Metabolism of amino acid amides in Pseudomonas putida ATCC 12633

The metabolism of the natural amino acid L-valine, the unnatural amino acids D-valine, and D-, L-phenylglycine (D-, L-PG), and the unnatural amino acid amides D-, L-phenylglycine amide (D, L-PG-NH2) and L-valine amide (L-Val-NH2) was studied in Pseudomonas putida ATCC 12633. The organism possessed constitutive L-amidase activities towards L-PG-NH2 and L-Val-NH2, both following the same pattern of expression, suggesting the involvement of similarly regulated enzymes, or a common enzyme. Quite surprisingly, growth in mineral media with L-PG-NH2 resulted in variable, long lag phases of growth and strongly reduced L-amidase activities. Conversion of D-PG-NH2 into D-PG and L-PG also occurred and could be attributed to the presence of an inducible D-amidase and the racemization of the amino acid amide in combination with L-amidase activity, respectively. The further degradation of L-PG and D-PG involved constitutive L-PG aminotransferase and inducible D-PG dehydrogenase activities, respectively, both with a high degree of enantioselectivity. Amino acid racemase activity for D- and L-PG was not detected.

Orbital evolution of a particle around a black hole: II. Comparison of contributions of spin-orbit coupling and the self force

We consider the evolution of the orbit of a spinning compact object in a quasi-circular, planar orbit around a Schwarzschild black hole in the extreme mass ratio limit. We compare the contributions to the orbital evolution of both spin-orbit coupling and the local self force. Making assumptions on the behavior of the forces, we suggest that the decay of the orbit is dominated by radiation reaction, and that the conservative effect is typically dominated by the spin force. We propose that a reasonable approximation for the gravitational waveform can be obtained by ignoring the local self force, for adjusted values of the parameters of the system. We argue that this approximation will only introduce small errors in the astronomical determination of these parameters.Comment: 11 pages, 7 figure

Paternity in mallards: effects of sperm quality and female sperm selection for inbreeding avoidance

Postcopulatory processes might play an important role in sexual selection. In theory, fertilization success could be controlled by females via selection of particular sperm within their reproductive tract, or it could be determined by sperm competition per se. In practice, these two mechanisms are difficult to disentangle. To assess the relative importance of both mechanisms we used artificial insemination in combination with measurements of sperm quality (swimming speed and motility) in mallards. In this species, females often lack behavioral control over copulations and hence may use postcopulatory mechanisms to optimize their reproductive output. One important factor affecting female fitness may be selection of genetically compatible males. To investigate the influence of sperm quality and parental relatedness on paternity we inseminated 12 groups of related females with a sperm mixture containing equal numbers of sperm from a brother and from an unrelated male. Paternity was independent of the relatedness of the siring male to the female but was significantly affected by long-term sperm swimming speed and motility. No interaction between relatedness and sperm quality on paternity was observed. These results suggest that female mallards are not able to select sperm on a purely genetic basis and emphasize the importance of sperm quality in gaining paternit

Pre-analytical stability of sorbitol dehydrogenase in equine heparinized plasma.

Sorbitol dehydrogenase (SDH) activity is one of the most sensitive and specific markers for hepatocellular injury in horses, but its reported lability makes it impractical for use in many clinical settings. To date, stability of SDH in equine samples has only been evaluated in a limited number of studies in serum samples of horses with activities within reference intervals. The objective of the study was to determine pre-analytical stability of equine SDH activity in heparinized plasma stored at different temperatures for up to 72 h. Twenty client-owned horses admitted to a veterinary teaching hospital for any reason were included in the study. Blood samples collected in lithium-heparin tubes were immediately centrifuged and SDH activity was analyzed within 1 h of collection (T0). Aliquots of plasma were stored at room temperature, 4 °C and -20 °C and SDH activity was re-analyzed after 4 h (T4), 24 h (T24) and 72 h (T72). A significant difference from values measured at T0 was found for samples stored at room temperature (P = 0.022) and -20 °C (P < 0.001), but not at 4 °C. The activity of SDH was within ±20% of that measured at T0 for all samples under all temperature conditions stored for 4 h, and for all samples stored at 4 °C for 24 h. Bland-Altman plots revealed narrow limits of agreement at T4 for all storage temperatures and at T24 for samples stored at 4 °C. The mean absolute percentage error and 95th percentile of the absolute percentage error were lower for samples stored at 4 °C than those stored at room temperature or -20 °C. The activity of SDH has adequate stability for 4 h regardless of storage temperature and 24 h if stored at 4 °C across a wide range of values. Knowledge of the pre-analytical stability of SDH may permit its broader use in assessing hepatic disorders in horses

Інтертекстуальність та гіпертекстуальні трансформації в турецьких народних оповідях

In this paper, some of the Turkish minstrel tales are analyzed in the frame of Gérard Genette’s ‘palimpsests’ approach. In the transtextuality category; the minstrel tales demonstrate both intertextual relations and hypertextual transformations. In terms of intertextuality, the tales present self-conscious intertextual relations by referring to other texts. The paper focuses on that in terms of hypertextuality, the mistrel tales transform the other texts by the process of reduction, extension, amplification and so on. Because of this process, the structure, the plot and the meaning of the previous text is transformed. As a result, the Turkish minstrel tales, as oral literary texts, can actively have role in intertextual relations as hypertexts.Türk halk hikâyelerine Fransız anlatıbilimci Gérard Genette’in “palempsest” imgesi ile yaklaşıldığında, halk hikâyelerinin ötemetinsellik sınıflandırmasında “metinlerarasılık” ve “ana metinsellik” ilişkilerini yansıttıkları görülmektedir. Halk hikâyeleri, göndermeler yoluyla bir başka metni somut olarak içinde barındırarak metinlerarasılık ilişkisi kurmaktadır. Bunun yanında, diğer sözlü ve yazılı metinleri biçimsel ve izleksel ya da anlamsal olarak dönüştürerek anlatısını yeniden kompoze etmek noktasında ana metinsellik ilişkisini kurmaktadır. Bu çalışmada Türk halk hikâyelerinin ana metinsellik dönüşümleri biçimsel ve anlamsal dönüşümler yoluyla incelenecektir. Türk halk hikâyeleri odağında yapılan çalışmalarda, genellikle kaynak ve etki alanı arayışları ile karşılaştırmalı eleştiri yaklaşımından yararlanılmıştır. Türk halk hikâyelerine metinlerarasılık ile yaklaşmak, anlatıların anlamsal ve yapısal olarak nasıl katmanlaştığını görmek ve anlatıyı metin olarak çözümlemek açısından somut veriler sağlayan bir yöntemdir

Observed photodetachment in parallel electric and magnetic fields

We investigate photodetachment from negative ions in a homogeneous 1.0-T magnetic field and a parallel electric field of approximately 10 V/cm. A theoretical model for detachment in combined fields is presented. Calculations show that a field of 10 V/cm or more should considerably diminish the Landau structure in the detachment cross section. The ions are produced and stored in a Penning ion trap and illuminated by a single-mode dye laser. We present preliminary results for detachment from S- showing qualitative agreement with the model. Future directions of the work are also discussed.Comment: Nine pages, five figures, minor revisions showing final publicatio

The fossil record of early tetrapods: worker effort and the end-Permian mass extinction

It is important to understand the quality of the fossil record of early tetrapods (Tetrapoda, minus Lissamphibia and Amniota) because of their key role in the transition of vertebrates from water to land, their dominance of terrestrial faunas for over 100 million years of the late Palaeozoic and earlyMesozoic, and their variable fates during the end−Permian mass extinction. The first description of an early tetrapod dates back to 1824, and since then discoveries have occurred at a rather irregular pace, with peaks and troughs corresponding to some of the vicissitudes of human history through the past two centuries. As expected, the record is dominated by the well−sampled sedimentary basins of Europe and North America, but finds from other continents are increasing rapidly. Comparisons of snapshots of knowledge in 1900, 1950, and 2000 show that discovery of new species has changed the shape of the species−level diversification curve, contrary to earlier studies of family−level taxa. There is, however, little evidence that taxon counts relate to research effort (as counted by numbers of publications), and there are no biasing effects associated with differential study of different time intervals through the late Palaeozoic and Mesozoic. In fact, levels of effort are apparently not related to geological time, with no evidence that workers have spent more time on more recent parts of the record. In particular, the end−Permian mass extinction was investigated to determine whether diversity changes through that interval might reflect worker effort: it turns out that most records of early tetrapod taxa (when corrected for duration of geological series) occur in the Lower Triassic

Forced Stratified Turbulence: Successive Transitions with Reynolds Number

Numerical simulations are made for forced turbulence at a sequence of increasing values of Reynolds number, R, keeping fixed a strongly stable, volume-mean density stratification. At smaller values of R, the turbulent velocity is mainly horizontal, and the momentum balance is approximately cyclostrophic and hydrostatic. This is a regime dominated by so-called pancake vortices, with only a weak excitation of internal gravity waves and large values of the local Richardson number, Ri, everywhere. At higher values of R there are successive transitions to (a) overturning motions with local reversals in the density stratification and small or negative values of Ri; (b) growth of a horizontally uniform vertical shear flow component; and (c) growth of a large-scale vertical flow component. Throughout these transitions, pancake vortices continue to dominate the large-scale part of the turbulence, and the gravity wave component remains weak except at small scales.Comment: 8 pages, 5 figures (submitted to Phys. Rev. E

Evaluating the function of wildcat faecal marks in relation to the defence of favourable hunting areas

This is an Accepted Manuscript of an article published by Taylor & Francis in Ethology Ecology and Evolution on 2015, available online: http://www.tandfonline.com/10.1080/03949370.2014.905499To date, there have been no studies of carnivores that have been specifically designed to examine the function of scent marks in trophic resource defence, although several chemical communication studies have discussed other functions of these marks. The aim of this study was to test the hypothesis that faecal marks deposited by wildcats (Felis silvestris) serve to defend their primary trophic resource, small mammals. Field data were collected over a 2-year period in a protected area in northwestern Spain. To determine the small mammal abundance in different habitat types, a seasonal live trapping campaign was undertaken in deciduous forests, mature pine forests and scrublands. In each habitat, we trapped in three widely separated Universal Transverse Mercator (UTM) cells. At the same time that the trapping was being performed, transects were conducted on foot along forest roads in each trapping cell and in one adjacent cell to detect fresh wildcat scats that did or did not have a scent-marking function. A scat was considered to have a presumed marking function when it was located on a conspicuous substrate, above ground level, at a crossroad or in a latrine. The number of faecal marks and the small mammal abundance varied by habitat type but not by seasons. The results of the analysis of covariance (ANCOVA) indicated that small mammal abundance and habitat type were the factors that explained the largest degrees of variation in the faecal marking index (number of faecal marks in each cell/number of kilometres surveyed in each cell). This result suggests that wildcats defended favourable hunting areas. They mark most often where their main prey lives and so where they spend the most time hunting (in areas where their main prey is more abundant). This practice would allow wildcats to protect their main trophic resource and would reduce intraspecific trophic competitio

Approximating the inspiral of test bodies into Kerr black holes

We present a new approximate method for constructing gravitational radiation driven inspirals of test-bodies orbiting Kerr black holes. Such orbits can be fully described by a semi-latus rectum $p$, an eccentricity $e$, and an inclination angle $\iota$; or, by an energy $E$, an angular momentum component $L_z$, and a third constant $Q$. Our scheme uses expressions that are exact (within an adiabatic approximation) for the rates of change ($\dot{p}$, $\dot{e}$, $\dot{\iota}$) as linear combinations of the fluxes ($\dot{E}$, $\dot{L_z}$, $\dot{Q}$), but uses quadrupole-order formulae for these fluxes. This scheme thus encodes the exact orbital dynamics, augmenting it with approximate radiation reaction. Comparing inspiral trajectories, we find that this approximation agrees well with numerical results for the special cases of eccentric equatorial and circular inclined orbits, far more accurate than corresponding weak-field formulae for ($\dot{p}$, $\dot{e}$, $\dot{\iota}$). We use this technique to study the inspiral of a test-body in inclined, eccentric Kerr orbits. Our results should be useful tools for constructing approximate waveforms that can be used to study data analysis problems for the future LISA gravitational-wave observatory, in lieu of waveforms from more rigorous techniques that are currently under development.Comment: 15 pages, 5 figures, submitted to PR