Genetic effects on gene expression across human tissues

Characterization of the molecular function of the human genome and its variation across individuals is essential for identifying the cellular mechanisms that underlie human genetic traits and diseases. The Genotype-Tissue Expression (GTEx) project aims to characterize variation in gene expression levels across individuals and diverse tissues of the human body, many of which are not easily accessible. Here we describe genetic effects on gene expression levels across 44 human tissues. We find that local genetic variation affects gene expression levels for the majority of genes, and we further identify inter-chromosomal genetic effects for 93 genes and 112 loci. On the basis of the identified genetic effects, we characterize patterns of tissue specificity, compare local and distal effects, and evaluate the functional properties of the genetic effects. We also demonstrate that multi-tissue, multi-individual data can be used to identify genes and pathways affected by human disease-associated variation, enabling a mechanistic interpretation of gene regulation and the genetic basis of diseas

Genetic effects on gene expression across human tissues

Characterization of the molecular function of the human genome and its variation across individuals is essential for identifying the cellular mechanisms that underlie human genetic traits and diseases. The Genotype-Tissue Expression (GTEx) project aims to characterize variation in gene expression levels across individuals and diverse tissues of the human body, many of which are not easily accessible. Here we describe genetic effects on gene expression levels across 44 human tissues. We find that local genetic variation affects gene expression levels for the majority of genes, and we further identify inter-chromosomal genetic effects for 93 genes and 112 loci. On the basis of the identified genetic effects, we characterize patterns of tissue specificity, compare local and distal effects, and evaluate the functional properties of the genetic effects. We also demonstrate that multi-tissue, multi-individual data can be used to identify genes and pathways affected by human disease-associated variation, enabling a mechanistic interpretation of gene regulation and the genetic basis of disease

Redox control on the chromium distribution of tropical red soils revealed by Cr isotopes

International audienc

Redox control of chromium in the red soils from China evidenced by Cr stable isotopes

International audienceWith chromium isotopes, we study the intricate dynamics of adsorption and redox processes in soil ecosystems, focusing on chromium's behaviour, in red soil profiles enriched with iron-manganese nodules (FMNs) in South China. Key findings reveal that the primary geological source of chromium in the red soil profiles is the weathering of colluvium parent minerals. FMNs have higher chromium concentrations (325-1,451 µg/g) compared to surrounding soils (95-247 µg/g) and display stable δ53Cr values (0.78 ± 0.17‰), indicating their role as stable chromium repositories, reflecting historical processes. Furthermore, by isolating chromium associated with iron oxides (FeO) and silicate minerals (ReS) within FMNs and surrounding soils using CBD extractions, we show that FeO predominantly carry chromium, particularly in FMNs. The δ53Cr values of FeO fractions consistently exhibit heavier signatures than ReS fractions, suggesting the sequestration of isotopically heavy chromium (VI) during Fe oxide precipitation. Fluctuations in soil’s redox, rather than land use, play a pivotal role in controlling the precipitation of Fe oxides in surrounding soils and the formation of FMNs, thus influencing chromium mobility. This highlights the significance of these factors when utilizing chromium isotopic techniques for source tracking in soil systems, contributing to our understanding of chromium's behaviour in soil environments

Mobile Multiwavelength Polarization Raman Lidar for Water Vapor, Cloud and Aerosol Measurement

Aiming at the detection of water vapor mixing ratio, particle linear depolarization ratio, extinction coefficient and cloud information, the Water vapor, Cloud and Aerosol Lidar (WVCAL) was developed by the lidar group at Ocean University of China. The Lidar consists of transmitting subsystem, receiving subsystem, data acquisition and controlling subsystem and auxiliary subsystem. These parts were presented and described in this paper. For the measurement of various physical properties, three channels including Raman channel, polarization channel and infrared channel are integrated in this Lidar system. In this paper, the integration and working principle of these channels is introduced in details. Finally, a measurement example which was operated in coastal area-Qingdao, Shandong province, during 2014 is provided

Mobile Multiwavelength Polarization Raman Lidar for Water Vapor, Cloud and Aerosol Measurement

Aiming at the detection of water vapor mixing ratio, particle linear depolarization ratio, extinction coefficient and cloud information, the Water vapor, Cloud and Aerosol Lidar (WVCAL) was developed by the lidar group at Ocean University of China. The Lidar consists of transmitting subsystem, receiving subsystem, data acquisition and controlling subsystem and auxiliary subsystem. These parts were presented and described in this paper. For the measurement of various physical properties, three channels including Raman channel, polarization channel and infrared channel are integrated in this Lidar system. In this paper, the integration and working principle of these channels is introduced in details. Finally, a measurement example which was operated in coastal area-Qingdao, Shandong province, during 2014 is provided

Ion Transport Traversing Bioinspired Ion Channels at Bionic Interface

Ion transport is especially crucial in normal body function, which is regulated by specialized ion channels. In this report, the simple hydrophilic alumina nanochannel is constructed at liquid/liquid (L/L) interface to simulate veritably and compactly complex cross-channel ion transfer processes of living systems in a similar physiological saline environment. The selectivity and regulation that are known for being two important characteristics of ion channels were achieved due to controllable electrosurface properties of alumina nanochannel. This channel shows good selectivity for ion with low electronegativity. The regulatory role of ion channel in confined space was achieved by varying diameters of nanochannel and lengths of ions travel path. In addition, a new theory based on the Randles-Sevcik equation is proposed for evaluation of cross-channel ion transfer in this article for the first time. The ingenious design strategy is demonstrated to be a useful means for investigating the complex cross-channel ion transport

Compact high-power shipborne doppler lidar based on high spectral resolution techniques

The Compact High-Power Shipborne Doppler Wind Lidar (CHiPSDWiL) based on highspectral-resolution technique has been built up at the Ocean University of China for the measurement of the wind field and the properties of the aerosol and clouds in the troposphere. The design of the CHiPSDWiL including the transceiver, the injection seeding, the locking and the frequency measurement will be presented. Preliminary results measured by the CHiPSDWiL are provided

Selection of passerine birds as bio-sentinel of persistent organic pollutants in terrestrial environment

A broad suite of persistent organic pollutants (POPs), including polychlorinated biphenyls (PCBs), polybrominated diphenyl ethers (PBDEs), and dichlorodiphenyltrichloroethane (DDT) and its metabolites, were analyzed in pectoral muscle of eight terrestrial passerine bird species from an extensive e-waste recycling site in South China. Concentrations of PCBs, PBDEs, and DDTs in bird samples ranged from 1260-279,000, 121-14,200, and 31-7910 ng/g lipid weight, respectively. Insectivorous birds had significantly higher levels of PCBs, PBDEs, and DDTs than those in granivorous birds. Concentrations of POPs in resident insectivorous birds were significantly greater than those in migrant insectivorous birds. PCBs were the predominant pollutants in all bird species from the e-waste site, followed by PBDEs and DDTs, indicating that PCBs were mainly derived from e-wastes. The granivorous birds had higher proportions of hepta-CBs in total PCBs and higher proportions of octa-to deca-BDEs in total PBDEs compared with the insectivorous birds. The various dietary sources, migration behavior, and possible biotransformation were suspected as reasons of the distinct profiles of POPs in different bird species. The delta N-15 values were significantly and positively correlated with concentrations of POPs in resident insectivorous birds, but not in other passerine bird species, suggesting the influence of trophic levels on bioaccumulation of POPs in resident insectivorous birds. The resident insectivorous birds seem to be promising bio-sentinel of POPs in terrestrial environment around the e-waste sites. (C) 2018 Elsevier B.V. All rights reserved