Scattering effects from neighboring atoms in core-level WSe2 photoemission

Methods of attosecond science originally developed to investigate systems in the gas phase are currently being adapted to obtain temporal information on the electron dynamics that takes place in condensed-matter systems. In particular, streaking measurements have recently been performed to determine photoemission time delays from the WSe2 dichalcogenide. In this work we present a fully atomistic description of the photoemission process in WSe2 and provide angularly resolved photoemission cross sections and time delays from the W 4f, Se 3d and Se 4s core states of the system. Since these states are spatially localized, we propose a cluster approach in which we build up from smaller to larger clusters, so that we can assess the importance of scattering effects by each new layer of neighboring atoms. We use a static-exchange density functional theory method with B-spline functions, where a one-center angular-momentum expansion is supplemented by off-center expansions with fewer partial waves. This enhances convergence in comparison with a one-center expansion, which would require very high angular momenta to characterize the localized fast oscillations near each off-center atomic core. We find that the photoemission delays and fully differential cross sections are strongly affected by scattering events that take place off the neighboring atoms, implying the need to consider their effects for quantitative descriptions of the photoemission proces

Attosecond timing of electron emission from a molecular shape resonance

Shape resonances in physics and chemistry arise from the spatial confinement of a particle by a potential barrier. In molecular photoionization, these barriers prevent the electron from escaping instantaneously, so that nuclei may move and modify the potential, thereby affecting the ionization process. By using an attosecond two-color interferometric approach in combination with high spectral resolution, we have captured the changes induced by the nuclear motion on the centrifugal barrier that sustains the well-known shape resonance in valence-ionized N$_2$. We show that despite the nuclear motion altering the bond length by only $2\%$, which leads to tiny changes in the potential barrier, the corresponding change in the ionization time can be as large as $200$ attoseconds. This result poses limits to the concept of instantaneous electronic transitions in molecules, which is at the basis of the Franck-Condon principle of molecular spectroscopy.Comment: 24 pages, 5 figure

A standard numbering scheme for class C β-lactamases

Unlike classes A and B, a standardized amino acid numbering scheme has not been proposed for the class C (AmpC) β-lactamases, which complicates communication in the field. Here, we propose a scheme developed through a collaborative approach that considers both sequence and structure, preserves traditional numbering of catalytically important residues (Ser64, Lys67, Tyr150, and Lys315), is adaptable to new variants or enzymes yet to be discovered, and includes a variation for genetic and epidemiological applications

The role of intramolecular scattering in K-shell photoionization

We report evidence of intramolecular scattering occurring in inner shell photoionization of small molecules. Pronounced oscillations of the ratios between vibrationally resolved cross sections (v-ratios) as a function of photon energy have been observed theoretically and experimentally. Qualitative agreement with a 1st Born model confirms that they are due to intramolecular scattering: when an electron is ejected from a very localized region in the center of a polyatomic molecule, such as the C(1s) orbital in a CF4 molecule, it is diffracted by the surrounding atomic centers, encoding the geometry of the molecule [1, 2]