The global naturalized Alien Flora (GloNAF) database

This dataset provides the Global Naturalized Alien Flora (GloNAF) database, ver-sion 1.2. Glo NAF represents a data compendium on th e occurrence and identit y of naturalizedalien vascular plant taxa across geographic regions (e.g. countries, states, provinces, districts,islands) around the globe. The dataset includes 13,939 taxa and covers 1,029 regions (including381 islands). The dataset is based on 210 data sources. For each ta x on-b y-region combination, wepr ovide information on whether the tax on is consider ed to be naturalized in the specific region(i.e. has established self-sustaining popula tions in the wild). Non-native taxa are marked as“alien”, when it is not clear whether they are naturalized. To facilitate alignment with other plantdatabases, we pro v ide f or each taxon the name as given in the original data source and the stan-dardized taxon and family names used by The Plant List Version 1.1 (http://www.theplantlist.org/). We pro vide an ESRI shapefile including polygons f or each region and informa tion on whetherit is an island or a mainland region, the country and the Taxonomic Databases Working Group(TDWG) regions it is part of (TDWG levels 1–4). We also provide several variables that can beused to filter the data according to quality and completeness of alien taxon lists, which varyamong the combinations of regions and da ta sources. A pre vious version of the GloNAF dataset(version 1.1) has already been used in several studies on, for example, historical spatial flows oftaxa between continents and geographical patterns and determinants of naturalization across dif-ferent taxonomic groups. We intend the updated and expanded GloNAF version presented hereto be a global resource useful for studying plant inv asions and changes in biodiversity from regio-nal to global scales. We release these data into the public domain under a Crea ti ve CommonsZer o license waiver (https://creati v ecommons.org/share-y our -work/public-domain/cc0/). Wheny ou use the da ta in your publication, we request that y ou cite this da ta paper. If GloN AF is amajor part of the data analyzed in your study, you should consider inviting the GloNAF coreteam (see Metadata S1: Originators in the Overall project description) as collaborators. If youplan to use the GloNAF dataset, we encourage y ou to contact the GloNAF core team to checkwhether there have been recent updates of the dataset, and whether similar analyses are already ongoing

Nepenthes barcelonae (Nepenthaceae), a new species from Luzon, Philippines.

Nepenthes barcelonae is described as a new species in sect. Insignes, where it is unique in the inset mouth and the dichromic upper pitchers (first-produced pitchers red, later-produced pitchers green) which are also dimorphic. This is a newly recorded phenomenon in the genus: the first produced (primary upper pitchers) are red, larger, stouter, and have an uncoiled long tendril, while those later produced (secondary upper pitchers) are green, smaller, more slender, and have a coiled tendril. The only population of this species that is currently known grows in an area less than 10km² on a single mountain. Individual plants are at risk from collecting for the horticultural trade. Following the IUCN criteria, N. barcelonae is assessed as Critically Endangered

Genetic Diversity and Structure in the Philippine Rafflesia lagascae Complex (Rafflesiaceae) inform its Taxonomic Delimitation and Conservation

Rafflesia lagascae (Rafflesiaceae) is a rare endo-holoparasitic plant species with a disjunct distribution on Luzon Island in the Philippines. It is morphologically very similar to R. manillana, which is only known from a single population on nearby Samar Island. This study aims to contribute to the taxonomy and conservation of R. lagascae and R. manillana (i.e., the R. lagascae complex) by resolving their patterns of genetic diversity and genetic structure. The results of population genetic analyses of a microsatellite data set indicate that despite their frequently extremely small sizes and geographic isolation, Rafflesia populations display moderate genetic diversity and do not show evidence of pronounced inbreeding. Most populations appear to be strongly genetically differentiated from each other, suggesting limited gene flow between them. Patterns of genetic diversity of staminate and pistillate Rafflesia flowers growing on the same Tetrastigma host plants indicate that the R. lagascae complex is monoecious and that host plants are regularly infected by more than one Rafflesia plant. Both might enable Rafflesia to maintain viable populations in areas with low host densities. PCoA and Bayesian cluster analyses show that the R. lagascae complex is composed of three genetically isolated taxa. One of these constitutes R. manillana, supporting the morphology-based hypothesis that it is taxonomically distinct from R. lagascae. The second taxon in this complex is composed of the single population of R. lagascae from Mt. Labo. This morphologically cryptic population is genetically distinct from the 11 remaining R. lagascae populations that were included in this study and that form the third taxon. We recommend that R. lagascae s. s., the Mt. Labo R. lagascae, and R. manillana should be managed as different conservation entities

Article The fate of Robinsonia (Asteraceae): sunk in Senecio, but still monophyletic?

Abstract Robinsonia is a genus of eight species and is endemic to the Juan Fernández Islands. Previous studies based on ITS phylogenies place Robinsonia deeply nested within Senecio, however its monophyly remains uncertain. In this paper, we use phylogenies reconstructed from plastid, ITS-ETS, and combined data to test its monophyly. Plastid phylogenies support Robinsonia as monophyletic, whereas ITS-ETS trees suggest that Robinsonia berteroi may be more closely related to a South American clade of Senecio species rather than to the remaining Robinsonia species. Maximum parsimony and Bayesian inference analyses of the combined data are congruent with the plastid trees, whereas maximum likelihood analyses are congruent with the ITS-ETS data. Nodal support for either hypothesis is generally low, and Shimodaira-Hasegawa tests in which Robinsonia was either constrained to be monophyletic or to be non-monophyletic showed that these trees do not have significantly lower likelihood scores than trees from unconstrained analyses. Thus the monophyly of Robinsonia remains inconclusive despite additional data and analyses. The results of the present paper further corroborate the results of previous studies that Robinsonia is deeply nested within Senecio. We therefore propose to reduce Robinsonia to synonymy and present new names and combinations of the Robinsonia species under Senecio

The delimitation and evolutionary history of the Australasian lautusoid group of Senecio (Asteraceae: Senecioneae)

Senecio (Asteraceae: Senecioneae) is one of the largest genera of flowering plants and its infrageneric delimitation has been impeded by its large size (> 1000 species), large morphological variation and widespread incongruence between phylogenies derived from different datasets. As part of efforts to improve our understanding of the evolutionary relationships among infrageneric Senecio groups, nuclear (nrITS, ETS) and plastid (psbA-trnH, trnL and trnL-F) DNA sequence data were used to study the delimitation of the Australasian Lautusoid group of Senecio. These data were also used to understand the evolutionary origins of polyploid species that have been placed in this informally recognized group. The results of our phylogenetic analyses indicate that Australasian Senecio compose four separate and distantly related lineages, which are here informally named the Disciform s.str., Lautusoid, Odoratus s.l., and Quadridentatus groups. A new delimitation of the Lautusoid group is presented that includes species previously placed in this group based on morphological similarities, as well as some that were previously assigned to other informally recognized Senecio groups. This brings the total number of confirmed members of the Lautusoid group to 15 species. Six allopolyploid species were identified that resulted from hybridization between members of the Lautusoid group and species of the three other Australasian Senecio lineages. Our findings indicate that hybridization has played an important role in the evolutionary diversification of Australasian Senecio and provide a framework for further studies into their evolutionary history

A preliminary conservation genetic study of Pittosporum obcordatum (Pittosporaceae), an endemic New Zealand species with a disjunct distribution

Pittosporum obcordatum (Pittosporaceae; heart-leaved kōhūhū) is an endemic New Zealand plant species that is classified as Threatened - Nationally Vulnerable. It has a disjunct distribution and is only known from relatively few and small populations. Using 10 Inter-Simple Sequence Repeat markers (ISSRs), we studied patterns of genetic diversity and genetic differentiation among eight out of the c. 14 populations of this species to inform its conservation management. Pittosporum obcordatum has low genetic diversity at the population level (uHe = 0.169) compared to other long-lived and outcrossing species, but genetic diversity is relatively high in comparison with several other threatened species. Spearman’s Rank Correlation Coefficients suggest significant positive correlations between population size and genetic diversity as measured by the percentage of polymorphic loci and uHe. Pittosporum obcordatum also shows relatively high levels of genetic differentiation among populations (AMOVA-derived Φ’st = 0.508, P < 0.001; all pairwise Φst values P < 0.05), indicating low genetic connectivity. Populations with relatively few plants are therefore prone to further reductions in genetic diversity through inbreeding and genetic drift. Of these, especially the Kaitaia, Owen Valley and Paengaroa populations are of conservation concern, because they contain private alleles, and therefore notably contribute to the genetic diversity of P. obcordatum

A synopsis of Philippine Cyrtandra (Gesneriaceae)

A taxonomic synopsis of Philippine Cyrtandra (Gesneriaceae) is presented. Following a study of 138 published names and their types, we accept 98 Cyrtandra species for the Philippine flora. Except for C. angularis, C. elatostemoides, and C. yaeyamae, all are endemic to the country. Lectotypes or neotypes are designated for all names for which this is necessary, except for six names for which we were unable to locate original material. We also validate a species name that was previously described without a Latin diagnosis (C. peninsula), synonymize three names, and provide taxonomic notes for each species. In addition, we propose two replacement names for taxa for which a legitimate name in Cyrtandra does not currently exist: C. edanoi for a Philippine species and C. siporensis for a Sumatran species. A look-up table is provided to facilitate referencing of currently accepted names in Philippine Cyrtandra

Consensus_sequences_RADs-2

This fasta file contains consensus sequences derived from RADs genotyping of neutral loci in 29 S. lautus populations and the close relative S. madagascariensis. These sequences were used to construct the rooted phylogeny presented in Figure 2B of the manuscript