Reproductibilité de l’évaluation de la fonction endothéliale cutanée par méthode laser mono-point et laser speckle chez l’homme

Objectifs.– La dysfonction endothéliale est la première étape conduisant à l’athérosclérose. La vasodilatation induite par l’acétylcholine (ACh) est un test spécifique de la fonction endothéliale. Plusieurs techniques comme la mesure du flux sanguin par Laser doppler Fluxmètre (LDF) et le Laser Speckle Contrast Imaging (LSCI) ont été développées afin de quantifier cette vasodilatation. Actuellement, la fiabilité de ces techniques et l’expression de leurs résultats sont à l’étude, ces derniers manquants de standardisation. Les objectifs de cette étude étaient d’évaluer à sept jours d’intervalle : – la reproductibilité de la mesure inter-sujets ; – la reproductibilité de la mesure intra-sujets ; – l’effet du mode d’expression des résultats sur la variabilité. Méthode.– Nous avons évalué deux protocoles d’iontophorèse d’ACh (stimulation unique, multiples stimulations) dont les réponses étaient mesurées simultanément par le LDF et le LSCI. Le maximum de la vasodilatation provoqué par l’ACh (pic d’ACh) a été exprimé sous forme de valeurs de conductance absolue ou en flux normalisé. La reproductibilité inter-sujets a été exprimée en coefficient de variation (inter-CV, %). La reproductibilité intra-sujet a été exprimée en coefficient de variation (intra-CV, %) et en coefficient de corrélation intra-classe (ICC). Quinze sujets sains âgés de 18 ans ou plus ont été inclus dans cette étude. Résultats.– La reproductibilité inter-sujets du pic d’ACh change en fonction de la manière d’exprimer les résultats et s’échelonne de 55 % à 162 % pour le LDF et de 17 % à 83 % pour le LSCI. La reproductibilité intra-sujet (Intra-CV/ICC) du pic d’ACh a été meilleure mesurée par le LSCI que par le LDF quels que soient le mode d’expression et le protocole utilisé. Les meilleures reproductibilités intra-sujets ont été obtenues avec le LSCI. Elles étaient de 18,7 %/0,87 (résultat exprimé en valeur absolue de conductance vasculaire cutanée) lors d’une stimulation unique et de 11,4 %/0,61 (résultat exprimé en valeur absolue) lors d’une multiple stimulation. Conclusion.– La iontophorèse d’ACh couplée au LSCI est un outil d’avenir afin d’accéder à la fonction endothéliale car elle est reproductible, non dangereuse et non invasive

Soil microbial communities with greater investment in resource acquisition have lower growth yield

Resource acquisition and growth yield are fundamental microbial traits that affect biogeochemical processes and have consequences for ecosystem functioning. However, there is a lack of empirical observations linking these traits. Using a landscape-scale survey of temperate near-neutral pH soils, we show tradeoffs in key community-level parameters linked to these traits. Increased investment into extracellular enzymes estimated using specific potential enzyme activity was associated with reduced growth yield obtained using carbon use efficiency measures from stable isotope tracing. Reduction in growth yield was linked more to carbon than nitrogen acquisition highlighting smaller stoichiometric than energetic constraints on community metabolism in examined soils

Soil fungal : Bacterial ratios are linked to altered carbon cycling

Acknowledgments We thank Steffen Ruehlow, Agnes Fastnacht, Karl Kuebler, Iris Kuhlmann, Heike Geilmann, and Petra Linke for technical support in establishing the experiment and with stable isotope analyses. We also thank Markus Lange, Daniel Read, and Hyun Gweon for helpful discussions. Funding AM has received funding from Max Planck Society and the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No 655240. AM has also received a career orientation grant from the Jena School for Microbial Communication (JSMC) that funded the laboratory visits. DFG SFB Aquadiva funded part of this work.Peer reviewedPublisher PD

Targeting serine hydroxymethyltransferases 1 and 2 for T-cell acute lymphoblastic leukemia therapy

Despite progress in the treatment of acute lymphoblastic leukemia (ALL), T-cell ALL (T-ALL) has limited treatment options, particularly in the setting of relapsed/refractory disease. Using an unbiased genome-scale CRISPR-Cas9 screen we sought to identify pathway dependencies for T-ALL which could be harnessed for therapy development. Disruption of the one-carbon folate, purine and pyrimidine pathways scored as the top metabolic pathways required for T-ALL proliferation. We used a recently developed inhibitor of SHMT1 and SHMT2, RZ-2994, to characterize the effect of inhibiting these enzymes of the one-carbon folate pathway in T-ALL and found that T-ALL cell lines were differentially sensitive to RZ-2994, with the drug inducing a S/G2 cell cycle arrest. The effects of SHMT1/2 inhibition were rescued by formate supplementation. Loss of both SHMT1 and SHMT2 was necessary for impaired growth and cell cycle arrest, with suppression of both SHMT1 and SHMT2 inhibiting leukemia progression in vivo. RZ-2994 also decreased leukemia burden in vivo and remained effective in the setting of methotrexate resistance in vitro. This study highlights the significance of the one-carbon folate pathway in T-ALL and supports further development of SHMT inhibitors for treatment of T-ALL and other cancers

Analyzing the composition of cities using spatial clustering

Cities all around the world are in constant evolution due to numerous factors, such as fast urbanization and new ways of communication and transportation. Since understanding the composition of cities is the key to intelligent urbanization, there is a growing need to develop urban computing and analysis tools to guide the orderly development of cities, as well as to enhance their smooth and beneficiary evolution. This paper presents a spatial clustering approach to discover interesting regions and regions which serve different functions in cities. Spatial clustering groups the objects in a spatial dataset and identifies contiguous regions in the space of the spatial attributes. We formally define the task of finding uniform regions in spatial data as a maximization problem of a plug-in measure of uniformity and introduce a prototype-based clustering algorithm named CLEVER to find such regions. Moreover, polygon models which capture the scope of a spatial cluster and histogram-style distribution signatures are used to annotate the content of a spatial cluster in the proposed methodology; they play a key role in summarizing the composition of a spatial dataset. Furthermore, algorithms for identifying popular distribution signatures and approaches for identifying regions which express a particular distribution signature will be presented. The proposed methodology is demonstrated and evaluated in a challenging real-world case study centering on analyzing the composition of the city of Strasbourg in France

Targeting BTK for the treatment of FLT3-ITD mutated acute myeloid leukemia

Approximately 20% of patients with acute myeloid leukaemia (AML) have a mutation in FMS-like-tyrosine-kinase-3 (FLT3). FLT3 is a trans-membrane receptor with a tyrosine kinase domain which, when activated, initiates a cascade of phosphorylated proteins including the SRC family of kinases. Recently our group and others have shown that pharmacologic inhibition and genetic knockdown of Bruton's tyrosine kinase (BTK) blocks AML blast proliferation, leukaemic cell adhesion to bone marrow stromal cells as well as migration of AML blasts. The anti-proliferative effects of BTK inhibition in human AML are mediated via inhibition of downstream NF-κB pro-survival signalling however the upstream drivers of BTK activation in human AML have yet to be fully characterised. Here we place the FLT3-ITD upstream of BTK in AML and show that the BTK inhibitor ibrutinib inhibits the survival and proliferation of FLT3-ITD primary AML blasts and AML cell lines. Furthermore ibrutinib inhibits the activation of downstream kinases including MAPK, AKT and STAT5. In addition we show that BTK RNAi inhibits proliferation of FLT3-ITD AML cells. Finally we report that ibrutinib reverses the cyto-protective role of BMSC on FLT3-ITD AML survival. These results argue for the evaluation of ibrutinib in patients with FLT3-ITD mutated AML

Reproducibility of Non-Invasive Assessment of Skin Endothelial Function Using Laser Doppler Flowmetry and Laser Speckle Contrast Imaging

BACKGROUND: Endothelial dysfunction precedes atherosclerosis. Vasodilation induced by acetylcholine (ACh) is a specific test of endothelial function. Reproducibility of laser techniques such as laser-Doppler-flowmetry (LDF) and Laser-speckle-contrast-imaging (LSCI) to detect ACh vasodilation is debated and results expressions lack standardization. We aimed to study at a 7-day interval (i) the inter-subject reproducibility, (ii) the intra-subjects reproducibility, and (iii) the effect of the results expressions over variability. METHODS AND RESULTS: Using LDF and LSCI simultaneously, we performed two different ACh-iontophoresis protocols. The maximal ACh vasodilation (peak-ACh) was expressed as absolute or normalized flow or conductance values. Inter-subject reproducibility was expressed as coefficient of variation (inter-CV,%). Intra-subject reproducibility was expressed as within subject coefficients of variation (intra-CV,%), and intra-class correlation coefficients (ICC). Fifteen healthy subjects were included. The inter-subject reproducibility of peak-ACh depended upon the expression of the results and ranged from 55% to 162% for LDF and from 17% to 83% for LSCI. The intra-subject reproducibility (intra-CV/ICC) of peak-ACh was reduced when assessed with LSCI compared to LDF no matter how the results were expressed and whatever the protocol used. The highest intra-subject reproducibility was found using LSCI. It was 18.7%/0.87 for a single current stimulation (expressed as cutaneous vascular conductance) and 11.4%/0.61 for multiple current stimulations (expressed as absolute value). CONCLUSION: ACh-iontophoresis coupled with LSCI is a promising test to assess endothelial function because it is reproducible, safe, and non-invasive. N°: NCT01664572

Acadesine Kills Chronic Myelogenous Leukemia (CML) Cells through PKC-Dependent Induction of Autophagic Cell Death

CML is an hematopoietic stem cell disease characterized by the t(9;22) (q34;q11) translocation encoding the oncoprotein p210BCR-ABL. The effect of acadesine (AICAR, 5-Aminoimidazole-4-carboxamide-1-β-D-ribofuranoside) a compound with known antileukemic effect on B cell chronic lymphoblastic leukemia (B-CLL) was investigated in different CML cell lines. Acadesine triggered loss of cell metabolism in K562, LAMA-84 and JURL-MK1 and was also effective in killing imatinib-resistant K562 cells and Ba/F3 cells carrying the T315I-BCR-ABL mutation. The anti-leukemic effect of acadesine did not involve apoptosis but required rather induction of autophagic cell death. AMPK knock-down by Sh-RNA failed to prevent the effect of acadesine, indicating an AMPK-independent mechanism. The effect of acadesine was abrogated by GF109203X and Ro-32-0432, both inhibitor of classical and new PKCs and accordingly, acadesine triggered relocation and activation of several PKC isoforms in K562 cells. In addition, this compound exhibited a potent anti-leukemic effect in clonogenic assays of CML cells in methyl cellulose and in a xenograft model of K562 cells in nude mice. In conclusion, our work identifies an original and unexpected mechanism by which acadesine triggers autophagic cell death through PKC activation. Therefore, in addition to its promising effects in B-CLL, acadesine might also be beneficial for Imatinib-resistant CML patients

Evolville, l’évolution s’invite en ville

En réponse aux modifications de l’environnement urbain, les populations et communautés animales et végétales se réarrangent, s’accommodent et/ou s’adaptent. Comprendre les processus amenant à ces différentes réponses est essentiel pour concevoir des bâtiments, quartiers et villes plus écologiques et résilients. Nous initions un observatoire des diversités taxonomiques et fonctionnelles des communautés et populations végétales soumises à des contextes d’artificialisation et de gestion variés. La mise en commun de compétences variées en écologie, en géomatique et en sciences humaines permet d’améliorer notre compréhension des mécanismes à l’œuvre dans l’adaptation de la biodiversité aux humains, leurs constructions, leurs activités. L’année 2020 était une phase pilote qui nous a permis de définir nos protocoles et de les tester

A novel human skin chamber model to study wound infection ex vivo

Wound infections with multi-drug resistant bacteria increase morbidity and mortality and have considerable socioeconomic impact. They can lead to impaired wound healing, resulting in rising treatment costs. The aim of this study was to investigate an ex vivo human wound infection model. Human full-thickness skin from the operating room (OR) was placed into the Bo-Drum® and cultivated for 7 days in an air–liquid interphase. On day 8, the skin was inoculated with either (1) Pseudomonas aeruginosa, (2) Staphylococcus aureus (105 CFU, n = 3) or (3) carrier control. 1, 3 and 7 days after inoculation colony forming units in the tissue/media were determined and cytokine expression was quantified. A reliable and reproducible wound infection could be established for 7 days. At this timepoint, 1.8 × 108 CFU/g tissue of P. aeruginosa and 2 × 107 CFU/g tissue of S. aureus were detected. Immunohistochemical analysis demonstrated bacterial infection and epidermolysis in infected skin. RT-PCR analysis exhibited a significant induction of proinflammatory cytokines after infection. The BO-drum® is a robust, easy-to-use, sterilizable and reusable ex vivo full-skin culture system. For investigation of wound infection, treatment and healing, the BO-drum® presents a convenient model and may help to standardize wound research