Biophysical modelling of a drosophila photoreceptor

It remains unclear how visual information is co-processed by different layers of neurons in the retina. In particular, relatively little is known how retina translates vast environmental light changes into neural responses of limited range. We began examining this question in a bottom-up way in a relatively simple °y eye. To gain understanding of how complex bio-molecular interactions govern the conversion of light input into voltage output (phototransduction), we are building a biophysical model of the Drosophila R1-R6 photoreceptor. Our model, which relates molecular dynamics of the underlying biochemical reactions to external light input, attempts to capture the molecular dynamics of phototransduction gain control in a quantitative way

The Past Has Ears (PHE): XR Explorations of Acoustic Spaces as Cultural Heritage

Hearing is one of our most pervasive senses. There is no equivalent to closing our eyes, or averting our gaze, for the ears. When we think about great architectural achievements in European history, such as ancient amphitheatres or Gothic cathedrals, their importance is strongly tied to their acoustic environment. The acoustics of a heritage site is an intangible consequence of the space's tangible construction and furnishings. Inspired by the project's namesake (Phe, for the constellation Phoenix), and the relatively recent res at Cathedrale de Notre Dame de Paris and Teatro La Fenice opera hall, the PHE project focuses on virtual reconstruction of heritage sites, bringing them back from the ashes. In addressing the intangible acoustic heritage of architectural sites, three main objectives have been identied for this research project: Documentation, Modelling, and Presentation. In parallel, three heritage sites are participating as case studies: Tindari Theatre (IT), Notre-Dame de Paris Cathedral (FR), and The Houses of Parliament (UK). The acoustics of a space is immersive, spatial, and due to the nature of auditory perception egocentric, in contrast to visual perception of an object, which can be observed from outside". Consequently, presentation methods for communicating acoustic heritage must represent the spatially immersive and listener-centric nature of acoustics. PHE will lead development of a museum grade hardware/software prototype for the presentation of immersive audio experiences adaptable to multiple platforms, from on-site immersive speaker installations, to mobile XR via smartphone applications

Hooge's Constant of Carbon Nanotube Field Effect Transistors

The 1/f noise in individual semiconducting carbon nanotubes (s-CNT) in a field effect transistor configuration has been measured in ultra-high vacuum and following exposure to air. The amplitude of the normalized current spectral noise density is independent of source-drain current, indicating the noise is due to mobility rather than number fluctuations. Hooge's constant for s-CNT is found to be 9.3 plus minus 0.4x10^-3. The magnitude of the 1/f noise is substantially degreased by exposing the devices to air

Curvaton Potential Terms, Scale-Dependent Perturbation Spectra and Chaotic Initial Conditions

The curvaton scenario predicts an almost scale-invariant spectrum of perturbations in most inflation models. We consider the possibility that renormalisable phi^4 or Planck scale-suppressed non-renormalisable curvaton potential terms may result in an observable deviation from scale-invariance. We show that if the curvaton initially has a large amplitude and if the total number of e-foldings of inflation is less than about 300 then a running blue perturbation spectrum with an observable deviation from scale-invariance is likely. D-term inflation is considered as an example with a potentially low total number of e-foldings of inflation. A secondary role for the curvaton, in which it drives a period of chaotic inflation leading to D-term or other flat potential inflation from an initially chaotic state, is suggested.Comment: 12 pages LaTeX, minor corrections, to be published in JCA

Resonant decay of flat directions

We study preheating, i.e., non-perturbative resonant decay, of flat direction fields, concentrating on MSSM flat directions and the right handed sneutrino. The difference between inflaton preheating and flaton preheating, is that the potential is more constraint in the latter case. The effects of a complex driving field, quartic couplings in the potential, and the presence of a thermal bath are important and cannot be neglected. Preheating of MSSM flat directions is typically delayed due to out-of-phase oscillations of the real and imaginary components and may be preceded by perturbative decay or $Q$-ball formation. Particle production due to the violation of adiabaticity is expected to be inefficient due to back reaction effects. For a small initial sneutrino VEV, $\lesssim m_N/h$ with $m_N$ the mass of the right handed sneutrino and $h$ a yakawa coupling, there are tachyonic instabilities. The $D$-term quartic couplings do not generate an effective mass for the tachyonic modes, making it an efficient decay channel. It is unclear how thermal scattering affects the resonance.Comment: 20 pages, 4 figure

Quantized Adiabatic Charge Transport in a Carbon Nanotube

The coupling of a metallic Carbon nanotube to a surface acoustic wave (SAW) is proposed as a vehicle to realize quantized adiabatic charge transport in a Luttinger liquid system. We demonstrate that electron backscattering by a periodic SAW potential, which results in miniband formation, can be achieved at energies near the Fermi level. Electron interaction, treated in a Luttinger liquid framework, is shown to enhance minigaps and thereby improve current quantization. Quantized SAW induced current, as a function of electron density, changes sign at half-filling.Comment: 5 pages, 2 figure

Technical Note: Mesocosm approach to quantify dissolved inorganic carbon percolation fluxes

Dissolved inorganic carbon (DIC) fluxes across the vadose zone are influenced by a complex interplay of biological, chemical and physical factors. A novel soil mesocosm system was evaluated as a tool for providing information on the mechanisms behind DIC percolation to the groundwater from unplanted soil. Carbon dioxide partial pressure (<i>p</i>CO₂), alkalinity, soil moisture and temperature were measured with depth and time, and DIC in the percolate was quantified using a sodium hydroxide trap. Results showed good reproducibility between two replicate mesocosms. The <i>p</i>CO₂ varied between 0.2 and 1.1%, and the alkalinity was 0.1–0.6 meq L⁻¹. The measured cumulative effluent DIC flux over the 78-day experimental period was 185–196 mg L⁻¹ m⁻² and in the same range as estimates derived from <i>p</i>CO₂ and alkalinity in samples extracted from the side of the mesocosm column and the drainage flux. Our results indicate that the mesocosm system is a promising tool for studying DIC percolation fluxes and other biogeochemical transport processes in unsaturated environments

Aspects of warm-flat directions

Considering the mechanism of dissipative slow-roll that has been used in warm inflation scenario, we show that dissipation may alter usual cosmological scenarios associated with SUSY-flat directions. We mainly consider SUSY-flat directions that have strong interactions with non-flat directions and may cause strong dissipation both in thermal and non-thermal backgrounds. An example is the Affleck-Dine mechanism in which dissipation may create significant (both qualitative and quantitative) discrepancies between the conventional scenario and the dissipative one. We also discuss several mechanisms of generating curvature perturbations in which the dissipative field, which is distinguished from the inflaton field, can be used as the source of cosmological perturbations. Considering the Morikawa-Sasaki dissipative coefficient, the damping caused by the dissipation may be significant for many MSSM flat directions even if the dissipation is far from thermal equilibrium.Comment: 22 pages, accepted for publication in International Journal of Modern Physics

Identifying the curvaton within MSSM

We consider inflaton couplings to MSSM flat directions and the thermalization of the inflaton decay products, taking into account gauge symmetry breaking due to flat direction condensates. We then search for a suitable curvaton candidate among the flat directions, requiring an early thermally induced start for the flat direction oscillations to facilitate the necessary curvaton energy density dominance. We demonstrate that the supersymmetry breaking $A$-term is crucial for achieving a successful curvaton scenario. Among the many possible candidates, we identify the ${\bf u_1dd}$ flat direction as a viable MSSM curvaton.Comment: 9 pages. Discussion on the evaporation of condensate added, final version published in JCA

Interference effects in electronic transport through metallic single-wall carbon nanotubes

In a recent paper Liang {\it et al.} [Nature {\bf 411}, 665 (2001)] showed experimentally, that metallic nanotubes, strongly coupled to external electrodes, may act as coherent molecular waveguides for electronic transport. The experimental results were supported by theoretical analysis based on the scattering matrix approach. In this paper we analyze theoretically this problem using a real-space approach, which makes it possible to control quality of interface contacts. Electronic structure of the nanotube is taken into account within the tight-binding model. External electrodes and the central part (sample) are assumed to be made of carbon nanotubes, while the contacts between electrodes and the sample are modeled by appropriate on-site (diagonal) and hopping (off-diagonal) parameters. Conductance is calculated by the Green function technique combined with the Landauer formalism. In the plots displaying conductance {\it vs.} bias and gate voltages, we have found typical diamond structure patterns, similar to those observed experimentally. In certain cases, however, we have found new features in the patterns, like a double-diamond sub-structure.Comment: 15 pages, 4 figures. To apear in Phys. Rev.