303 research outputs found
Atomistic spin dynamics of the CuMn spin glass alloy
We demonstrate the use of Langevin spin dynamics for studying dynamical
properties of an archetypical spin glass system. Simulations are performed on
CuMn (20% Mn) where we study the relaxation that follows a sudden quench of the
system to the low temperature phase. The system is modeled by a Heisenberg
Hamiltonian where the Heisenberg interaction parameters are calculated by means
of first-principles density functional theory. Simulations are performed by
numerically solving the Langevin equations of motion for the atomic spins. It
is shown that dynamics is governed, to a large degree, by the damping parameter
in the equations of motion and the system size. For large damping and large
system sizes we observe the typical aging regime.Comment: 18 pages, 9 figure
Existence and approximation of Hunt processes associated with generalized Dirichlet forms
We show that any strictly quasi-regular generalized Dirichlet form that
satisfies the mild structural condition D3 is associated to a Hunt process, and
that the associated Hunt process can be approximated by a sequence of
multivariate Poisson processes. This also gives a new proof for the existence
of a Hunt process associated to a strictly quasi-regular generalized Dirichlet
form that satisfies SD3 and extends all previous results.Comment: Revised, shortened and improved versio
Protein-RNA linkage and post-translational modifications of two sobemovirus VPgs
Sobemoviruses possess a viral genome-linked protein (VPg) attached to the 5' end of viral RNA. VPg is processed from the viral polyprotein. In the current study, Cocksfoot mottle virus (CfMV) and Rice yellow mottle virus (RYMV) VPgs were purified from virions and analysed by mass spectrometry. The cleavage sites in the polyprotein and thereof the termini of VPg were experimentally proven. The lengths of the mature VPgs were determined to be 78 and 79 aa residues, respectively. The amino acid residues covalently linked to RNA in the two VPgs were, surprisingly, not conserved; it is a tyrosine at position 5 of CfMV VPg and serine at position 1 of RYMV VPg. Phosphorylations were identified in CfMV and RYMV VPgs with two positionally similar locations T20/S14 and S71/S72, respectively. RYMV VPg contains an additional phosphorylation site at S41
A candidate gene for fire blight resistance in Malus Ă robusta 5 is coding for a CC-NBS-LRR
Erworben im Rahmen der Schweizer Nationallizenzen (http://www.nationallizenzen.ch)Fire blight is the most important bacterial disease in apple (MalusâĂâ domestica) and pear (Pyrus communis) production. Today, the causal bacterium Erwinia amylovora is present in many apple- and pear-growing areas. We investigated the natural resistance of the wild apple MalusâĂâ robusta 5 against E. amylovora, previously mapped to linkage group 3. With a fine-mapping approach on a population of 2,133 individuals followed by phenotyping of the recombinants from the region of interest, we developed flanking markers useful for marker-assisted selection. Open reading frames were predicted on the sequence of a BAC spanning the resistance locus. One open reading frame coded for a protein belonging to the NBSâLRR family. The in silico investigation of the structure of the candidate resistance gene against fire blight of M.âĂâ robusta 5, FB_MR5, led us hypothesize the presence of a coiled-coil region followed by an NBS and an LRR-like structure with the consensus âLxxLx[IL]xxCxxLxxLâ. The function of FB_MR5 was predicted in agreement with the decoy/guard model, that FB_MR5 monitors the transcribed RIN4_MR5, a homolog of RIN4 of Arabidopsis thaliana that could interact with the previously described effector AvrRpt2EA of E. amylovora
Optoelectronic Reservoir Computing
Reservoir computing is a recently introduced, highly efficient bio-inspired
approach for processing time dependent data. The basic scheme of reservoir
computing consists of a non linear recurrent dynamical system coupled to a
single input layer and a single output layer. Within these constraints many
implementations are possible. Here we report an opto-electronic implementation
of reservoir computing based on a recently proposed architecture consisting of
a single non linear node and a delay line. Our implementation is sufficiently
fast for real time information processing. We illustrate its performance on
tasks of practical importance such as nonlinear channel equalization and speech
recognition, and obtain results comparable to state of the art digital
implementations.Comment: Contains main paper and two Supplementary Material
Multiple micro-optical atom traps with a spherically aberrated laser beam
We report on the loading of atoms contained in a magneto-optic trap into
multiple optical traps formed within the focused beam of a CO_{2} laser. We
show that under certain circumstances it is possible to create a linear array
of dipole traps with well separated maxima. This is achieved by focusing the
laser beam through lenses uncorrected for spherical aberration. We demonstrate
that the separation between the micro-traps can be varied, a property which may
be useful in experiments which require the creation of entanglement between
atoms in different micro-traps. We suggest other experiments where an array of
these traps could be useful.Comment: 10 pages, 3 figure
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