dose which avoided hypercalcemia and hypercalciuria (sim0.25 µg/day); under 1,25(OH)2 vitamin D3 prophylaxis a significant decrease of forearm BMC was observed no longer (initial BMC 0.94±0.21 g/cm; final BMC 0.95±0.21), but the difference between placebo and 1,25(OH)2 vitamin D3 narrowly missed statistical significance (p=0.066). It is concluded that the decrease of forearm BMC is negligible in transplant recipients with low steroid regimens. The data suggest a trend for prophylaxis with 1,25(OH)2 vitamin D3 to slightly ameliorate forearm (cortical) BMC loss