Detección del virus de la enfermedad de Newcastle en aves de traspatio en Chile

Objetivo. Verificar la presencia del virus de la enfermedad de Newcastle (ENC) en aves de sistemas productivos de traspatio (SPT) de parte de la zona central de Chile. Materiales y métodos. Entre 2013 y 2015, un total de 1,579 hisopados orotraqueales fueron colectados de gallinas, pavos, patos y gansos pertenecientes a 328 SPT de la zona central de Chile. En cada SPT, los hisopos colectados de aves de la misma especie fueron agrupados en el mismo tubo con medio de transporte formando un pool compuesto por no más de 5 muestras. Los pooles fueron analizados por RT-PCR a tiempo real. Resultados. De un total de 364 pooles, 6 resultaron positivos al virus de la ENC. Los pooles positivos correspondieron a gallinas de las regiones de Valparaíso (n = 1) y Libertador General Bernardo O’Higgins (n=5). Ningún pool correspondiente a pavos, patos o gansos fue diagnosticado positivo. Conclusiones. Los resultados positivos demuestran la presencia del virus de la ENC en SPT en Chile. Esto podría deberse a la circulación de cepas lentogénicas del virus transmitidas por aves silvestres o bien al contacto con cepas vacunales administradas en los planteles industriales cuyas aves vacunadas pueden finalizar como SPT

Circulation of influenza in backyard productive systems in central Chile and evidence of spillover from wild birds

Backyard productive systems (BPS) are recognized as the most common form of animal production in the world. However, BPS frequently exhibit inherent biosecurity deficiencies, and could play a major role in the epidemiology of animal diseases and zoonoses. The aim of this study was to determine if influenza A viruses (IAV) were prevalent in backyard poultry and swine BPS in central Chile. Through active surveillance in Valparaiso and Metropolitan regions from 2012 - 2014, we found that influenza virus positivity by real-time RT-PCR (qRT-PCR) ranged from 0% during winter 2012-45.8% during fall 2014 at the farm level. We also obtained an H12 hemagglutinin (HA) sequence of wild bird origin from a domestic Muscovy duck (Cairina moschata), indicating spillover from wild birds into backyard poultry populations. Furthermore, a one-year sampling effort in 113 BPS in the Libertador Bernardo O'Higgins (LGB OHiggins) region showed that 12.6% of poultry and 2.4% of swine were positive for IAV by enzyme-linked immunosorbent assay (ELISA), indicative of previous exposure of farm animals to IAV. This study highlights the need for improved IAV surveillance in backyard populations given the close interaction between domestic animals, wild birds and people in these farms, particularly in an under-studied region, like South America.Fondecyt 11121389 U-Inicia grant 308 121017019102027 NIAID HHSN272201400006

Presence of influenza viruses in backyard poultry and swine in El Yali wetland, Chile

In South America little is known regarding influenza virus circulating in backyard poultry and swine populations. Backyard productive systems (BPS) that breed swine and poultry are widely distributed throughout Chile with high density in the central zone, and several BPS are located within the "El Yali" (EY) ecosystem, which is one of the most important wetlands in South America. Here, 130 different wild bird species have been described, of them, at least 22 species migrate yearly from North America for nesting. For this reason, EY is considered as a high-risk zone for avian influenza virus. This study aims to identify if backyard poultry and swine bred in the EY ecosystem have been exposed to influenza A virus and if so, to identify influenza virus subtypes. A biosecurity and handling survey was applied and samples were collected from BPS in two seasons (spring 2013 and fall 2014) for influenza seroprevalence, and in one season (fall 2014) for virus presence. Seroprevalence at BPS level was 42% (95% CI:22-49) during spring 2013 and 60% (95% CI 43-72) in fall 2014. rRT-PCR for the influenza A matrix gene indicated a viral prevalence of 27% (95% CI:14-39) at BPS level in fall 2014. Eight farms (73% of rRT-PCR positive farms) were also positive to the Elisa test at the same time. One BPS was simultaneously positive (rRT-PCR) in multiple species (poultry, swine and geese) and a H1N2 virus was identified from swine, exemplifying the risk that these BPS may pose for generation of novel influenza virusesFondecyt 11121389 FIV 121014019102011 NIAID HHSN272201400006

Risk factors and spatial relative risk assessment for influenza a virus in poultry and swine in backyard production systems of central Chile

Backyard production systems (BPS) are a common form of poultry and swine production worldwide. The limited implementation of biosecurity standards in these operations makes BPS a potential source for the emergence of pathogens that have an impact on both animal and public health. Information regarding circulation of influenza A virus (IAV) in poultry and swine raised in BPS is scarce; particularly in South American countries. The objective of this study was to estimate prevalence and seroprevalence of IAV in BPS in central Chile, identify subtype diversity, evaluate risk factors and spatial relative risk for IAV. Samples were collected from 329 BPS from central Chile. Seroprevalence at BPS level was 34.7% (95% CI: 23.1%-46.2%), 19.7% (95% CI: 9.9%-30.6%) and 11.7% (95% CI: 7.2%-16.4%), whereas prevalence at BPS level was 4.2% (95% CI: 0.0%-8.8%), 8.2% (95% CI: 0.8%-14.0%) and 9.2% (95% CI: 4.8%-13.1%), for the Metropolitan, Valparaiso and LGB O'Higgins regions, respectively. Spatial analysis revealed that central-western area of Metropolitan region and the southern province of Valparaiso region could be considered as high-risk areas for IAV (spatial relative risk = 2.2,p < .05). Logistic regression models identified the practice of breeding both poultry and pigs at the BPS as a risk factor (95% CI 1.06-3.75). From 75 IAV ELISA-positive sera, 20 chicken sera had haemagglutination inhibition titres ranging from 20 to 160, and of these, 11 had microneutralization titres ranging from 40 to 960 for one or more IAV subtypes. Identified subtypes were H1, H3, H4, H9, H10 and H12. Results from this study highlight the need for further IAV surveillance programmes in BPS in Chile. Early detection of IAV strains circulating in backyard animals, especially in regions with large human populations, could have an enormous impact on animal and public health.Comisión Nacional de Investigación Científica y Tecnológica 21120512 Comisión Nacional de Investigación Científica y Tecnológica (CONICYT) CONICYT FONDECYT 1121389 11917479 United States Department of Health & Human Services National Institutes of Health (NIH) - USA NIH National Institute of Allergy & Infectious Diseases (NIAID) HHSN27220140000

Wild birds in Chile harbor diverse avian influenza A viruses

While the circulation of avian influenza viruses (IAV) in wild birds in the northern hemisphere has been well documented, data from South America remain sparse. To address this gap in knowledge, we undertook IAV surveillance in wild birds in parts of Central and Northern Chile between 2012 and 2015. A wide diversity of hemagglutinin (HA) and neuraminidase (NA) subtypes were identified and 16 viruses were isolated including low pathogenic H5 and H7 strains, making this the largest and most diverse collection of Chilean avian IAVs to date. Unlike IAVs isolated from wild birds in other South American countries where the genes were most like viruses isolated from wild birds in either North America or South America, the Chilean viruses were reassortants containing genes like viruses isolated from both continents. In summary, our studies demonstrate that genetically diverse avian IAVs are circulating in wild birds in Chile highlighting the need for further investigation in this understudied area of the world.NIH NIAID contract HHSN272201400006

Assessing antibiotic residues in poultry eggs from backyard production systems in Chile, first approach to a non-addressed issue in farm animals

Simple Summary Eggs are a readily available and important food source for low income families that raise chicken in their households. It is therefore important to monitor if these products are safe for human consumption and contain no antibiotic residues that could lead to allergic reactions, intoxication, or antimicrobial resistance. However, little is known about the antimicrobial content of eggs consumed in rural households in Chile. Consequently, the aim of this study was to collect chicken eggs from rural households in the central region of Chile and screen them for antimicrobial activity. The results indicate that most collected eggs (73% of the 83 surveyed households), exhibited antimicrobial activity for at least one of the four tested antimicrobials. These results indicate that household members who consume these eggs are in danger of developing antibiotic-related illnesses and could contribute to antimicrobial resistance. Therefore, further studies are required to identify the exact compounds used to treat the chickens and to establish preventive measures to eradicate antimicrobial presence in their food supply. Eggs are the main product generated from backyard poultry production systems (BPS) because they can quickly be consumed and sold to meet essential family needs. Nevertheless, antimicrobial residues can accumulate in this product. The objective of this study was to evaluate the presence of antimicrobial residues in eggs produced by poultry kept in BPS in central Chile. To assess this, eggs were obtained from 83 BPS and analysed to evaluate the presence of antibiotic residues (families: tetracyclines, beta-lactams, aminoglycosides and macrolides), using a Four-Plate Test screening method for the detection, based on a bacterial growth inhibition method. Results show a lack of biosecurity procedures at BPS level, making these systems susceptible to the dissemination of antimicrobial residues. These include intensive animal production units in the proximity, and the presence of shared watercourses with other farms. Furthermore, 66% of the surveyed owners are indicated as giving pharmacological treatments to their chickens. Eggs from 61 BPS were positive for at least one antimicrobial. Fifty-three BPS were positive for more than one antimicrobial, and one BPS was positive for all four antimicrobials tested. Consequently, there is a risk that poultry eggs produced in BPS in central Chile carry residues of different families of antimicrobials.Comisión Nacional de Investigación Científica y Tecnológica (CONICYT) CONICYT FONDECYT 119174

Low pathogenic avian influenza (H7N6) virus causing an outbreak in commercial Turkey farms in Chile

In late 2016, an H7N6 low pathogenic avian influenza virus outbreak occurred in domestic turkeys in Central Chile. We characterized the genetic and antigenic properties of the outbreak virus and its experimental transmission in chickens. Our studies demonstrate that the outbreak virus is a reassortment of genes identified from Chilean wild bird viruses between 2013 and 2017 and displays molecular adaptations to poultry and antiviral resistance to adamantanes. Further, these wild bird viruses are also able to transmit in experimentally infected chickens highlighting the need for continued surveillance and improvement of biosecurity in poultry farms

Swine influenza virus (H1N2) characterization and transmission in ferrets, Chile

© 2017, Centers for Disease Control and Prevention (CDC). All rights reserved. Phylogenetic analysis of the influenza hemagglutinin gene (HA) has suggested that commercial pigs in Chile harbor unique human seasonal H1-like influenza viruses, but further information, including characterization of these viruses, was unavailable. We isolated influenza virus (H1N2) from a swine in a backyard production farm in Central Chile and demonstrated that the HA gene was identical to that in a previous report. Its HA and neuraminidase genes were most similar to human H1 and N2 viruses from the early 1990s and internal segments were similar to influenza A(H1N1)pdm09 virus. The virus replicated efficiently in vitro and in vivo and transmitted in ferrets by respiratory droplet. Antigenically, it was distinct from other swine viruses. Hemagglutination inhibition analysis suggested that antibody titers to the swine Chilean H1N2 virus were decreased in persons born after 1990. Further studies are needed